BAC Information

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BAC

Clone NameB6Ng01-229P01
Chromosome10 (Build37)X (Build37)
Map Location 103,904,236 - 103,905,367117,495,301 - 117,495,456
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P01.bB6Ng01-229P01.g
ACCGA042935GA042936
length1,114514
definitionB6Ng01-229P01.b B6Ng01-229P01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,904,236 - 103,905,367)(117,495,301 - 117,495,456)
sequence
gaattcacatatctaacacagaaaataaaatcttaagaaaagaaattatg
gtaaaatggagtaaaagttagaaaaaacagcctcatatggtcttttataa
ctcattcatccttttgcctatattctatccttccttacgacttaatgtct
ttatgaagtgggctgtacatcaaatgacaacaggaggtatcactttacta
acaaaagaagccatgaaatttctttctacataatcattgtcatcaatttt
aatatcaatgtaaattggttttaaattaccagattgttaattgaaatagc
ttctaaactcattgattcagaattaaaatatgaatctgaatggtaaggaa
atatgacaaataataacaataataataaagtaaagcaaaaggtttctatt
tctatgttatccaaagaaaagtgggttacctttgtttaatctctaaagac
aggttatgacatagtgtatgcttacagccttgttctttgttgccaatctc
catctgaaaatctggcatcccaaacctgcttttctaaacctttaattcct
ctcatttctttccaggatcctgtgctctgggattctagttcagctcagcc
aatagaaatatgagttcatgtgacatgaccaacacataatctttgtcact
tttccagtattccagcttacattaggcagacaccaagataattttaatct
ctgttggatgaggtcatgattttgtcacatgatttatctctcttgtttga
acaaatatggaggtcaacatgacctctaaaacttctgtggcttcatgaaa
ctgtgtgcagctttaaattcttccattatttatgaaactacttcattata
ttgagccacctagaacagacctttaaaaaaaagagaaacttttttaatgc
agtaacatgagatatgcagatatttactgtagttctcacaagttggattg
gaatcttcagtagctcacacacactgatgtttcagagcaaccatgaagca
gtgacagcagcatgtgtggtcagctactctcttgtgtcgcttttggtttc
ttataggaaacaaaattcataggtaattgaatttcatatatttttgggat
attccccaacattg
gaattcactgatcagcaacattagtgtcagtatagattctgaaaaagata
ccagctcacaactggtacattgggagacacatttagacaatgtactgtca
tgttgtatgtgcaattccagcaccaatgccaatctccatagaggaatttt
agtccaagaacatggctgctctggccagcgattgtatgcaaagacctaaa
tctatagatctggccagaatgcagacacttcctggatcacagtactttct
agctggaatacaaacacaccttcagtacacaggtttaatccctaaaaagg
acaataaggttattttgtagagggaagcagccatattttggaactaagat
gaaagaatggaccatctaggactaccccaccctgggatccatcccataat
cagccaccaaacgcagacactattgcatatgtcagcaagattttgctgac
aggaccctgatatagctgtctcttgtgaggctatgccagtgcctggcaaa
tatagaagttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103904236_103905367
seq2: B6Ng01-229P01.b_41_1154

seq1  GAATTCACATATCTAACACAGAAAATAAAATCTTAAGAAAAGAAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATCTAACACAGAAAATAAAATCTTAAGAAAAGAAATTATG  50

seq1  GTAAAATGGAGTAAAAGTTAGAAAAAACAGCCTCATATGGTCTTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGAGTAAAAGTTAGAAAAAACAGCCTCATATGGTCTTTTATAA  100

seq1  CTCATTCATCCTTTTGCCTATATTCTATCCTTCCTTACGACTTAATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATCCTTTTGCCTATATTCTATCCTTCCTTACGACTTAATGTCT  150

seq1  TTATGAAGTGGGCTGTACATCAAATGACAACAGGAGGTATCACTTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTGGGCTGTACATCAAATGACAACAGGAGGTATCACTTTACTA  200

seq1  ACAAAAGAAGCCATGAAATTTCTTTCTACATAATCATTGTCATCAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAGCCATGAAATTTCTTTCTACATAATCATTGTCATCAATTTT  250

seq1  AATATCAATGTAAATTGGTTTTAAATTACCAGATTGTTAATTGAAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATGTAAATTGGTTTTAAATTACCAGATTGTTAATTGAAATAGC  300

seq1  TTCTAAACTCATTGATTCAGAATTAAAATATGAATCTGAATGGTAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTCATTGATTCAGAATTAAAATATGAATCTGAATGGTAAGGAA  350

seq1  ATATGACAAATAATAACAATAATAATAAAGTAAAGCAAAAGGTTTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAAATAATAACAATAATAATAAAGTAAAGCAAAAGGTTTCTATT  400

