BAC Information

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BAC

Clone NameB6Ng01-225C07
Chromosome10 (Build37)
Map Location 40,807,881 - 40,991,315
singlet/doubletdoublet
Overlap geneA530089I17Rik
Upstream geneSlc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
Downstream geneLOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C07.bB6Ng01-225C07.g
ACCGA039411GA039412
length1,206696
definitionB6Ng01-225C07.b B6Ng01-225C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,807,881 - 40,809,060)(40,990,796 - 40,991,315)
sequence
gaattcttaaaataataagagaagtgccagttgaagaacagatgccagct
aaacacaactttgacattttagccattttcaagcattggtgtgaaaagtg
ttttccagcatcgtgcctattgccagcctttgcctgtttgttccacttac
atcctaacaagtctaggctgacagtgactctctgaaaggggttagtaggg
cagccagtcctgtgagagtgttggagggcaacaggcccacagacctggag
atttttggctgtaagtattgtattgctcttttgaagtttctctcatggag
taggagtttactattgtcttggagggccccgagaacacctggtaatctgc
tgtggtgcagaagggcaggcatagccctagatgaagctgctgagcgtgcc
cttggtgctctaaatggtgcttggttttaaggaagaagtgagtttgagca
ggcatcttagagtctctagggactgatcgtggctgactttggctgcatct
gagaatgcccaaagactacaaacatgccacagggacatgcttttattgta
tgacccaatgttaaccaaattattaccatagtttaaactgaagttctgtg
ccccttgtgcaaggtcacacagcaataagtgtctgtatttggatttgaac
ccaagcggttgggtttctgagttccactcttaacaaagagcccagaattt
tggagtgatcttgcgagcaggaagtcctcacttttgagaagtgcataaag
gtgggttgatggtgtgcagggaggaagaaatgtcaccctggagatttctt
cagatctcccaggtaacgagacttctttgggacatccctttgggctaaac
tggtccactttcctccgtggctggccctgggaccaccctttcatttccat
ccttaatgaaagcagagctttgctgcatgcagcacgccgtgcgcacagca
catacagggcaggccaagtttgactccaggcctttgcgcgaagctctcaa
aggtccctactctgaggccaacacaatcatcccctcctgttccatttggt
ttccctttccattcttctcccagctcctttgaagtctcttctattccttt
cctccaggcacagtcagtagaagccacactcccaagaattggctagcctt
attctttttgtttcaaacggtgtctacaaacaggtcttgttaatacattc
tttgtt
gaattctgtgttaaaatggataactagagataattaaagactattgatct
gtgtaatgcatatgagcccagagagactgcatcagtatgcacaggcctgc
tccggtctgcatcagatggggtcctagagctggagggagaagtggacaaa
cgtctcatccccaattcagagctatctgcaggtgatagtttcctctgcac
tagtctcactggggaaacaaactactgtaaggataggcttcatgcccagt
agcagataccaacagaaaatgaactcagcagcatctttggaggttcctca
taatgtcttgtcgtggatcttccattattattattattttatttatatat
tctttctctgctcttttaaccttcaggtcctttgaatatatattatggct
tccaatgtatgggatttgtgagtgtgtgaactgtgggtctctttgggtgc
ttttccttctgtttgcttgttttgtctgactctggtgtgttagtttttgt
ttattatattatattattagtgcataaagaagtctgtttgttttttaatg
aaaaacagaagaggttggatcgagatgggtggagaggtgtggaggacctg
ggaagaacagcgagaaggggatattgtaatcaggttttattatgtgagaa
aaaacccctattttcaataaaaattgttgatcttatgaaaattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40807881_40809060
seq2: B6Ng01-225C07.b_49_1254

seq1  GAATTCTTAAAATAATAAGAGAAGTGCCAGTTGAAGAACAGATGCCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAATAATAAGAGAAGTGCCAGTTGAAGAACAGATGCCAGCT  50

seq1  AAACACAACTTTGACATTTTAGCCATTTTCAAGCATTGGTGTGAAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAACTTTGACATTTTAGCCATTTTCAAGCATTGGTGTGAAAAGTG  100

