BAC Information

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BAC

Clone NameB6Ng01-225E20
Chromosome10 (Build37)
Map Location 119,735,502 - 119,863,791
singlet/doubletdoublet
Overlap geneHmga2
Upstream geneCand1, Grip1, Helb, Irak3, Tmbim4, 1190005P17Rik
Downstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225E20.bB6Ng01-225E20.g
ACCGA039533GA039534
length1,1021,112
definitionB6Ng01-225E20.b B6Ng01-225E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,862,692 - 119,863,791)(119,735,502 - 119,736,610)
sequence
gaattctatttgcattgagagtcatctttttttttttttaatgaagtgtg
tatgtttctctatcttcccttctggccctatgggaaatttagttttgttt
taatttaattgcagtttcttaggatttttatccggaaaaagggttttgct
tttgaatcgtcctatgacgggtcaaactgcattcattggctttactgtgt
cttaattacaaattctgccgcggaaatccgtcctcgggttttctctcctg
gtgcccaggttgaagcgagccagccatgctttccaggcagctgtgatgac
tcgtggagttttcaatgacatcacgagatacacagttcagagacacaaga
gtctgttgttctgctcttttggccgcagagcacagttctccctgggaact
gtagccacagtactgggcttgagtttttattaatatccttgtagattgaa
aacaaaatattttcctccgagctttcattctcttccatctggcaaatgct
gcgatttgtcacatgagccgatgtgtgtctcattcccttgtttgcctgtg
ccctggtctctggaaggtgtatgctcctggggaataagtgagatggctgg
aatttgcaaggctggctgccccttccatattttcctgcctcaagtcacaa
taacagaaataataagaacagtggtgactaacagtacattttcaaaaccc
cgtggtcgggtaatgtcaagttgcgtgccacaagactacccttgttgaag
gggagtccctggattgcattgattaagaaaaagaccagattcttaagcat
gggtggcacgtgtaccccatggctgttgtgtaagcagcatgcaacatgaa
agggtgacccgtggagaagctggggtgctgagccagggttgcaaaggttg
ctcttaggctgtttccgactgacttgtccgttgaggtgaaggctctcagg
ctccctttgtccctcctgccatcatcttgtttcagctgctgtgggtaggt
caacacaacagctgctttctgtgtttccttcagctcttcgtccatcctgt
atcttgttaagagggagatctctttcaatccacctttctttgcaagcatc
ag
cccttctgccacagtgcttagctctctgtggtcatggactcagtgtggaa
tgtctcctcccatgggatcctgtgtatgaacactaggtccccacctggtg
gcacttgttgggaggtggaccctaacgggaggaaatgagtctctgggaca
ttctctgggtggcagtggtggtgtggtttataaaccagccccttttcttg
tcctgtccatttcctggtctctaggaacgagagcaagcagctgttctatg
cttctgttaccacagagccaagcctcccctgtcactgtcctcagaccacg
gttctaaatgaagctctcctgcttttagtcaggtattggataacagcgga
gagcccagtggcgaataagcccattgcgtcagcttttgccacatcctaaa
gacgtgggtcctgtcttctgctgaatggactctgaggatggaagaagagg
tggctctggcttgtcgcccaggaaaagagcttcatgagactgtccagttg
aatttattggctggcaagattgctatattatgtctggaaatggaggcaga
atgtcagagaaatgttactataccccacagccttgtgtgcagggtaaatc
aagtataggatgaaattgagccatgaatctgacccagtcattgttgtacc
tcgtgagggccaaatatcaggtgcataaagactgaaagagcaaacaccca
tggaaaggagttacagagacaaagtttggagctgagacaaaaggatggac
catctagagattgccatatccagggatccatcccataatcagcctccaaa
cgctgacaccattgcatacactagcaagattttgctgaaaccattgcata
cactagcaagattttgctgaaaggaccctgatatagctgtctcttgtgag
actatgccggggccctagcaaacacagaagtggatgatcacagtcagctt
attggattggatcaccaggtcccccaatgggaggagcttagaagaaagtt
acccaggagctaaagggatctgcaacctaatagtggaacaacatatgact
acccagtaccccgagctctgattctagttgcattatgtatcaaaagatgc
ctagtcggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_119862692_119863791
seq2: B6Ng01-225E20.b_32_1133 (reverse)

seq1  CTGATGCCCTGC-AAGAAAGGTGGATTGAGAG-GATCTCCCTTCTAAC-A  47
      |||||| | ||| |||||||||||||||| || |||||||||  |||| |
seq2  CTGATG-CTTGCAAAGAAAGGTGGATTGAAAGAGATCTCCCTCTTAACAA  49

