BAC Information

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BAC

Clone NameB6Ng01-226O16
Chromosome10 (Build37)
Map Location 12,273,546 - 12,410,599
singlet/doubletdoublet
Overlap geneUtrn
Upstream geneEG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226O16.bB6Ng01-226O16.g
ACCGA040722GA040723
length7581,025
definitionB6Ng01-226O16.b B6Ng01-226O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,273,546 - 12,274,303)(12,409,582 - 12,410,599)
sequence
gaattcacaataagctccatttggacaggaaacatgtaaagaaatgatgg
cagattcacgcattaaggaacacagaaaagtggataggctggcaaataaa
tagtgcacagagagaaataagccatatgtgtatcttcaaaggggaggagg
atgataaaagctttatttagtaataatctatggtaaacggaacaatcaaa
tgatagaaataatggctatcactcagaaaaaatgtagaaatggacatgga
gagataaaatttatcttaaatctccttgatttaaattgaaaaacattttt
ttacctgatcatgtaatattttttttcacacaaaatgaagtccactagaa
cactcccaagtaaaccatgttcatccttttaggtcgctctccataccaca
atggcagcatcattttacttgacagttaataacacagcacacaatctttc
ccccccccctccctgaaagtctcagaagttttgaagtgccagatggtcca
ccattctaacaaatcagccctcaataaaaactggcctcagcagaacaggg
tttacaaatggcaaacttttctaaaggccacaaggacaaagcccttttgt
tctgaaaagttactctgtaaccagcaacacctgcttatttaaatgataac
tgtgtctaaataggcaactatatcattctagcttctctctcttcaaagtg
atctttacttctgttatcatcagatacatgatactgtatgctatacattg
tgtgtgtg
gaattcaacgaggtgctggagagctaccagcttctgtgcaatagaattcg
agggaagtgccacacactggaggtaagagcttgtttgccccagggctacc
atcctgagatcccagctctgctgtgtggatttccctgtcttatttaaaaa
aaagaagaagaagaagaaagaaagcgccattactttgtcaaacattggat
tataaaagtaatttttatggaccaagtagataaaaaaatagagagatttt
tgtttgttttgtgttaaaaggagaccaagatctgcctgcatttctcagga
ggttcaatggtgataattgatccccgcaggtttgtgtgctcactagtgtt
ctcaggttaccataagaatccagacagctctcttttacctggctgactgt
tattttatttttattttgagtcgtgtctaatatttactggaggggaaaaa
gaatttcagtatgtagagatttcattgcatttttaggtggagaatctcac
tgcctatcagactgaagacctagattattctgtgggattattttaataaa
gtgctttctcatcttcatggttaaaaaaaaactggtcaaaagtcttaaga
agcgttttgagttattcaaatttaaatgaaacacaccctacaataagcaa
ttacattctggtgagttctgataatgccgagggaagatttaaactgagtt
tactcattgtacttcttgtaagatctgagcagatttttcggcctgcttct
tgtaagattaatgggagaaggggactagaaatctctttcttcttttgctc
tgaaccaagagtcaacaaattatggtagaggcctcaggtataaattgtgt
agtttgagctaggcaatggtgttctatgcctttaatcccagcaccctgaa
agggagaagcatctctgagcccaaggccagcctggcctacacctgaggtc
tggaacagccagggccacaatagaagaaaaccctgcctctgaaaaaaaaa
gttgggtttttttttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12273546_12274303
seq2: B6Ng01-226O16.b_45_802

seq1  GAATTCACAATAAGCTCCATTTGGACAGGAAACATGTAAAGAAATGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATAAGCTCCATTTGGACAGGAAACATGTAAAGAAATGATGG  50

seq1  CAGATTCACGCATTAAGGAACACAGAAAAGTGGATAGGCTGGCAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCACGCATTAAGGAACACAGAAAAGTGGATAGGCTGGCAAATAAA  100

