BAC Information

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BAC

Clone NameB6Ng01-225L11
Chromosome10 (Build37)
Map Location 110,578,225 - 110,769,211
singlet/doubletdoublet
Overlap geneLOC667904, Osbpl8, Bbs10
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502
Downstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225L11.bB6Ng01-225L11.g
ACCGA039841GA039842
length1,062929
definitionB6Ng01-225L11.b B6Ng01-225L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,768,168 - 110,769,211)(110,578,225 - 110,579,151)
sequence
gaattctctccccccctcacccccccaaagcattcacccctggatcttgg
acccacctggctgaccaggctcatgccaccacctctgccgctggcgttgg
cactgccactgtagctgaccggtgacccaggaacccagctgcctgtccct
cacaggctgcccagacctctttgcttctcttctaagatctgtgacactcc
cggcatttctagcctgactggagccccatggaacctgcttctcagtcttc
tctctggcacacagaggcttctaattcctcagagggaagacagtcaaggt
gtaaatctgattaagatttttccttcttaaagatcatccagtacataggg
aagcaaataccagttccccggctcgtatatcgtttgtgatctggctccgt
cttgcttattttaacctctccctttacgacacccaactctgtgtcgaaac
tactggaaatttcagaaccctcagtgctcccagtgctcctcccactcttg
ctgtgtcagatagctttctatgactttaaacaataacttagaaatagaac
tcaccctgtgccctccccttcccgccttgctagtctcctgcattgttcca
ggtctcttgaatgtcatgtatgacacatgtggtcttatgtatgtatgtgt
aatctatgatcccataaatgaggaaaacacatgatacctgtctctttctc
tttaaagccactataaatcacaatgtattcatcacagttcaaaattggta
gaggttttcagtccaggacaagttggctttactgttctgggcaacattca
agctgcaatgtatggtataataaaactggttcctttcatggcctaggtgg
tttagaggaaagattgagaggatggggggaggcacacagacacagcctgg
gttccacgtcttcccttgtccagttccacagggctcaatcatcctgaaag
atctccaactcggcccatccctcaaaagcattaacatcttcccagaagtc
accttggggtagcagtatttcatcattattgtcctttggggggtctctgg
caattctctata
gaattcaaatctaataaaactccatacattgcatttagttgacaggtctg
atgaatctactctaatcacagcaatatactttttccctgcctcaagtgct
ggggttacaggtgtgcaccactcccctggtttaggggtattggggattaa
atacttgcatgtatacgagtactttactaacagatatgttttcagcccta
tagtattttctgtcttttcttttttttttttttttttttttttttttcca
ggtagggtttcaggtagcaaaagccggcctggaatttgctattgtagacc
aggttatcatctgccacttaatgagtaggcggctaccctgggctgcatga
gaccctgtctcaacaaacaaacctgcaactatgtatcacccccactccga
agtaatctttctgggttttatctcccatgagtttgcgattcaaatttata
tatacctgtcttacttgtcattaataaaggtcattttgctctaaaatttt
ccctgtccttagtttagatattttcaaatgatgtgctttagcaatttaag
aaagtaacgcaaagtgattgagacagtaaagatagcagtttagatgcaaa
taatatctacaaagatttggctaattatgaaagtgaaattagtttaatac
tgtaagaccactgagtgtctgtgatggtttgtatataattggcccaggga
gtggcactattaaaaagttatggccctattggaaaaggtgtgacctcaga
gtaggtgtgtcacttgtgggcatggccttaagaccttcaacctggctgcc
ttggaagccagtattcttgctagtagccttcagtgaagatgtacactctc
agctccttcctgcaccatgcctgcctgaaggctgccatattatgtactga
cctctgaatcttgtaagccagcccattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110768168_110769211
seq2: B6Ng01-225L11.b_47_1108 (reverse)

seq1  TATAG-GAATTG-CAGTGACCCCCCAAAGGACAGT-ATGGTG-AATACTT  46
      ||||| |||||| ||| |||||||||||||||| | ||| || ||||| |
seq2  TATAGAGAATTGCCAGAGACCCCCCAAAGGACAATAATGATGAAATAC-T  49

seq1  GCT--CCCCAGGTGACTACTGGG-AGATGGTAAATGC-TTTGGGGGATGG  92
      |||  ||| |||||||| ||||| |||| || ||||| |||| |||||||
seq2  GCTACCCCAAGGTGACTTCTGGGAAGAT-GTTAATGCTTTTGAGGGATGG  98