seq1  GATACAGGATGGACGAAGGAGCTGAAGGGAACACAG-AAGCAGCTGTTGT  96
      ||||||||||||||||| |||||||||| ||||||| |||||||||||||
seq2  GATACAGGATGGACGAA-GAGCTGAAGGAAACACAGAAAGCAGCTGTTGT  98

seq1  GTGGACCTACCCACAGCAGCCTGAACAAGATGATGGCAGGAGGGACAAAG  146
      || |||||||||||||||||   |||||||||||||||||||||||||||
seq2  GTTGACCTACCCACAGCAGCTGAAACAAGATGATGGCAGGAGGGACAAAG  148

seq1  GGAGCCTGAGAGCCTTCACCTCAACGGACAAGTCAGTCGGAAACAGCCTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGAGAGCCTTCACCTCAACGGACAAGTCAGTCGGAAACAGCCTA  198

seq1  AGAGCAACCTTTGCAACCCTGGCTCAGCACCCCAGCTTCTCCACGGGTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACCTTTGCAACCCTGGCTCAGCACCCCAGCTTCTCCACGGGTCA  248

seq1  CCCTTTCATGTTGCATGCTGCTTACACAACAGCCATGGGGTACACGTGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCATGTTGCATGCTGCTTACACAACAGCCATGGGGTACACGTGCC  298

seq1  ACCCATGCTTAAGAATCTGGTCTTTTTCTTAATCAATGCAATCCAGGGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCTTAAGAATCTGGTCTTTTTCTTAATCAATGCAATCCAGGGAC  348

seq1  TCCCCTTCAACAAGGGTAGTCTTGTGGCACGCAACTTGACATTACCCGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCAACAAGGGTAGTCTTGTGGCACGCAACTTGACATTACCCGAC  398

seq1  CACGGGGTTTTGAAAATGTACTGTTAGTCACCACTGTTCTTATTATTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGTTTTGAAAATGTACTGTTAGTCACCACTGTTCTTATTATTTCT  448

seq1  GTTATTGTGACTTGAGGCAGGAAAATATGGAAGGGGCAGCCAGCCTTGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTGACTTGAGGCAGGAAAATATGGAAGGGGCAGCCAGCCTTGCA  498

seq1  AATTCCAGCCATCTCACTTATTCCCCAGGAGCATACACCTTCCAGAGACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCCATCTCACTTATTCCCCAGGAGCATACACCTTCCAGAGACC  548

seq1  AGGGCACAGGCAAACAAGGGAATGAGACACACATCGGCTCATGTGACAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGCAAACAAGGGAATGAGACACACATCGGCTCATGTGACAAA  598

seq1  TCGCAGCATTTGCCAGATGGAAGAGAATGAAAGCTCGGAGGAAAATATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGCATTTGCCAGATGGAAGAGAATGAAAGCTCGGAGGAAAATATTT  648

seq1  TGTTTTCAATCTACAAGGATATTAATAAAAACTCAAGCCCAGTACTGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAATCTACAAGGATATTAATAAAAACTCAAGCCCAGTACTGTGG  698

seq1  CTACAGTTCCCAGGGAGAACTGTGCTCTGCGGCCAAAAGAGCAGAACAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTCCCAGGGAGAACTGTGCTCTGCGGCCAAAAGAGCAGAACAAC  748

seq1  AGACTCTTGTGTCTCTGAACTGTGTATCTCGTGATGTCATTGAAAACTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTGTGTCTCTGAACTGTGTATCTCGTGATGTCATTGAAAACTCC  798

seq1  ACGAGTCATCACAGCTGCCTGGAAAGCATGGCTGGCTCGCTTCAACCTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCATCACAGCTGCCTGGAAAGCATGGCTGGCTCGCTTCAACCTGG  848

seq1  GCACCAGGAGAGAAAACCCGAGGACGGATTTCCGCGGCAGAATTTGTAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGAGAGAAAACCCGAGGACGGATTTCCGCGGCAGAATTTGTAAT  898

seq1  TAAGACACAGTAAAGCCAATGAATGCAGTTTGACCCGTCATAGGACGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGTAAAGCCAATGAATGCAGTTTGACCCGTCATAGGACGATT  948

seq1  CAAAAGCAAAACCCTTTTTCCGGATAAAAATCCTAAGAAACTGCAATTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAAACCCTTTTTCCGGATAAAAATCCTAAGAAACTGCAATTAA  998

seq1  ATTAAAACAAAACTAAATTTCCCATAGGGCCAGAAGGGAAGATAGAGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAAAACTAAATTTCCCATAGGGCCAGAAGGGAAGATAGAGAAA  1048

seq1  CATACACACTTCATTAAAAAAAAAAAAAGATGACTCTCAATGCAAATAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACTTCATTAAAAAAAAAAAAAGATGACTCTCAATGCAAATAGA  1098

