BAC Information

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BAC

Clone NameB6Ng01-227P17
Chromosome10 (Build37)
Map Location 31,040,814 - 31,160,184
singlet/doubletdoublet
Overlap geneHddc2, Tpd52l1, LOC100041294
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448
Downstream geneIbrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227P17.bB6Ng01-227P17.g
ACCGA041512GA041513
length9611,153
definitionB6Ng01-227P17.b B6Ng01-227P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,159,225 - 31,160,184)(31,040,814 - 31,041,997)
sequence
gaattcaagtcatgagacttgctggcaagtacctttatccattagtcaat
gatctagttccccaatgagtgaggatttgctttgtaaacaactgtgccat
tttattatagagtaatttcttccttccctgctaaataacaaaaggcttct
atatgattagattacattaggagaaatttaactttttattcaaaaatttc
atttcatttcaggcaataaaattgtaagtttagatcaatggaatttaact
gttaaattttgtaaataaatttatttatttactgttgggggatgcatata
ttgtacagtatgcctgtggaggtcagaagacaatctctgggaattggtac
tcctactatgtagattctagacatccaactcagtttaccaggcctggtag
caagtacttttactgctaaaccatctcatatatgtatatggtcatattgc
atattcttgttgaaattcaagaacatgataatacagatcctgtagacaga
tgcaacccatcttaaattgttctccataacatttacttagtttcttaata
ttctgaataaacagacttacaaatttcttccaaaaaacccctataaacag
agagtccattttggcagataagctaaacattctatagcagctaatgataa
taagcatttcagaaaatattgatttggttatgagaagcttgaccagatcc
tgtctaatagagatgcgaatgctcgcagccaaccatcagactgagcacag
ggaccccaatggaggagttagggataggactgaggagctgcaggggcctt
atctggcatcaatgggagtggaggcccttggtcctgtgaaggcttgatgc
cccagtgtagaggaatgctagggcagtgaggtgggggcaggtgggttagg
gtgggagacacccctcatagaatcagggccagggctgtatggcagagggg
tttgcaaaggg

gaattctgagtgcatgggagaaaactccaagaaaaaagacaagagtcttg
tgacctcagtttttccaaaacacgaaattgtttttggaatgtgtttcatg
ctcctcccaggtgtagagaataggaatgaatttacttcagataattcatc
acaactggctattgttgtttatttatatgcctttatttaaaaacaaaaca
aaacatgtttttgctacataaggcttgtccgtgtgattgtatacagcttg
aagtcatgagaactttgctcaggtgtcatcttaagccccagagtataaat
tgtctgatgctctgaataaagttggctattgtttgacacttcagatctac
ctcacttacgggctctattctcccaggccccaccacttctaaagtggaga
tagtacgtaattctttttttttttatgtttttagcctctaaaccttagag
gttacaggaaggtaacctaatgtttttattttgtagcttatatatttttg
tgtttccccctcgcctcctctttggttgcagttcttacaggaaaagtaag
gaaactgattgattttgttgacagcaggaacggcctttcgccagcttcat
cccaacacacccagtcagactgctcacttctaggcctgtgcactcctgaa
cagttcagtgttcgagacttctctgtggttggttcttcacaatggctcct
agagcatcgttccctaatgtcttgcatttgactcagtctcttggtaaatt
ttttttttgttgttgttcataaaattaactctctctggatataaaatatc
tagctcatagtttcttttccttgagtatattaagtccatttttctttttc
ttctaacatatagcattgctgtcaaagtctggctgtcaatttattctcac
tatatgccagattctattcttatataggagtacaaagaatttcttttctg
tctgttaattttcattagaatgtatctttgtatgatcattctgagtattt
cctggggtatttatctgtgctttagtatatttaaggaaaaaatgtactgc
agaatttatgacatctagctttgttttcttcttaattattaattcactct
gcatgctttgttcttgcaagcgtcatgttccagtttctggaaaccttgta
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31159225_31160184
seq2: B6Ng01-227P17.b_45_1005 (reverse)

seq1  CCCTCTGCAAACCCCCTCTCCCATACAGCCCTTACCCTGCTTCTATGAGG  50
      |||| |||||| ||||||| ||||||||||||  ||||| ||||||||||
seq2  CCCTTTGCAAA-CCCCTCTGCCATACAGCCCTGGCCCTGATTCTATGAGG  49

seq1  GTGCTCTCCCACC--TACCCACCTGCCCCCACCTCACTGCCCTAGCATTC  98
      |   |||||||||   ||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCCCACCCTAACCCACCTGCCCCCACCTCACTGCCCTAGCATTC  99

seq1  CTCTACACTGGGGCATCAAGCCTTCACAGGACCAAGGGCCTCCACTCCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACTGGGGCATCAAGCCTTCACAGGACCAAGGGCCTCCACTCCCA  149

