BAC Information

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BAC

Clone NameB6Ng01-230A13
Chromosome10 (Build37)
Map Location 43,739,379 - 43,871,893
singlet/doubletdoublet
Overlap genenone
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A13.bB6Ng01-230A13.g
ACCGA043006GA043007
length7651,045
definitionB6Ng01-230A13.b B6Ng01-230A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,871,132 - 43,871,893)(43,739,379 - 43,740,419)
sequence
gaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagag
agagagagagagagagagagagagagagagagagtagctcttaggcatca
tttccttccttctacactgagtcctgagagtatactcaggtcaccaggtg
tgtataacaagatactttacttgctgagccattttgccaactttgttcct
tctttaaaaacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacaca
tgtgtgtgagggtatgcttatggaagcagagtttttgaaacagggtctct
gagtggagcaaacacatccctgacccattctcaagtccccatttcctttt
ctttatgggccccatcttctgactttctgcagaatactctaaggtggcct
tagtcgactcaacttagattttcttccaactctgagccgttcagggaagc
cttctttgtaagaaccaagcttgttcacatcacgtctctgcctaagaata
taactaggtcctgtgctatttgtctttccgccagtctgacacagacctaa
tacaatcagcttacagagaggtggggcttgttctggtccacttccattga
agtcatggtgtatgttcagttggccccctgctcttggggctggtgctatg
ccgcccagggtgatggcagaggaagaccactcgggctcatgctataaaac
aaaatagaaagacagagcagggccctaggattctctccttcgtggatgcg
cctatgatggccggg
gaattccactaaatgccaaacacttttaaaggtcacagtcatgacgctcc
taaagctacaagtttaatatgttttgaaactggcaagtcgtttcaaaagc
catcatctgcccaaggctgccacaggtgtgtttcaaacaatatatggctc
tgctactctctcttgcacatgcgtgtgtgtgggggggtgcgcacacacac
acacacacacacacacacacacgtgcgcgcgctagcagggaaggaggagg
cagaggatagactcagaccccagggcaactcagtggagacctgagagcct
cacaggaaccaccgagctggtttgagctctttggatacagcatttaaatt
gatcagatgtggtaaaactatccttgtaaggagtttcatacaccatctaa
tatgtttttctggtccctggatctgctggttctgccctcacgtccctccc
actggcagggagacagctttactttgcttcctcctcccaaagaacacgca
ggcattattattattattattattgttattattattattattattattat
tattatcctccacgaagctaccttggcccaggtgggatgatgcaggcaaa
cttcagaggctgggagcacgtgtgcttttgggagtgaggagtctgtgaga
attgtgctgctcctttaagtgtgagagtataagatgtttcatcaccatat
tcctggcaggcagcataagcttagatgccttttctgcctcggcttgtgag
tctggattgcttcttttgcaaagcctgctcctgtacaggcttgaggcaga
caagcctgaacacccaggctcccctgcacagtgctgctcctgattctgcc
ctagagacatggggcagaaggctctgcccgcttcaacattcaaatttaaa
tccaaatgtcattcttactagccatatgttcctggttacctatagtgtcg
ggggctaatatgatggactttctcctggatatatctttaatagcacagat
tattaagacagaagcagcattcaaaatgctagcctgggctggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43871132_43871893
seq2: B6Ng01-230A13.b_30_794 (reverse)

seq1  CCCGGCCATCATAGGCGCATCCACGAAGGAGAGAATCCTA-GGCCCTGCT  49
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCGGCCATCATAGGCGCATCCACGAAGGAGAGAATCCTAGGGCCCTGCT  50

seq1  CTGTCTTTCTCTTTTGTTTTATAGCATGAG-CCGAGTGGTCTTCCTCTGC  98
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CTGTCTTTCTATTTTGTTTTATAGCATGAGCCCGAGTGGTCTTCCTCTGC  100

seq1  CATCACCCTGGGCGGCCTAGCACCAGCCCCAAGAGCAGGGGGCCAACTGA  148
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCACCCTGGGCGGCATAGCACCAGCCCCAAGAGCAGGGGGCCAACTGA  150

seq1  ACATACACCATGACTTCAATGG-AGTGGACCAGAACAAGCCCCACCTCTC  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACATACACCATGACTTCAATGGAAGTGGACCAGAACAAGCCCCACCTCTC  200

