BAC Information

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BAC

Clone NameB6Ng01-224P01
Chromosome10 (Build37)
Map Location 3,985,539 - 3,986,646
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P01.bB6Ng01-224P01.g
ACCGA039261GA039262
length1,0751,112
definitionB6Ng01-224P01.b B6Ng01-224P01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttcctagctaattcctagattctagatgtgatgtaagctgct
ggtggaaaaaatattacccagttatgaacactaaaatcttctgtaacaac
catacaggcaaaatgtgcccacccttgactgtttataggggcaaccaatt
actttctgaatgaatttaagggttattccacataagggaatccatgtctt
gtattgtaagctttgtcaaaaacccctacccatggaggtcattagttaaa
tgggtgcagggagacaccttgttgttcaactaaactgacatagaattaag
ctgccttctatttatctgtgttcatacccataggcagatcttagtctggg
tcttacacaggaaagtgactttctttggaagtcaaccacagtgagtgtag
aaactcatgtatggctagtcaagatgctgagagtaagagatggctgaagg
cacattcccaaacaagatatttctaccatcccttctaaggcttggggaac
atttcagaaaagagggctggaaaatgatggggaaaacagccatggaatgc
caacctctagacatgatgcaatgattagaatcacgaactcatcacagctg
ctcttacttgttcttgctctaggtatgtacatgcacaaggctgaccttct
caagattcaaggatagaggagtgccttatgggcccctacacctttcttcc
attgtcttggcttttgatagattctgggagaggaagagttgttgtcttca
gctatgcacctactgctgagcctacaggccccaaggcccactggatagca
ttaaatccatggtcatgctagcaaccctgtttaaactcaatgtcacaaaa
caaaacaaataagagcgagagaaaaagattttagggaagtataagggata
gacagggtgggagaagttaagagatattgaagatgagggcaaccagtgtg
catattgcatatattaaaccatgtcaaaaaactaattgatgttatattgc
cattatgcctaatgagagaaatatcatacagatagttgggtgatccaacg
actatagattttggttggaggagac
gaattccctaataaactctcctgaccctgacagtggaagaggaaaaataa
aataaaaaccaaccaaacaacaataataacatttgctcataagccctcca
gttgagaaaagcctgcctttctgagtagaacaaaaactggtccaattaaa
gaaatacagggtcgccctccattgctgaggggacagagccaagaaaaaac
acatgacagcaggacagcagggctaaaacctacaacatagacctgctcca
atgctaagacacaattacaatattagtgggcagccccattttcctactct
ctgcttcctctctcaaccttaggattcctgaataatcaagatattttaga
gaaagaactatagacacaggctccctatgacaaatgatgagtgaagggcc
agaataaagagaaatcaaagcaggaacacgggcaaactgaacctcctggt
acctgaagctatagtagccagtagagtcagatcagctgctaacatagcac
ctcataccaagggaccattttccttgcctgcctcctcagtgtgagtctca
tataatattcatctcaatttcatttattgattaaatattcctttttttaa
aattaaaattagtaagggcgacagaagtatcaaagtcacagaaaccaccc
ttgttagaattataaggcaggcagtttgaaaacagatatcattaatatgg
taagaaaattgacaggaaaacttcacatgacaacgacaggaaacagcaca
aggccggagtgagcagagacagaaactctgacaaatcacgatgtgctaga
aataaacccagtgactgaaatgaaggcttttctcaaagggctggtcaatc
tgttgacgttacattgaatagaaaagacacagcaagcactgggacacatg
agtcaaactaatgatgggctagattctcaccacaggtagagtgctagcac
tacaatgacagacagtcatagcagcaaatgccgaaggtgtggaagagtga
gctcactgctgaataattgtgaattggacagcccattctgagaacactgt
ggagcttctctaaataaacagccagttaagtcttcatgagattggtaccc
tacgtatcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3985539_3986646
seq2: B6Ng01-224P01.g_68_1179

seq1  GAATTCCCTAATAAACTCTCCTGACCCTGACAGTGGAAGAGGAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATAAACTCTCCTGACCCTGACAGTGGAAGAGGAAAAATAA  50

seq1  AATAAAAACCAACCAAACAACAATAATAACATTTGCTCATAAGCCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCAACCAAACAACAATAATAACATTTGCTCATAAGCCCTCCA  100

seq1  GTTGAGAAAAGCCTGCCTTTCTGAGTAGAACAAAAACTGGTCCAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAAGCCTGCCTTTCTGAGTAGAACAAAAACTGGTCCAATTAAA  150

