BAC Information

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BAC

Clone NameB6Ng01-227E23
Chromosome10 (Build37)
Map Location 19,098,292 - 19,219,007
singlet/doubletdoublet
Overlap genenone
Upstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
Downstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E23.bB6Ng01-227E23.g
ACCGA041012GA041013
length4611,106
definitionB6Ng01-227E23.b B6Ng01-227E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,098,292 - 19,098,758)(19,217,911 - 19,219,007)
sequence
catctatttgaaaatctacagtgcacgcaatcctcattcatattatatat
tgtattctacaagtgagactctcggctctgtaaagtatggtctaacaaat
atgctaatagtaagtttttggtagaccagaccattgttgttctataaagc
cagctgcttctcagtaagacagtccacatcgctattgccaaatctcatgg
gtattttctcatttctctacattgttttaaagaccattcttctgttcaga
agaaatattggctgagaaatagatataatttttaaaaagtccaccaggtg
gtggcattggcagaagacttaaaggaaaagaaagaacatgaatagcaggc
attcttggtaatggaacataaagaaatcaatttggaaataggttgggact
ttttccctcctggacagttttttgttgttgttggtttggtttgggttttg
ttgttgttgtt
gaattcatgtctgtaaaatgtattggtgctaatgtgggcttggaagtcat
ccattctgggttgaatttcctaacaaatcccatttgttaaacttgggcta
ccaagagccaagaacagtatccattcctaagactccatgcagaagtgaga
gtggactaaacttgacaaaagcatttgatgagaatcatatcttgctagtt
tcgctaaggatctcggagtgaaactttgattttgtaaggtactgtattag
atagattgctgtgaccgtgaccaaaaaccaaagtaccatatttgtaggta
acattccctgaattctgttaggttttatcacgttcaatggcgatttaaga
taaatgggaaagggcaataccatagaacaagagtattcctcacactctgt
cagtacaagcttgctgaaggatagttcccagcaccttgagggtgtgggca
cacacagatcacagtttcattctgaactatctttttgggaatgcttgtgc
agtgagtaagtactcttaaaaaatctggatagctttgtttttcagaacag
aaagctggtttgttaatagcccagcctaataaactctctctgaaacaaag
gccggacaattttcttatagcccaataagataagttgcatactcttactc
ctgagatgacatggctaaggtaccaccctactctgtttgtggtattcaca
atgcttcctttcattactttcatgtggcatgatgacctactgtacaaagc
acgctcatgcttgcctgctgttcttggagcaaggatgtcttgtctccagc
cccaggctgtgtctttgctcagaaagctggtgccctgaattgcttgcttt
cacacagggtgaaaacctcagatctctcctagaccttgatagggaggacg
ctgagcaagagtttccaagctgcggcaaactcatcatagaggcagtgcct
ctaagacatttgggagggtatccaatggtaatccacgttaaaaaacaaag
ttcaaagggactggggcctttggtgaatcatgtgccttgtgaggcaacac
atggttccccagcccccatttctgcttctgtctaccatggaggtggaggc
agtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_19098292_19098758
seq2: B6Ng01-227E23.b_47_513

seq1  GAATTCCATCTATTTGAAAATCTACAGTGCACGCAATCCTCATTCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTATTTGAAAATCTACAGTGCACGCAATCCTCATTCATATT  50

seq1  ATATATTGTATTCTACAAGTGAGACTCTCGGCTCTGTAAAGTATGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTATTCTACAAGTGAGACTCTCGGCTCTGTAAAGTATGGTCTA  100

seq1  ACAAATATGCTAATAGTAAGTTTTTGGTAGACCAGACCATTGTTGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGCTAATAGTAAGTTTTTGGTAGACCAGACCATTGTTGTTCTA  150

seq1  TAAAGCCAGCTGCTTCTCAGTAAGACAGTCCACATCGCTATTGCCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGCTGCTTCTCAGTAAGACAGTCCACATCGCTATTGCCAAATC  200

seq1  TCATGGGTATTTTCTCATTTCTCTACATTGTTTTAAAGACCATTCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTATTTTCTCATTTCTCTACATTGTTTTAAAGACCATTCTTCTG  250

seq1  TTCAGAAGAAATATTGGCTGAGAAATAGATATAATTTTTAAAAAGTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGAAATATTGGCTGAGAAATAGATATAATTTTTAAAAAGTCCAC  300

seq1  CAGGTGGTGGCATTGGCAGAAGACTTAAAGGAAAAGAAAGAACATGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGGCATTGGCAGAAGACTTAAAGGAAAAGAAAGAACATGAATA  350

seq1  GCAGGCATTCTTGGTAATGGAACATAAAGAAATCAATTTGGAAATAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATTCTTGGTAATGGAACATAAAGAAATCAATTTGGAAATAGGTT  400

seq1  GGGACTTTTTCCCTCCTGGACAGTTTTTTGTTGTTGTTGGTTTGGTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTTTCCCTCCTGGACAGTTTTTTGTTGTTGTTGGTTTGGTTTGG  450

seq1  GTTTTGTTGTTGTTGTT  467
      |||||||||||||||||
seq2  GTTTTGTTGTTGTTGTT  467

seq1: chr10_19217911_19219007
seq2: B6Ng01-227E23.g_69_1174 (reverse)