seq1  TTTTCCAGCATCGTGCCTATTGCCAGCCTTTGCCTGTTTGTTCCACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGCATCGTGCCTATTGCCAGCCTTTGCCTGTTTGTTCCACTTAC  150

seq1  ATCCTAACAAGTCTAGGCTGACAGTGACTCTCTGAAAGGGGTTAGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAACAAGTCTAGGCTGACAGTGACTCTCTGAAAGGGGTTAGTAGGG  200

seq1  CAGCCAGTCCTGTGAGAGTGTTGGAGGGCAACAGGCCCACAGACCTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTCCTGTGAGAGTGTTGGAGGGCAACAGGCCCACAGACCTGGAG  250

seq1  ATTTTTGGCTGTAAGTATTGTATTGCTCTTTTGAAGTTTCTCTCATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGCTGTAAGTATTGTATTGCTCTTTTGAAGTTTCTCTCATGGAG  300

seq1  TAGGAGTTTACTATTGTCTTGGAGGGCCCCGAGAACACCTGGTAATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTACTATTGTCTTGGAGGGCCCCGAGAACACCTGGTAATCTGC  350

seq1  TGTGGTGCAGAAGGGCAGGCATAGCCCTAGATGAAGCTGCTGAGCGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCAGAAGGGCAGGCATAGCCCTAGATGAAGCTGCTGAGCGTGCC  400

seq1  CTTGGTGCTCTAAATGGTGCTTGGTTTTAAGGAAGAAGTGAGTTTGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCTCTAAATGGTGCTTGGTTTTAAGGAAGAAGTGAGTTTGAGCA  450

seq1  GGCATCTTAGAGTCTCTAGGGACTGATCGTGGCTGACTTTGGCTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTAGAGTCTCTAGGGACTGATCGTGGCTGACTTTGGCTGCATCT  500

seq1  GAGAATGCCCAAAGACTACAAACATGCCACAGGGACATGCTTTTATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCCCAAAGACTACAAACATGCCACAGGGACATGCTTTTATTGTA  550

seq1  TGACCCAATGTTAACCAAATTATTACCATAGTTTAAACTGAAGTTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAATGTTAACCAAATTATTACCATAGTTTAAACTGAAGTTCTGTG  600

seq1  CCCCTTGTGCAAGGTCACACAGCAATAAGTGTCTGTATTTGGATTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTGCAAGGTCACACAGCAATAAGTGTCTGTATTTGGATTTGAAC  650

seq1  CCAAGCGGTTGGGTTTCTGAGTTCCACTCTTAACAAAGAGCCCAGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGGTTGGGTTTCTGAGTTCCACTCTTAACAAAGAGCCCAGAATTT  700

seq1  TGGAGTGATCTTGCGAGCAGGAAGTCCTCACTTTTGAGAAGTGCATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGATCTTGCGAGCAGGAAGTCCTCACTTTTGAGAAGTGCATAAAG  750

seq1  GTGGGTTGATGGTGTGCAGGGAGGAAGAAATGTCACCCTGGAGATTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGATGGTGTGCAGGGAGGAAGAAATGTCACCCTGGAGATTTCTT  800

seq1  CAGATCTCCCAGGTAACGAGACTTCTTTGGGACAT-CCTTTGGGCTAAAC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGATCTCCCAGGTAACGAGACTTCTTTGGGACATCCCTTTGGGCTAAAC  850

seq1  TGGT-CACTTTCCTCCGTGGCTGGCCCT-GGACCACC--TTCA-TTCCAT  894
      |||| ||||||||||||||||||||||| ||||||||  |||| ||||||
seq2  TGGTCCACTTTCCTCCGTGGCTGGCCCTGGGACCACCCTTTCATTTCCAT  900

seq1  CCTTAATGAAAGCAGAGCTTTGCTGCATGCAGCACG-CGTGCGCACAGCA  943
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTAATGAAAGCAGAGCTTTGCTGCATGCAGCACGCCGTGCGCACAGCA  950