seq1  GAAATACAGGGTCGCCCTCCATTGCTGAGGGGACAGAGCCAAGAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAGGGTCGCCCTCCATTGCTGAGGGGACAGAGCCAAGAAAAAAC  200

seq1  ACATGACAGCAGGACAGCAGGGCTAAAACCTACAACATAGACCTGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGCAGGACAGCAGGGCTAAAACCTACAACATAGACCTGCTCCA  250

seq1  ATGCTAAGACACAATTACAATATTAGTGGGCAGCCCCATTTTCCTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGACACAATTACAATATTAGTGGGCAGCCCCATTTTCCTACTCT  300

seq1  CTGCTTCCTCTCTCAACCTTAGGATTCCTGAATAATCAAGATATTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTCTCTCAACCTTAGGATTCCTGAATAATCAAGATATTTTAGA  350

seq1  GAAAGAACTATAGACACAGGCTCCCTATGACAAATGATGAGTGAAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTATAGACACAGGCTCCCTATGACAAATGATGAGTGAAGGGCC  400

seq1  AGAATAAAGAGAAATCAAAGCAGGAACACGGGCAAACTGAACCTCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGAGAAATCAAAGCAGGAACACGGGCAAACTGAACCTCCTGGT  450

seq1  ACCTGAAGCTATAGTAGCCAGTAGAGTCAGATCAGCTGCTAACATAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGCTATAGTAGCCAGTAGAGTCAGATCAGCTGCTAACATAGCAC  500

seq1  CTCATACCAAGGGACCATTTTCCTTGCCTGCCTCCTCAGTGTGAGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCAAGGGACCATTTTCCTTGCCTGCCTCCTCAGTGTGAGTCTCA  550

seq1  TATAATATTCATCTCAATTTCATTTATTGATTAAATATTCCTTTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTCATCTCAATTTCATTTATTGATTAAATATTCCTTTTTTTAA  600

seq1  AATTAAAATTAGTAAGGGCGACAGAAGTATCAAAGTCACAGAAACCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTAGTAAGGGCGACAGAAGTATCAAAGTCACAGAAACCACCC  650

seq1  TTGTTAGAATTATAAGGCAGGCAGTTTGAAAACAGATATCATTAATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAATTATAAGGCAGGCAGTTTGAAAACAGATATCATTAATATGG  700

seq1  TAAGAAAATTGACAGGAAAACTTCACATGACAACGACAGGAAACAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATTGACAGGAAAACTTCACATGACAACGACAGGAAACAGCACA  750

seq1  AGGCCGGAGTGAGCAGAGACAGAAACTCTGACAAATCACGATGTGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGAGTGAGCAGAGACAGAAACTCTGACAAATCACGATGTGCTAGA  800

seq1  AATAAACCCAGTGACTGAAATGAAGGCTTTTCTCAAAGGGCTGGTCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCAGTGACTGAAATGAAGGCTTTTCTCAAAGGGCTGGTCAATC  850

seq1  TGTTGACGTTACATTGAATAGAAAAGACACAGCAAGCACTGGGACACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACGTTACATTGAATAGAAAAGACACAGCAAGCACTGGGACACATG  900

seq1  AGTCAAACTAATGATGGGCTAGATTCTCACCACAGGTAGAGTGGCTAGCA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTCAAACTAATGATGGGCTAGATTCTCACCACAGGTAGAGT-GCTAGCA  949

seq1  CTACAATGACAGACAGTCATAGCAGCAAATGCCGAGGGTGTGGAAGAGTG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACAATGACAGACAGTCATAGCAGCAAATGCCGAAGGTGTGGAAGAGTG  999

seq1  AGCTCACTGCTG-ATAA-TGTGAATT-GACAG-CCATTCTGGAGAACACT  1046
      |||||||||||| |||| |||||||| ||||| ||||||| |||||||||
seq2  AGCTCACTGCTGAATAATTGTGAATTGGACAGCCCATTCT-GAGAACACT  1048

seq1  GTGGAGCTTCTCCTAATAAACAAGCAGGTAAGTC-TCATGAGA-TGGTTA  1094
      ||||||||||||  ||||||||  ||| |||||| |||||||| ||||  
seq2  GTGGAGCTTCTCTAAATAAACAGCCAGTTAAGTCTTCATGAGATTGGTAC  1098

seq1  CCTACGTATCATAA  1108
      ||||||||||||||
seq2  CCTACGTATCATAA  1112