seq1  TAGTGCACAGAGAGAAATAAGCCATATGTGTATCTTCAAAGGGGAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCACAGAGAGAAATAAGCCATATGTGTATCTTCAAAGGGGAGGAGG  150

seq1  ATGATAAAAGCTTTATTTAGTAATAATCTATGGTAAACGGAACAATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAAGCTTTATTTAGTAATAATCTATGGTAAACGGAACAATCAAA  200

seq1  TGATAGAAATAATGGCTATCACTCAGAAAAAATGTAGAAATGGACATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAATAATGGCTATCACTCAGAAAAAATGTAGAAATGGACATGGA  250

seq1  GAGATAAAATTTATCTTAAATCTCCTTGATTTAAATTGAAAAACATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAATTTATCTTAAATCTCCTTGATTTAAATTGAAAAACATTTTT  300

seq1  TTACCTGATCATGTAATATTTTTTTTCACACAAAATGAAGTCCACTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGATCATGTAATATTTTTTTTCACACAAAATGAAGTCCACTAGAA  350

seq1  CACTCCCAAGTAAACCATGTTCATCCTTTTAGGTCGCTCTCCATACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAAGTAAACCATGTTCATCCTTTTAGGTCGCTCTCCATACCACA  400

seq1  ATGGCAGCATCATTTTACTTGACAGTTAATAACACAGCACACAATCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCATCATTTTACTTGACAGTTAATAACACAGCACACAATCTTTC  450

seq1  CCCCCCCCCTCCCTGAAAGTCTCAGAAGTTTTGAAGTGCCAGATGGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTCCCTGAAAGTCTCAGAAGTTTTGAAGTGCCAGATGGTCCA  500

seq1  CCATTCTAACAAATCAGCCCTCAATAAAAACTGGCCTCAGCAGAACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAACAAATCAGCCCTCAATAAAAACTGGCCTCAGCAGAACAGGG  550

seq1  TTTACAAATGGCAAACTTTTCTAAAGGCCACAAGGACAAAGCCCTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATGGCAAACTTTTCTAAAGGCCACAAGGACAAAGCCCTTTTGT  600

seq1  TCTGAAAAGTTACTCTGTAACCAGCAACACCTGCTTATTTAAATGATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGTTACTCTGTAACCAGCAACACCTGCTTATTTAAATGATAAC  650

seq1  TGTGTCTAAATAGGCAACTATATCATTCTAGCTTCTCTCTCTTCAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAAATAGGCAACTATATCATTCTAGCTTCTCTCTCTTCAAAGTG  700

seq1  ATCTTTACTTCTGTTATCATCAGATACATGATACTGTATGCTATACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTTCTGTTATCATCAGATACATGATACTGTATGCTATACATTG  750

seq1  TGTGTGTG  758
      ||||||||
seq2  TGTGTGTG  758

seq1: chr10_12409582_12410599
seq2: B6Ng01-226O16.g_66_1090 (reverse)

seq1  CCCCCCCCCCAAAAAAAA--CCAACTTTTTTTTTCAG-GGCAGGGTTT--  45
      ||||||||||||||||||  ||||||||||||||||| ||||||||||  
seq2  CCCCCCCCCCAAAAAAAAACCCAACTTTTTTTTTCAGAGGCAGGGTTTTC  50

seq1  CTCTA-TGTGGCCCTGGCTGTTCCAGACCTCAGGTGTAGGCCAGGCTGGC  94
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGTGGCCCTGGCTGTTCCAGACCTCAGGTGTAGGCCAGGCTGGC  100

seq1  CTTGGGCTCAGAGATGCTTCTCCC-TTCAGGGTGCTGGGATTAAAGGCAT  143
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTGGGCTCAGAGATGCTTCTCCCTTTCAGGGTGCTGGGATTAAAGGCAT  150

