BAC Information

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BAC

Clone NameB6Ng01-227L20
ChromosomeY (Build37)10 (Build37)
Map Location 1,982,507 - 1,982,56799,427,825 - 99,428,993
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L20.bB6Ng01-227L20.g
ACCGA041331GA041332
length1,0261,157
definitionB6Ng01-227L20.b B6Ng01-227L20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,982,507 - 1,982,567)(99,427,825 - 99,428,993)
sequence
gaattctcaactccttctccagtaccatgcctgcctggacactgccatgc
tcctgtcttgatgataatggattgtacctctgaacttgcagcccagccca
gcaatggaaaccctaaataacacacaacacacacacacacacacacacac
acacacacacacacacacacacacacacacacacacacacaacctggttc
agactcgtgtcattcttgtgcttgctgctcagtctctgtgttcttaggtc
cttattctcctgatggcctccatctactctggctctttcactctttctgc
ctcttcttctgctgggttccttaagctctgagtttgagcgatttaatgga
ggcatattattcagagctgtctgttccaaagacatcttctctctctacgt
aatgtctggctgtgcctttctgtatctgtttctgtctgctgtaggagaaa
gcttctcttctgatgactgagtaaggcttagatcttagtgtagctgaaaa
tcattaggggtaattatattattactttttaaaagatccgtagtgtttgg
ttgtacctcgggtctctagactatctgatctctggttcttggtcacctta
ccagtatgagttttattgcatggagtgggactttagtgaaatcagacatt
ggttggctactccaaagatcaaaggctttgtgcctcggttagtgcttatg
tttttctattggtagcctgcagagtaacttcctgcaacagataatagaac
ttaggaatgaagcctccatgtaggcaccagcttgacttatccatgttcat
taaattgtgtgtggggattgttctcaacaatgcggcccactgtcagcttt
ccaagaacagcctcttgtgttggcaacatctggattgtttagggattcca
atgggacccccttagccaacaactaaagtgaatgcaatccagtgccggta
ttggaagttccatttggtgacagaggtggccagttcggactctgtatccc
tcattatagccgacctcattaaaatg
gaattcagtttttctatattgagaagtgtagagtagactggtcaatttgg
gtcagaagaccctgtggaggcagatctccataaggcatattaagatgtgc
gtctaagtctataaacagaccttagcttgggtttagatcttatgtatcag
tctgtctgtgagtagctttgaaggcaaagaaggtaaaatttctgactcta
ttatttctatgaagaagtaacaaaaatggttagatttaaatacatataaa
acagtgccttttgtatcaccatgaccacaatatctgtcaggaagtattta
aaggaagagaaatttaatttggctcatggactcggggttttcagcctatc
atggcaggaaaggcaaggagctcagcccatggtaataggagattgtggca
aatgggagaggctcatatcattatatcatagtggagcaaaacgcagatag
catggcaggggccaggggtcagatatcaccttcaaaatcctgtctctctt
ttgactctaattcctgtaggttccacagtctttcaaaaatagtaccatta
actagagagccagtactcagaaacctgagcctctaaggacacatctaaag
tatacatcaggctctatagatgtttgattaccttactacaatgcatctat
gtgaagtttggagtttggcaaattttaataactacaggtctgtctaaata
gggagagagtatttctataatccaatcacattgccttgaagtctttgcac
ccaataattctctgcttagtcccaggactttatttaggtgaccaatctct
gacttatgctctagtaaggagaactcatttttgactcagaatcccgtgat
atggaaacacatacacaattcattactgtctggcttctttcactcagtgt
aacatttctgaggtttgtgacggtaattacaaggatcagtgatgtttccc
tttgtatactgaataatactctacatcaagtatagtccatgattatcatc
tgtgatgggtatttcaatcattgcagttcaagcactagacctttgttaac
agtcttgtgcattttttcattttcctcttgtacctattaggaggtgaatg
ccataaagtgtttagcctatgagaggagacgaactaatttttcacgatgg
ggtagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1982507_1982567
seq2: B6Ng01-227L20.b_157_223 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50

seq1  TGT------TTTAGGGT  61
      |||      ||||||||
seq2  TGTGTGTTATTTAGGGT  67

seq1: chr10_99427825_99428993
seq2: B6Ng01-227L20.g_66_1222 (reverse)

seq1  GACTA-CCCAT-GTGAAAAA-TAGTTTGTCTCTTTCTCATA-GCTAAACA  46
      ||||| ||||| |||||||| ||||| |||||  ||||||| ||||||||
seq2  GACTACCCCATCGTGAAAAATTAGTTCGTCTC-CTCTCATAGGCTAAACA  49

seq1  CTTTAT-GCATTCA-CTCTTATATAGTTACCAAAGAGAAATGAAAAAAAT  94
      |||||| ||||||| ||| || |||| ||| | ||  ||||| |||||||
seq2  CTTTATGGCATTCACCTCCTA-ATAGGTACAAGAGGAAAATG-AAAAAAT  97