seq1  GCCGAGTTGG-GATCTTTCA-GATGATTGAG-CCTGTGG-ACTTGAC-AG  137
      |||||||||| ||||||||| |||||||||| ||||||| ||| ||| ||
seq2  GCCGAGTTGGAGATCTTTCAGGATGATTGAGCCCTGTGGAACTGGACAAG  148

seq1  GGA--GCGTGG-ACCCAGGCTGTGTCTGTCTGCCT-CCCCCATCCTCTCA  183
      |||   ||||| ||||||||||||||||| ||||| ||||||||||||||
seq2  GGAAGACGTGGAACCCAGGCTGTGTCTGTGTGCCTCCCCCCATCCTCTCA  198

seq1  ATCTTTCCTCT-AACCACCTAGGCCATGAAAGG-ACCAGTTTTATTATAC  231
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ATCTTTCCTCTAAACCACCTAGGCCATGAAAGGAACCAGTTTTATTATAC  248

seq1  CATACATTGCAGCTTGAATGTTGCCCAGAACAGTAAAGCCAACTTGTCCT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTGCAGCTTGAATGTTGCCCAGAACAGTAAAGCCAACTTGTCCT  298

seq1  GGACTG-AAACCTCTACCAATTTTGAACTGTGATGAATACATTGTGATTT  330
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAAACCTCTACCAATTTTGAACTGTGATGAATACATTGTGATTT  348

seq1  ATAGTGGCTTTAAAGAGAAAGAGACAGGTATCATGTGTTTTCCTCATTTA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGCTTTAAAGAGAAAGAGACAGGTATCATGTGTTTTCCTCATTTA  398

seq1  TGGGATCATAGATTACACATACATACATAAGACCACATGTGTCATACATG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCATAGATTACACATACATACATAAGACCACATGTGTCATACATG  448

seq1  ACATTCAAGAGACCTGGAACAATGCAGGAGACTAGCAAGGCGGGAAGGGG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAGAGACCTGGAACAATGCAGGAGACTAGCAAGGCGGGAAGGGG  498

seq1  AGGGCACAGGGTGAGTTCTATTTCTAAGTTATTGTTTAAAGTCATAGAAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGTGAGTTCTATTTCTAAGTTATTGTTTAAAGTCATAGAAA  548

seq1  GCTATCTGACACAGCAAGAGTGGGAGGAGCACTGGGAGCACTGAGGGTTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGACACAGCAAGAGTGGGAGGAGCACTGGGAGCACTGAGGGTTC  598

seq1  TGAAATTTCCAGTAGTTTCGACACAGAGTTGGGTGTCGTAAAGGGAGAGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCCAGTAGTTTCGACACAGAGTTGGGTGTCGTAAAGGGAGAGG  648

seq1  TTAAAATAAGCAAGACGGAGCCAGATCACAAACGATATACGAGCCGGGGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAGCAAGACGGAGCCAGATCACAAACGATATACGAGCCGGGGA  698

seq1  ACTGGTATTTGCTTCCCTATGTACTGGATGATCTTTAAGAAGGAAAAATC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTATTTGCTTCCCTATGTACTGGATGATCTTTAAGAAGGAAAAATC  748

seq1  TTAATCAGATTTACACCTTGACTGTCTTCCCTCTGAGGAATTAGAAGCCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGATTTACACCTTGACTGTCTTCCCTCTGAGGAATTAGAAGCCT  798

seq1  CTGTGTGCCAGAGAGAAGACTGAGAAGCAGGTTCCATGGGGCTCCAGTCA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCAGAGAGAAGACTGAGAAGCAGGTTCCATGGGGCTCCAGTCA  848

seq1  GGCTAGAAATGCCGGGAGTGTCACAGATCTTAGAAGAGAAGCAAAGAGGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAATGCCGGGAGTGTCACAGATCTTAGAAGAGAAGCAAAGAGGT  898

seq1  CTGGGCAGCCTGTGAGGGACAGGCAGCTGGGTTCCTGGGTCACCGGTCAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCCTGTGAGGGACAGGCAGCTGGGTTCCTGGGTCACCGGTCAG  948

seq1  CTACAGTGGCAGTGCCAACGCCAGCGGCAGAGGTGGTGGCATGAGCCTGG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGGCAGTGCCAACGCCAGCGGCAGAGGTGGTGGCATGAGCCTGG  998

seq1  TCAGCCAGGTGGGTCCAAGATCCAGGGGTGAATGCTTTGGGGGGGTGAGG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGGTGGGTCCAAGATCCAGGGGTGAATGCTTTGGGGGGGTGAGG  1048