seq1  AGAACACCATTGCCTAGCTCAAACTACACAATTTATACCTGAGGCCTCTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCATTGCCTAGCTCAAACTACACAATTTATACCTGAGGCCTCTA  200

seq1  CCATAATTTGTTGACTCTTGGTTCAGAGCAAAAGAAGAAAGAGATTTCTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATTTGTTGACTCTTGGTTCAGAGCAAAAGAAGAAAGAGATTTCTA  250

seq1  GTCCCCTTCTCCCATTAATCTTACAAGAAGCAGGCCGAAAAATCTGCTCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTCTCCCATTAATCTTACAAGAAGCAGGCCGAAAAATCTGCTCA  300

seq1  GATCTTACAAGAAGTACAATGAGTAAACTCAGTTTAAATCTTCCCTCGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTACAAGAAGTACAATGAGTAAACTCAGTTTAAATCTTCCCTCGGC  350

seq1  ATTATCAGAACTCACCAGAATGTAATTGCTTATTGTAGGGTGTGTTTCAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGAACTCACCAGAATGTAATTGCTTATTGTAGGGTGTGTTTCAT  400

seq1  TTAAATTTGAATAACTCAAAACGCTTCTTAAGACTTTTGACCAGTTTTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGAATAACTCAAAACGCTTCTTAAGACTTTTGACCAGTTTTTT  450

seq1  TTTAACCATGAAGATGAGAAAGCACTTTATTAAAATAATCCCACAGAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCATGAAGATGAGAAAGCACTTTATTAAAATAATCCCACAGAATA  500

seq1  ATCTAGGTCTTCAGTCTGATAGGCAGTGAGATTCTCCACCTAAAAATGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGTCTTCAGTCTGATAGGCAGTGAGATTCTCCACCTAAAAATGCA  550

seq1  ATGAAATCTCTACATACTGAAATTCTTTTTCCCCTCCAGTAAATATTAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTCTACATACTGAAATTCTTTTTCCCCTCCAGTAAATATTAGA  600

seq1  CACGACTCAAAATAAAAATAAAATAACAGTCAGCCAGGTAAAAGAGAGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACTCAAAATAAAAATAAAATAACAGTCAGCCAGGTAAAAGAGAGCT  650

seq1  GTCTGGATTCTTATGGTAACCTGAGAACACTAGTGAGCACACAAACCTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATTCTTATGGTAACCTGAGAACACTAGTGAGCACACAAACCTGC  700

seq1  GGGGATCAATTATCACCATTGAACCTCCTGAGAAATGCAGGCAGATCTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAATTATCACCATTGAACCTCCTGAGAAATGCAGGCAGATCTTG  750

seq1  GTCTCCTTTTAACACAAAACAAACAAAAATCTCTCTATTTTTTTATCTAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTTAACACAAAACAAACAAAAATCTCTCTATTTTTTTATCTAC  800

seq1  TTGGTCCATAAAAATTACTTTTATAATCCAATGTTTGACAAAGTAATGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCATAAAAATTACTTTTATAATCCAATGTTTGACAAAGTAATGGC  850

seq1  GCTTTCTTTCTTCTTCTTCTTCTTTTTTTTAAATAAGACAGGGAAATCCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTCTTCTTCTTCTTCTTTTTTTTAAATAAGACAGGGAAATCCA  900

seq1  CACAGCAGAGCTGGGATCTCAGGATGGTAGCCCTGGGGCAAACAAGCTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAGCTGGGATCTCAGGATGGTAGCCCTGGGGCAAACAAGCTCT  950

seq1  TACCTCCAGTGTGTGGCACTTCCCTCGAATTCTATTGCACAGAAGCTGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAGTGTGTGGCACTTCCCTCGAATTCTATTGCACAGAAGCTGGT  1000

seq1  AGCTCTCCAGCACCTCGTTGAATTC  1018
      |||||||||||||||||||||||||
seq2  AGCTCTCCAGCACCTCGTTGAATTC  1025