seq1  GCACAAAGACTTGTAAACAAAAGGTTCTAGTGCTTTGGAAATTGCAAATG  144
      |||| ||||| ||| ||||||  | ||||||||||    || ||| ||||
seq2  GCAC-AAGAC-TGTTAACAAA--GGTCTAGTGCTT---GAACTGC-AATG  139

seq1  ATTGAAATACCCATCAACAGATGAATTAAATCATGGACTATACTTGATGT  194
      ||||||||||||||| ||||||||    ||||||||||||||||||||||
seq2  ATTGAAATACCCATC-ACAGATGA---TAATCATGGACTATACTTGATGT  185

seq1  AGAGTATTATTCAGTAATACAAAAGGAAAAACATCACTGATCCTTGTAAT  244
      ||||||||||||||| ||||||| ||  ||||||||||||||||||||||
seq2  AGAGTATTATTCAGT-ATACAAAGGG--AAACATCACTGATCCTTGTAAT  232

seq1  TACCGTCACAAACCTCAGAAATGTTACACTGAGTGAAAGAAGCCAGACAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTCACAAACCTCAGAAATGTTACACTGAGTGAAAGAAGCCAGACAG  282

seq1  TAATGAATTGTGTATGTGTTTCCATATCACGGGATTCTGAGTCAAAAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTGTGTATGTGTTTCCATATCACGGGATTCTGAGTCAAAAATG  332

seq1  AGTTCTCCTTACTAGAGCATAAGTCAGAGATTGGTCACCTAAATAAAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCTTACTAGAGCATAAGTCAGAGATTGGTCACCTAAATAAAGTC  382

seq1  CTGGGACTAAGCAGAGAATTATTGGGTGCAAAGACTTCAAGGCAATGTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTAAGCAGAGAATTATTGGGTGCAAAGACTTCAAGGCAATGTGA  432

seq1  TTGGATTATAGAAATACTCTCTCCCTATTTAGACAGACCTGTAGTTATTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTATAGAAATACTCTCTCCCTATTTAGACAGACCTGTAGTTATTA  482

seq1  AAATTTGCCAAACTCCAAACTTCACATAGATGCATTGTAGTAAGGTAATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCAAACTCCAAACTTCACATAGATGCATTGTAGTAAGGTAATC  532

seq1  AAACATCTATAGAGCCTGATGTATACTTTAGATGTGTCCTTAGAGGCTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTATAGAGCCTGATGTATACTTTAGATGTGTCCTTAGAGGCTCA  582

seq1  GGTTTCTGAGTACTGGCTCTCTAGTTAATGGTACTATTTTTGAAAGACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGAGTACTGGCTCTCTAGTTAATGGTACTATTTTTGAAAGACTG  632

seq1  TGGAACCTACAGGAATTAGAGTCAAAAGAGAGACAGGATTTTGAAGGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTACAGGAATTAGAGTCAAAAGAGAGACAGGATTTTGAAGGTGA  682

seq1  TATCTGACCCCTGGCCCCTGCCATGCTATCTGCGTTTTGCTCCACTATGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCCCTGGCCCCTGCCATGCTATCTGCGTTTTGCTCCACTATGA  732

seq1  TATAATGATATGAGCCTCTCCCATTTGCCACAATCTCCTATTACCATGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGATATGAGCCTCTCCCATTTGCCACAATCTCCTATTACCATGGG  782

seq1  CTGAGCTCCTTGCCTTTCCTGCCATGATAGGCTGAAAACCCCGAGTCCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCCTTGCCTTTCCTGCCATGATAGGCTGAAAACCCCGAGTCCAT  832

seq1  GAGCCAAATTAAATTTCTCTTCCTTTAAATACTTCCTGACAGATATTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAATTAAATTTCTCTTCCTTTAAATACTTCCTGACAGATATTGTG  882

seq1  GTCATGGTGATACAAAAGGCACTGTTTTATATGTATTTAAATCTAACCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGATACAAAAGGCACTGTTTTATATGTATTTAAATCTAACCAT  932

seq1  TTTTGTTACTTCTTCATAGAAATAATAGAGTCAGAAATTTTACCTTCTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTACTTCTTCATAGAAATAATAGAGTCAGAAATTTTACCTTCTTT  982

seq1  GCCTTCAAAGCTACTCACAGACAGACTGATACATAAGATCTAAACCCAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAGCTACTCACAGACAGACTGATACATAAGATCTAAACCCAAG  1032

seq1  CTAAGGTCTGTTTATAGACTTAGACGCACATCTTAATATGCCTTATGGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCTGTTTATAGACTTAGACGCACATCTTAATATGCCTTATGGAG  1082

seq1  ATCTGCCTCCACAGGGTCTTCTGACCCAAATTGACCAGTCTACTCTACAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCCACAGGGTCTTCTGACCCAAATTGACCAGTCTACTCTACAC  1132

seq1  TTCTCAATATAGAAAAACTGAATTC  1169
      |||||||||||||||||||||||||
seq2  TTCTCAATATAGAAAAACTGAATTC  1157