seq1  GAGACTGC--TCACCT-CATGGTAGACAGGAAGCAGAAAT-GGGGCTGGG  46
      ||||||||   ||||| ||||||||||| ||||||||||| |||||||||
seq2  GAGACTGCCTCCACCTCCATGGTAGACA-GAAGCAGAAATGGGGGCTGGG  49

seq1  G-ACCATGTGTTGCCTTCACAA-GCACATGATTCAC--AAAGCCCCAGTT  92
      | ||||||||||||| |||||| |||||||||||||  || |||||||| 
seq2  GAACCATGTGTTGCC-TCACAAGGCACATGATTCACCAAAGGCCCCAGTC  98

seq1  CCTTTGAACTTTG-TTTTTAACGTGGATTACCATTGGATACC--TCCAAA  139
      ||||||||||||| ||||||||||||||||||||||||||||   |||||
seq2  CCTTTGAACTTTGTTTTTTAACGTGGATTACCATTGGATACCCTCCCAAA  148

seq1  TGTCTTAGAGGCACTGCCTCTATGATGAGTTTGCCGCAGCTTGGAAACTC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAGGCACTGCCTCTATGATGAGTTTGCCGCAGCTTGGAAACTC  198

seq1  TTGCTCAGCGTCCTCCCTATCAAGGTCTAGGAGAGATCTGAGGTTTTCAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCGTCCTCCCTATCAAGGTCTAGGAGAGATCTGAGGTTTTCAC  248

seq1  CCTGTGTGAAAGCAAGCAATTCAGGGCACCAGCTTTCTGAGCAAAGACAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAAAGCAAGCAATTCAGGGCACCAGCTTTCTGAGCAAAGACAC  298

seq1  AGCCTGGGGCTGGAGACAAGACATCCTTGCTCCAAGAACAGCAGGCAAGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGCTGGAGACAAGACATCCTTGCTCCAAGAACAGCAGGCAAGC  348

seq1  ATGAGCGTGCTTTGTACAGTAGGTCATCATGCCACATGAAAGTAATGAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGTGCTTTGTACAGTAGGTCATCATGCCACATGAAAGTAATGAAA  398

seq1  GGAAGCATTGTGAATACCACAAACAGAGTAGGGTGGTACCTTAGCCATGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTGTGAATACCACAAACAGAGTAGGGTGGTACCTTAGCCATGT  448

seq1  CATCTCAGGAGTAAGAGTATGCAACTTATCTTATTGGGCTATAAGAAAAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGGAGTAAGAGTATGCAACTTATCTTATTGGGCTATAAGAAAAT  498

seq1  TGTCCGGCCTTTGTTTCAGAGAGAGTTTATTAGGCTGGGCTATTAACAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGGCCTTTGTTTCAGAGAGAGTTTATTAGGCTGGGCTATTAACAAA  548

seq1  CCAGCTTTCTGTTCTGAAAAACAAAGCTATCCAGATTTTTTAAGAGTACT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCTGTTCTGAAAAACAAAGCTATCCAGATTTTTTAAGAGTACT  598

seq1  TACTCACTGCACAAGCATTCCCAAAAAGATAGTTCAGAATGAAACTGTGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTGCACAAGCATTCCCAAAAAGATAGTTCAGAATGAAACTGTGA  648

seq1  TCTGTGTGTGCCCACACCCTCAAGGTGCTGGGAACTATCCTTCAGCAAGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGCCCACACCCTCAAGGTGCTGGGAACTATCCTTCAGCAAGC  698

seq1  TTGTACTGACAGAGTGTGAGGAATACTCTTGTTCTATGGTATTGCCCTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGACAGAGTGTGAGGAATACTCTTGTTCTATGGTATTGCCCTTT  748

seq1  CCCATTTATCTTAAATCGCCATTGAACGTGATAAAACCTAACAGAATTCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTATCTTAAATCGCCATTGAACGTGATAAAACCTAACAGAATTCA  798

seq1  GGGAATGTTACCTACAAATATGGTACTTTGGTTTTTGGTCACGGTCACAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTTACCTACAAATATGGTACTTTGGTTTTTGGTCACGGTCACAG  848

seq1  CAATCTATCTAATACAGTACCTTACAAAATCAAAGTTTCACTCCGAGATC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATCTAATACAGTACCTTACAAAATCAAAGTTTCACTCCGAGATC  898

seq1  CTTAGCGAAACTAGCAAGATATGATTCTCATCAAATGCTTTTGTCAAGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGAAACTAGCAAGATATGATTCTCATCAAATGCTTTTGTCAAGTT  948

seq1  TAGTCCACTCTCACTTCTGCATGGAGTCTTAGGAATGGATACTGTTCTTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCACTCTCACTTCTGCATGGAGTCTTAGGAATGGATACTGTTCTTG  998

seq1  GCTCTTGGTAGCCCAAGTTTAACAAATGGGATTTGTTAGGAAATTCAACC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGTAGCCCAAGTTTAACAAATGGGATTTGTTAGGAAATTCAACC  1048

seq1  CAGAATGGATGACTTCCAAGCCCACATTAGCACCAATACATTTTACAGAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGATGACTTCCAAGCCCACATTAGCACCAATACATTTTACAGAC  1098

seq1  ATGAATTC  1097
      ||||||||
seq2  ATGAATTC  1106