seq1  TTGATGCCAGATAAGGCCCCTGCAGCTCCTCAGTCCTATCCCTAACTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCAGATAAGGCCCCTGCAGCTCCTCAGTCCTATCCCTAACTCCT  199

seq1  CCATTGGGGTCCCTGTGCTCAGTCTGATGGTTGGCTGCGAGCATTCGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGGGTCCCTGTGCTCAGTCTGATGGTTGGCTGCGAGCATTCGCAT  249

seq1  CTCTATTAGACAGGATCTGGTCAAGCTTCTCATAACCAAATCAATATTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTAGACAGGATCTGGTCAAGCTTCTCATAACCAAATCAATATTTT  299

seq1  CTGAAATGCTTATTATCATTAGCTGCTATAGAATGTTTAGCTTATCTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCTTATTATCATTAGCTGCTATAGAATGTTTAGCTTATCTGCC  349

seq1  AAAATGGACTCTCTGTTTATAGGGGTTTTTTGGAAGAAATTTGTAAGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTCTCTGTTTATAGGGGTTTTTTGGAAGAAATTTGTAAGTCT  399

seq1  GTTTATTCAGAATATTAAGAAACTAAGTAAATGTTATGGAGAACAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCAGAATATTAAGAAACTAAGTAAATGTTATGGAGAACAATTTA  449

seq1  AGATGGGTTGCATCTGTCTACAGGATCTGTATTATCATGTTCTTGAATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTTGCATCTGTCTACAGGATCTGTATTATCATGTTCTTGAATTT  499

seq1  CAACAAGAATATGCAATATGACCATATACATATATGAGATGGTTTAGCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAATATGCAATATGACCATATACATATATGAGATGGTTTAGCAG  549

seq1  TAAAAGTACTTGCTACCAGGCCTGGTAAACTGAGTTGGATGTCTAGAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACTTGCTACCAGGCCTGGTAAACTGAGTTGGATGTCTAGAATC  599

seq1  TACATAGTAGGAGTACCAATTCCCAGAGATTGTCTTCTGACCTCCACAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTAGGAGTACCAATTCCCAGAGATTGTCTTCTGACCTCCACAGG  649

seq1  CATACTGTACAATATATGCATCCCCCAACAGTAAATAAATAAATTTATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTACAATATATGCATCCCCCAACAGTAAATAAATAAATTTATTT  699

seq1  ACAAAATTTAACAGTTAAATTCCATTGATCTAAACTTACAATTTTATTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTAACAGTTAAATTCCATTGATCTAAACTTACAATTTTATTGC  749

seq1  CTGAAATGAAATGAAATTTTTGAATAAAAAGTTAAATTTCTCCTAATGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGAAATGAAATTTTTGAATAAAAAGTTAAATTTCTCCTAATGTA  799

seq1  ATCTAATCATATAGAAGCCTTTTGTTATTTAGCAGGGAAGGAAGAAATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCATATAGAAGCCTTTTGTTATTTAGCAGGGAAGGAAGAAATTA  849

seq1  CTCTATAATAAAATGGCACAGTTGTTTACAAAGCAAATCCTCACTCATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAATAAAATGGCACAGTTGTTTACAAAGCAAATCCTCACTCATTG  899

seq1  GGGAACTAGATCATTGACTAATGGATAAAGGTACTTGCCAGCAAGTCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTAGATCATTGACTAATGGATAAAGGTACTTGCCAGCAAGTCTCA  949

seq1  TGACTTGAATTC  960
      ||||||||||||
seq2  TGACTTGAATTC  961


seq1: chr10_31040814_31041997
seq2: B6Ng01-227P17.g_66_1218

seq1  GAATTCTGAGTGCATGGGAGAAAACTCCAAGAAAAAAGACAAGAGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGCATGGGAGAAAACTCCAAGAAAAAAGACAAGAGTCTTG  50

seq1  TGACCTCAGTTTTTCCAAAACACGAAATTGTTTTTGGAATGTGTTTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCAGTTTTTCCAAAACACGAAATTGTTTTTGGAATGTGTTTCATG  100

seq1  CTCCTCCCAGGTGTAGAGAATAGGAATGAATTTACTTCAGATAATTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCAGGTGTAGAGAATAGGAATGAATTTACTTCAGATAATTCATC  150

seq1  ACAACTGGCTATTGTTGTTTATTTATATGCCTTTATTTAAAAACAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGCTATTGTTGTTTATTTATATGCCTTTATTTAAAAACAAAACA  200

seq1  AAACATGTTTTTGCTACATAAGGCTTGTCCGTGTGATTGTATACAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTTTGCTACATAAGGCTTGTCCGTGTGATTGTATACAGCTTG  250