seq1  GGGGGAGAGAATTC  1044
      ||||||||||||||
seq2  GGGGGAGAGAATTC  1062

seq1: chr10_110578225_110579151
seq2: B6Ng01-225L11.g_66_994

seq1  GAATTCAAATCTAATAAAACTCCATACATTGCATTTAGTTGACAGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTAATAAAACTCCATACATTGCATTTAGTTGACAGGTCTG  50

seq1  ATGAATCTACTCTAATCACAGCAATATACTTTTTCCCTGCCTCAAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTACTCTAATCACAGCAATATACTTTTTCCCTGCCTCAAGTGCT  100

seq1  GGGGTTACAGGTGTGCACCACTCCCCTGGTTTAGGGGTATTGGGGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTACAGGTGTGCACCACTCCCCTGGTTTAGGGGTATTGGGGATTAA  150

seq1  ATACTTGCATGTATACGAGTACTTTACTAACAGATATGTTTTCAGCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCATGTATACGAGTACTTTACTAACAGATATGTTTTCAGCCCTA  200

seq1  TAGTATTTTCTGTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTCTGTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCA  250

seq1  GGTAGGGTTTCAGGTAGCAAAAGCCGGCCTGGAATTTGCTATTGTAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTTTCAGGTAGCAAAAGCCGGCCTGGAATTTGCTATTGTAGACC  300

seq1  AGGTTATCATCTGCCACTTAATGAGTAGGCGGCTACCCTGGGCTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCATCTGCCACTTAATGAGTAGGCGGCTACCCTGGGCTGCATGA  350

seq1  GACCCTGTCTCAACAAACAAACCTGCAACTATGTATCACCACCACTCCGA  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACCCTGTCTCAACAAACAAACCTGCAACTATGTATCACCCCCACTCCGA  400

seq1  AGTAATCTTTCTGGGTTTTATCTCCCATGAGTTTGCGATTCAGATTTATA  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTAATCTTTCTGGGTTTTATCTCCCATGAGTTTGCGATTCAAATTTATA  450

seq1  TATACCTGTCTTACTTGTCATTAATAAAGGTCATTTTGCTCTAAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGTCTTACTTGTCATTAATAAAGGTCATTTTGCTCTAAAATTTT  500

seq1  CCCTGTCCTTAGTTTAGATATTTTCAAATGATGTGCTTTAGCAATTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTTAGTTTAGATATTTTCAAATGATGTGCTTTAGCAATTTAAG  550

seq1  AAAGTAACGCAAAGTGATTGAGACAGTAAAGATAGCAGTTTAGATGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACGCAAAGTGATTGAGACAGTAAAGATAGCAGTTTAGATGCAAA  600

seq1  TAATATCTACAAAGATTTGGCTAATTATGAAAGTGAAATTAGTTTAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTACAAAGATTTGGCTAATTATGAAAGTGAAATTAGTTTAATAC  650

seq1  TGTAAGACCACTGAGTGTCTGTGATGGTTTGTATATAATTGGCCCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACCACTGAGTGTCTGTGATGGTTTGTATATAATTGGCCCAGGGA  700

seq1  GTGGCACTATT-AGAAGTTATGGCCCTATTGGAAAAGGTGTGACCTCAGA  749
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTATTAAAAAGTTATGGCCCTATTGGAAAAGGTGTGACCTCAGA  750

seq1  GTAGGTGTGTCAC-TGTGGGCATGGCCTTAAGACCCTCAACCTGGCTGCC  798
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GTAGGTGTGTCACTTGTGGGCATGGCCTTAAGACCTTCAACCTGGCTGCC  800

seq1  -TGGAAGCCAGTATTC-TGCTAGTAGCCTTCAGTGAAGATGTACAACTCT  846
       ||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TTGGAAGCCAGTATTCTTGCTAGTAGCCTTCAGTGAAGATGTAC-ACTCT  849

seq1  CAGCTCC-TCCTGCACCATGCCTGCCTGAAGGCTGCCATATAATGGACTG  895
      ||||||| ||||||||||||||||||||||||||||||||| ||| ||||
seq2  CAGCTCCTTCCTGCACCATGCCTGCCTGAAGGCTGCCATATTATGTACTG  899

seq1  AACCTCTGAA-CCTGTAAGCCAGCCCCAATTAA  927
       ||||||||| | |||||||||||||  |||||
seq2  -ACCTCTGAATCTTGTAAGCCAGCCC--ATTAA  929