BAC Information

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BAC

Clone NameB6Ng01-229A10
ChromosomeX (Build37)10 (Build37)
Map Location 117,495,235 - 117,495,39589,569,910 - 89,570,674
singlet/doubletsingletsinglet
Overlap genePcdh11x
Upstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229A10.bB6Ng01-229A10.g
ACCGA042284GA042285
length505766
definitionB6Ng01-229A10.b B6Ng01-229A10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,495,235 - 117,495,395)(89,569,910 - 89,570,674)
sequence
gaattcagctgggtcaatttgtcaagctgatttctatactaaacccaagt
atcaaagacaatgagggggggtcatatatctatgcagattaacttgtgtt
ccatttagaaaaggaaatgaaacaaaaacaaaactgtagaggaattttaa
tccagcaacatagctgctctggcaagtgattacatccaaaaaactacatc
tatgtgatctgccacacacctttaatccctcacgtacctttgaggtaaag
ttagtttgtagaaggaagcaacaatgtttgaaagtgatgtctaactattg
catatgccagcaagattttggtgacaggaccctgatatagctgtcttttg
tgaggctatgccagtgcctggcaaatatagaagtggatgctcacagtcat
ttattgcatggaacacagagcccccaatggaggagctagagaatgtaccc
aagaaactaaagggatctgcaaccctataggaggaacaacaatatgaact
aacca

gaattcaaacacagcactctgtatatctagaaagcacaacaaactcctca
catattaaaaccaatatgctttccaaacagatgttatacgttgtaaaatt
gctgaaaaccaaagttggcaagaaagttcgagttataatacatgcttatt
ttgataaacattagatgtacattagaggagaatgtgtcttctttaattta
tgaaaagagtactgaagaaattatagaagatataattaatattatgataa
ggcttagaataaataataattagagaaataatagccagaattttcccaag
tctgatgacaattaagccaaagatccatgacgatgaataaactttaatca
ggaaaaaaaaagtaaaacaccaccgattatgtcacagtcaaaatttaaaa
agtgctgagatcacgaaaataatgcaaacgatatgagaataatactgagg
gtatttaaaatacctatggaaggtggcactgaactatggctgtagggact
gattttgagaggcacaatgtttatttttataaagactagattcctacaaa
taggttgttaatgtaaaggctccagctacaaagactaaggggaaaatgac
agccatgataaagaagactcgtgttgtcttagagaatcaatgactgttga
atatgaatgtcaaaggaagtgccataggggaagtgaagagtctttgtctt
ttttgttttttttttgtttgtttgtttgttttgtttgtgttttgtagtgg
gagaatgtgttagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117495235_117495395
seq2: B6Ng01-229A10.b_342_553 (reverse)

seq1  TGGTTAGTTCATATTGTT--------------------------------  18
      ||||||||||||||||||                                
seq2  TGGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGATCCCTTTAGT  50

seq1  -------------------GCTCCTTCATTTTGGGCGCTCTGTTCCATCC  49
                         |||||| ||||  |||| || |||||||| |
seq2  TTCTTGGGTACATTCTCTAGCTCCTCCATTGGGGGCTCTGTGTTCCATGC  100

seq1  AATAGATGATTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAG  99
      |||| |||| ||||||||||||||||| ||||||||||||||||||||||
seq2  AATAAATGACTGTGAGCATCCACTTCTATATTTGCCAGGCACTGGCATAG  150

seq1  CCTCACAAGAGAGAGCTATATCAGGGTCTTTTCAGCAAAATCTTCCTGGC  149
      |||||||| ||| ||||||||||||||| | ||| ||||||||| |||||
seq2  CCTCACAAAAGACAGCTATATCAGGGTCCTGTCACCAAAATCTTGCTGGC  200

seq1  ATATGCAATAGT  161
      ||||||||||||
seq2  ATATGCAATAGT  212


seq1: chr10_89569910_89570674
seq2: B6Ng01-229A10.g_67_832

seq1  GAATTCAAACACAGCACTCTGTATATCTAGAAAGCACAACAAACTCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACAGCACTCTGTATATCTAGAAAGCACAACAAACTCCTCA  50

seq1  CATATTAAAACCAATATGCTTTCCAAACAGATGTTATACGTTGTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAACCAATATGCTTTCCAAACAGATGTTATACGTTGTAAAATT  100

seq1  GCTGAAAACCAAAGTTGGCAAGAAAGTTCGAGTTATAATACATGCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAACCAAAGTTGGCAAGAAAGTTCGAGTTATAATACATGCTTATT  150

seq1  TTGATAAACATTAGATGTACATTAGAGGAGAATGTGTCTTCTTTAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAACATTAGATGTACATTAGAGGAGAATGTGTCTTCTTTAATTTA  200

seq1  TGAAAAGAGTACTGAAGAAATTATAGAAGATATAATTAATATTATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGTACTGAAGAAATTATAGAAGATATAATTAATATTATGATAA  250

seq1  GGCTTAGAATAAATAATAATTAGAGAAATAATAGCCAGAATTTTCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAATAAATAATAATTAGAGAAATAATAGCCAGAATTTTCCCAAG  300

seq1  TCTGATGACAATTAAGCCAAAGATCCATGACGATGAATAAACTTTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACAATTAAGCCAAAGATCCATGACGATGAATAAACTTTAATCA  350

seq1  GGAAAAAAAAAGTAAAACACCACCGATTATGTCACAGTCAAAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAGTAAAACACCACCGATTATGTCACAGTCAAAATTTAAAA  400

seq1  AGTGCTGAGATCACGAAAATAATGCAAACGATATGAGAATAATACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGATCACGAAAATAATGCAAACGATATGAGAATAATACTGAGG  450

seq1  GTATTTAAAATACCTATGGAAGGTGGCACTGAACTATGGCTGTAGGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAATACCTATGGAAGGTGGCACTGAACTATGGCTGTAGGGACT  500

seq1  GATTTTGAGAGGCACAATGTTTATTTTTATAAAGACTAGATTCCTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAGAGGCACAATGTTTATTTTTATAAAGACTAGATTCCTACAAA  550

seq1  TAGGTTGTTAATGTAAAGGCTCCAGCTACAAAGACTAAGGGGAAAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTTAATGTAAAGGCTCCAGCTACAAAGACTAAGGGGAAAATGAC  600

seq1  AGCCATGATAAAGAAGACTCGTGTTGTCTTAGAGAATCAATGACTGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGATAAAGAAGACTCGTGTTGTCTTAGAGAATCAATGACTGTTGA  650

seq1  ATATGAATGTCAAAGGAAGTGCCATAGGGGAAGTGAAGAGTCTTTGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTCAAAGGAAGTGCCATAGGGGAAGTGAAGAGTCTTTGTCTT  700

seq1  TTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTTGTTTGTGTTTTGTAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTTGTTTGTGTTTTGTAGTGG  750

seq1  GAGAATGTG-TAGTGT  765
      ||||||||| ||||||
seq2  GAGAATGTGTTAGTGT  766


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