seq1  TCTATGTTATCCAAAGAAAAGTGGGTTACCTTTGTTTAATCTCTAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTATCCAAAGAAAAGTGGGTTACCTTTGTTTAATCTCTAAAGAC  450

seq1  AGGTTATGACATAGTGTATGCTTACAGCCTTGTTCTTTGTTGCCAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGACATAGTGTATGCTTACAGCCTTGTTCTTTGTTGCCAATCTC  500

seq1  CATCTGAAAATCTGGCATCCCAAACCTGCTTTTCTAAACCTTTAATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAATCTGGCATCCCAAACCTGCTTTTCTAAACCTTTAATTCCT  550

seq1  CTCATTTCTTTCCAGGATCCTGTGCTCTGGGATTCTAGTTCAGCTCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTTTCCAGGATCCTGTGCTCTGGGATTCTAGTTCAGCTCAGCC  600

seq1  AATAGAAATATGAGTTCATGTGACATGACCAACACATAATCTTTGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATATGAGTTCATGTGACATGACCAACACATAATCTTTGTCACT  650

seq1  TTTCCAGTATTCCAGCTTACATTAGGCAGACACCAAGATAATTTTAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTATTCCAGCTTACATTAGGCAGACACCAAGATAATTTTAATCT  700

seq1  CTGTTGGATGAGGTCATGATTTTGTCACATGATTTATCTCTCTTGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATGAGGTCATGATTTTGTCACATGATTTATCTCTCTTGTTTGA  750

seq1  ACAAATATGGAGGTCAACATGACCTCTAAAACTTCTGTGGCTTCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGGAGGTCAACATGACCTCTAAAACTTCTGTGGCTTCATGAAA  800

seq1  CTGTGTGCAGCTTTAAATTCTTCCATTATTTATGAAACTACTTCATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAGCTTTAAATTCTTCCATTATTTATGAAACTACTTCATTATA  850

seq1  TTGAGCCACCTAGAACAGACCTTTAAAAAAAAGAGAAACTTTTTTAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCACCTAGAACAGACCTTTAAAAAAAAGAGAAACTTTTTTAATGC  900

seq1  AGTAAACATGAGATATGCAGATAATTTACTGTAGTTCTCACAAGTTGGAT  950
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGT-AACATGAGATATGCAGAT-ATTTACTGTAGTTCTCACAAGTTGGAT  948

seq1  TGGAATCTTCAAGTAGGCTCACACACCACTGATGTTTCCAGAAGCAAACC  1000
      |||||||||| |||| ||||||||| ||||||||||| ||| ||| ||||
seq2  TGGAATCTTC-AGTA-GCTCACACA-CACTGATGTTT-CAG-AGC-AACC  992

seq1  ATGAAGCCAGTGACAGGCAGCATGTTGTTGGGTCAGCCTTACTCTC-TGT  1049
      |||||| |||||||| |||||||| |||  |||||||  ||||||| |||
seq2  ATGAAG-CAGTGACA-GCAGCATG-TGT--GGTCAGC--TACTCTCTTGT  1035

seq1  GTCGCTTTTGGTTTTCTTATAGGAAACAAAAATTCATAGGGAAATTTGAA  1099
      ||||||||||| ||||||||||||||| |||||||||||| ||  |||||
seq2  GTCGCTTTTGG-TTTCTTATAGGAAAC-AAAATTCATAGGTAA--TTGAA  1081

seq1  TTTTCATATATTTTT-GGATATTCCACAACATTG  1132
       |||||||||||||| ||||||||| ||||||||
seq2  -TTTCATATATTTTTGGGATATTCCCCAACATTG  1114

seq1: chrX_117495301_117495456
seq2: B6Ng01-229P01.g_422_577 (reverse)

seq1  ATCC-ACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGAGAGC  49
      |||| |||||| |||||||||||||||||||||||||||||||||| |||
seq2  ATCCAACTTCTATATTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGC  50

seq1  TATATCAGGGTCTTTTCAGCAAAATCTTCCTGGCATATGCAATAGTGTCT  99
      |||||||||||| | ||||||||||||| ||| |||||||||||||||||
seq2  TATATCAGGGTCCTGTCAGCAAAATCTTGCTGACATATGCAATAGTGTCT  100

seq1  GCGTTTGCTGGCTGATTATGAGAAGGATACCTGGGTGGGGCAGTCTCTGG  149
      ||||||| |||||||||||| || |||| || |||||||| |||| || |
seq2  GCGTTTGGTGGCTGATTATGGGATGGATCCCAGGGTGGGGTAGTC-CTAG  149

seq1  ATGGTCC  156
      |||||||
seq2  ATGGTCC  156