seq1  CATACAGGGCAGGCCAAGTTGGACTCCAGGCCTTTGCGCGGAGCTCTCCA  993
      |||||||||||||||||||| ||||||||||||||||||| ||||||| |
seq2  CATACAGGGCAGGCCAAGTTTGACTCCAGGCCTTTGCGCGAAGCTCTCAA  1000

seq1  AGGTCCCTACTCTGAGGCCAACACAATCATCCCCTCCTGTTCCATTTGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTACTCTGAGGCCAACACAATCATCCCCTCCTGTTCCATTTGGT  1050

seq1  TTCCCTTTCCATTCTTCT-CCAGCTCCTT--GAGTCTC-TCTATTC--TT  1087
      |||||||||||||||||| ||||||||||   |||||| |||||||  ||
seq2  TTCCCTTTCCATTCTTCTCCCAGCTCCTTTGAAGTCTCTTCTATTCCTTT  1100

seq1  TCTCCA-GCACAG-CAG-AGAAG-CACACT-CCAAGAA-TGGCAAGCC--  1129
       ||||| |||||| ||| ||||| |||||| ||||||| |||| ||||  
seq2  CCTCCAGGCACAGTCAGTAGAAGCCACACTCCCAAGAATTGGCTAGCCTT  1150

seq1  --TATCTTTGTTTCAAAGGTTGTTTAC-AACA-GTCTTG-TAATACATTC  1174
        | | ||||||||||| | ||| ||| |||| |||||| ||||||||||
seq2  ATTCTTTTTGTTTCAAACGGTGTCTACAAACAGGTCTTGTTAATACATTC  1200

seq1  TTTGTT  1180
      ||||||
seq2  TTTGTT  1206

seq1: chr10_40990796_40991315
seq2: B6Ng01-225C07.g_243_764 (reverse)

seq1  TATAA-TTTCATAAGATCAACAATTTTTATTGAAAATA-GGGTTTTTTCT  48
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TATAATTTTCATAAGATCAACAATTTTTATTGAAAATAGGGGTTTTTTCT  50

seq1  CACATAATAAAACCTGATTACAATATCCCCTTCTCGCTGTTCTTCCCAGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATAAAACCTGATTACAATATCCCCTTCTCGCTGTTCTTCCCAGG  100

seq1  TCCTCCACACCTCTCCACCCATCTCGATCCAACCTCTTCTGTTTTTCATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACACCTCTCCACCCATCTCGATCCAACCTCTTCTGTTTTTCATT  150

seq1  AAAAAACAAACAGACTTCTTTATGCACTAATAATATAATATAATAAACAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAACAGACTTCTTTATGCACTAATAATATAATATAATAAACAA  200

seq1  AAACTAACACACCAGAGTCAGACAAAACAAGCAAACAGAAGGAAAAGCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACACACCAGAGTCAGACAAAACAAGCAAACAGAAGGAAAAGCAC  250

seq1  CCAAAGAGACCCACAGTTCACACACTCACAAATCCCATACATTGGAAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGACCCACAGTTCACACACTCACAAATCCCATACATTGGAAGCC  300

seq1  ATAATATATATTCAAAGGACCTGAAGGTTAAAAGAGCAGAGAAAGAATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATATTCAAAGGACCTGAAGGTTAAAAGAGCAGAGAAAGAATAT  350

seq1  ATAAATAAAATAATAATAATAATGGAAGATCCACGACAAGACATTATGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATAATAATAATAATGGAAGATCCACGACAAGACATTATGAG  400

seq1  GAACCTCCAAAGATGCTGCTGAGTTCATTTTCTGTTGGTATCTGCTACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAAAGATGCTGCTGAGTTCATTTTCTGTTGGTATCTGCTACTG  450

seq1  GGCATGAAGCCTATCCTTACAGTAGTTTGTTTCCCCAGTGAGACTAGTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAAGCCTATCCTTACAGTAGTTTGTTTCCCCAGTGAGACTAGTGC  500

seq1  AGAGGAAACTATCACCTGCAGA  520
      ||||||||||||||||||||||
seq2  AGAGGAAACTATCACCTGCAGA  522