seq1  ATTC  1100
      ||||
seq2  ATTC  1102

seq1: chr10_119735502_119736610
seq2: B6Ng01-225E20.g_68_1179

seq1  CCCTTCTGCCACAGTGCTTAGCTCTCTGTGGTCATGGACTCAGTGTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCCACAGTGCTTAGCTCTCTGTGGTCATGGACTCAGTGTGGAA  50

seq1  TGTCTCCTCCCATGGGATCCTGTGTATGAACACTAGGTCCCCACCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCCCATGGGATCCTGTGTATGAACACTAGGTCCCCACCTGGTG  100

seq1  GCACTTGTTGGGAGGTGGACCCTAACGGGAGGAAATGAGTCTCTGGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTGGGAGGTGGACCCTAACGGGAGGAAATGAGTCTCTGGGACA  150

seq1  TTCTCTGGGTGGCAGTGGTGGTGTGGTTTATAAACCAGCCCCTTTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGTGGCAGTGGTGGTGTGGTTTATAAACCAGCCCCTTTTCTTG  200

seq1  TCCTGTCCATTTCCTGGTCTCTAGGAACGAGAGCAAGCAGCTGTTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCATTTCCTGGTCTCTAGGAACGAGAGCAAGCAGCTGTTCTATG  250

seq1  CTTCTGTTACCACAGAGCCAAGCCTCCCCTGTCACTGTCCTCAGACCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTACCACAGAGCCAAGCCTCCCCTGTCACTGTCCTCAGACCACG  300

seq1  GTTCTAAATGAAGCTCTCCTGCTTTTAGTCAGGTATTGGATAACAGCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAATGAAGCTCTCCTGCTTTTAGTCAGGTATTGGATAACAGCGGA  350

seq1  GAGCCCAGTGGCGAATAAGCCCATTGCGTCAGCTTTTGCCACATCCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGTGGCGAATAAGCCCATTGCGTCAGCTTTTGCCACATCCTAAA  400

seq1  GACGTGGGTCCTGTCTTCTGCTGAATGGACTCTGAGGATGGAAGAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGTCCTGTCTTCTGCTGAATGGACTCTGAGGATGGAAGAAGAGG  450

seq1  TGGCTCTGGCTTGTCGCCCAGGAAAAGAGCTTCATGAGACTGTCCAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGGCTTGTCGCCCAGGAAAAGAGCTTCATGAGACTGTCCAGTTG  500

seq1  AATTTATTGGCTGGCAAGATTGCTATATTATGTCTGGAAATGGAGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTGGCTGGCAAGATTGCTATATTATGTCTGGAAATGGAGGCAGA  550

seq1  ATGTCAGAGAAATGTTACTATACCCCACAGCCTTGTGTGCAGGGTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAGAAATGTTACTATACCCCACAGCCTTGTGTGCAGGGTAAATC  600

seq1  AAGTATAGGATGAAATTGAGCCATGAATCTGACCCAGTCATTGTTGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGGATGAAATTGAGCCATGAATCTGACCCAGTCATTGTTGTACC  650

seq1  TCGTGAGGGCCAAATATCAGGTGCATAAAGACTGAAAGAGCAAACACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGGGCCAAATATCAGGTGCATAAAGACTGAAAGAGCAAACACCCA  700

seq1  TGG-AAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGAC  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGAC  750

seq1  CATCTAGAGATTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGAGATTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCAAA  800

seq1  CGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAACCATTGCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAACCATTGCATA  850

seq1  CACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAG  900

seq1  ACTATGCCGGGG-CCTAGCAAACACAGAAGTGGATGATCACAGTCAGC-T  947
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  ACTATGCCGGGGCCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCTT  950

seq1  ATTGGA-TGGATCA-CAGGGCCCCCAAT-GGAGGAGC-TAG-AGAAAGTA  992
      |||||| ||||||| |||| |||||||| |||||||| ||| ||||||| 
seq2  ATTGGATTGGATCACCAGGTCCCCCAATGGGAGGAGCTTAGAAGAAAGTT  1000

seq1  CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGA  1042
       || |||||||||||||||||||||||  ||| |||||||||| ||||| 
seq2  ACCCAGGAGCTAAAGGGATCTGCAACCTAATA-GTGGAACAAC-ATATG-  1047

seq1  ACTAACCAGTACCCCGGAGCTCTTGATTCTAGTTGCA-TATGTATCAAAA  1091
      |||| |||||||||| |||||| |||||||||||||| ||||||||||||
seq2  ACTACCCAGTACCCC-GAGCTC-TGATTCTAGTTGCATTATGTATCAAAA  1095

seq1  GATGGCCTAGTCGGCCAT  1109
      ||| ||||||||||||||
seq2  GAT-GCCTAGTCGGCCAT  1112