seq1  AAGTCATGAGAACTTTGCTCAGGTGTCATCTTAAGCCCCAGAGTATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGAGAACTTTGCTCAGGTGTCATCTTAAGCCCCAGAGTATAAAT  300

seq1  TGTCTGATGCTCTGAATAAAGTTGGCTATTGTTTGACACTTCAGATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATGCTCTGAATAAAGTTGGCTATTGTTTGACACTTCAGATCTAC  350

seq1  CTCACTTACGGGCTCTATTCTCCCAGGCCCCACCACTTCTAAAGTGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTACGGGCTCTATTCTCCCAGGCCCCACCACTTCTAAAGTGGAGA  400

seq1  TAGTACGTAATTCTTTTTTTTTTTATGTTTTTAGCCTCTAAACCTTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGTAATTCTTTTTTTTTTTATGTTTTTAGCCTCTAAACCTTAGAG  450

seq1  GTTACAGGAAGGTAACCTAATGTTTTTATTTTGTAGCTTATATATTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGAAGGTAACCTAATGTTTTTATTTTGTAGCTTATATATTTTTG  500

seq1  TGTTTCCCCCTCGCCTCCTCTTTGGTTGCAGTTCTTACAGGAAAAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCCCTCGCCTCCTCTTTGGTTGCAGTTCTTACAGGAAAAGTAAG  550

seq1  GAAACTGATTGATTTTGTTGACAGCAGGAACGGCCTTTCGCCAGCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGATTGATTTTGTTGACAGCAGGAACGGCCTTTCGCCAGCTTCAT  600

seq1  CCCAACACACCCAGTCAGACTGCTCACTTCTAGGCCTGTGCACTCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACCCAGTCAGACTGCTCACTTCTAGGCCTGTGCACTCCTGAA  650

seq1  CAGTTCAGTGTTCGAGACTTCTCTGTGGTTGGTTCTTCACAATGGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTGTTCGAGACTTCTCTGTGGTTGGTTCTTCACAATGGCTCCT  700

seq1  AGAGCATCGTTCCCTAATGTCTTGCATTTGACTCAGTCTCTTGGTAAA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAGCATCGTTCCCTAATGTCTTGCATTTGACTCAGTCTCTTGGTAAATT  750

seq1  TTTTTTTTGTTGTTGTTCATAAAATTAACTCTCTCTGGATATAAAATATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTGTTGTTCATAAAATTAACTCTCTCTGGATATAAAATATC  800

seq1  TAGCTCATAGTTTCTTTTCCTTGAGTATATTAAGTCCATTTTTCTTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATAGTTTCTTTTCCTTGAGTATATTAAGTCCATTTTTCTTTTTC  850

seq1  TTCTAACATATAGCATTGCTGTCAAAGTCTGGCTGTCAATTTATTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATATAGCATTGCTGTCAAAGTCTGGCTGTCAATTTATTCTCAC  900

seq1  TATATGCCAGATTCTATTCTTATATAGGAGTACAAAGAATTTCTTTTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCAGATTCTATTCTTATATAGGAGTACAAAGAATTTCTTTTCTG  950

seq1  TCTGTTAATTTTCATTAGAATGTATCTTTGTATTGATCATTCTGAGTTAA  999
      |||||||||||||||||||||||||||||||| ||||||||||||||  |
seq2  TCTGTTAATTTTCATTAGAATGTATCTTTGTA-TGATCATTCTGAGT--A  997

seq1  TTTCCTTGGGTATTTAATCTGTGCTTTTAGTATATTTTAGGGAAAAAAAT  1049
      |||||| |||||||| |||||||| |||||||||||| |||  |||||||
seq2  TTTCCTGGGGTATTT-ATCTGTGC-TTTAGTATATTTAAGG--AAAAAAT  1043

seq1  GTAACTGCAAGGAAATTTTATTGACATCTAGCTTTTGTTTTTCTTTCTTT  1099
      || ||||||  |||  |||| ||||||||||| ||||||||   ||||| 
seq2  GT-ACTGCA--GAA--TTTA-TGACATCTAGC-TTTGTTTT--CTTCTTA  1084

seq1  ATTTATTTTATTCTACTCTTGCATGCTTTTGTTCTTTTTTGCTAGCTGTC  1149
      |||   || |||| |||| ||||||| |||||||    |||| ||| |||
seq2  ATT--ATTAATTC-ACTC-TGCATGC-TTTGTTC----TTGCAAGC-GTC  1124

seq1  AGTGTTTTCCAGTTTCTTGGAAACCCTTTGTATCT  1184
      |   | |||||||||| ||||||||  ||||||||
seq2  A---TGTTCCAGTTTC-TGGAAACC--TTGTATCT  1153


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