seq1  TGTAAGCTGATTGTATTAGGTCTGTGTCAGACTGGCGGAAAGACAAATAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTGATTGTATTAGGTCTGTGTCAGACTGGCGGAAAGACAAATAG  250

seq1  CACAGGACCTAGTTATATTCTTAGGCAGAGACGTGATGTGAACAAGCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACCTAGTTATATTCTTAGGCAGAGACGTGATGTGAACAAGCTTG  300

seq1  GTTCTTACAAAGAAGGCTTCCCTGAACGGCTCAGAGTTGGAAGAAAATCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACAAAGAAGGCTTCCCTGAACGGCTCAGAGTTGGAAGAAAATCT  350

seq1  AAGTTGAGTCGACTAAGGCCACCTTAGAGTATTCTGCAGAAAGTCAGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGTCGACTAAGGCCACCTTAGAGTATTCTGCAGAAAGTCAGAAG  400

seq1  ATGGGGCCCATAAAGAAAAGGAAATGGGGACTTGAGAATGGGTCAGGGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCCATAAAGAAAAGGAAATGGGGACTTGAGAATGGGTCAGGGAT  450

seq1  GTGTTTGCTCCACTCAGAGACCCTGTTTCAAAAACTCTGCTTCCATAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTCCACTCAGAGACCCTGTTTCAAAAACTCTGCTTCCATAAGC  500

seq1  ATACCCTCACACACATGTGTGTATACACACACACACACACACACACACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCACACACATGTGTGTATACACACACACACACACACACACACAC  550

seq1  ACATGTTTTTAAAGAAGGAACAAAGTTGGCAAAATGGCTCAGCAAGTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTTTAAAGAAGGAACAAAGTTGGCAAAATGGCTCAGCAAGTAAA  600

seq1  GTATCTTGTTATACACACCTGGTGACCTGAGTATACTCTCAGGACTCAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTTATACACACCTGGTGACCTGAGTATACTCTCAGGACTCAGT  650

seq1  GTAGAAGGAAGGAAATGATGCCTAAGAGCTACTCTCTCTCTCTCTCTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGAAGGAAATGATGCCTAAGAGCTACTCTCTCTCTCTCTCTCTC  700

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC  750

seq1  ACACACACAGAATTC  762
      |||||||||||||||
seq2  ACACACACAGAATTC  765

seq1: chr10_43739379_43740419
seq2: B6Ng01-230A13.g_67_1111

seq1  GAATTCCACTAAATGCCAAACACTTTTAAAGGTCACAGTCATGACGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAAATGCCAAACACTTTTAAAGGTCACAGTCATGACGCTCC  50

seq1  TAAAGCTACAAGTTTAATATGTTTTGAAACTGGCAAGTCGTTTCAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACAAGTTTAATATGTTTTGAAACTGGCAAGTCGTTTCAAAAGC  100

seq1  CATCATCTGCCCAAGGCTGCCACAGGTGTGTTTCAAACAATATATGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTGCCCAAGGCTGCCACAGGTGTGTTTCAAACAATATATGGCTC  150

seq1  TGCTACTCTCTCTTGCACATGCGTGTGTGTGGGGGGGTGCGCACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCTCTCTTGCACATGCGTGTGTGTGGGGGGGTGCGCACACACAC  200

seq1  ACACACACACACACACACACACGTGCGCGCGCTAGCAGGGAAGGAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACGTGCGCGCGCTAGCAGGGAAGGAGGAGG  250

seq1  CAGAGGATAGACTCAGACCCCAGGGCAACTCAGTGGAGACCTGAGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATAGACTCAGACCCCAGGGCAACTCAGTGGAGACCTGAGAGCCT  300

seq1  CACAGGAACCACCGAGCTGGTTTGAGCTCTTTGGATACAGCATTTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAACCACCGAGCTGGTTTGAGCTCTTTGGATACAGCATTTAAATT  350

seq1  GATCAGATGTGGTAAAACTATCCTTGTAAGGAGTTTCATACACCATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATGTGGTAAAACTATCCTTGTAAGGAGTTTCATACACCATCTAA  400

seq1  TATGTTTTTCTGGTCCCTGGATCTGCTGGTTCTGCCCTCACGTCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTCTGGTCCCTGGATCTGCTGGTTCTGCCCTCACGTCCCTCCC  450

seq1  ACTGGCAGGGAGACAGCTTTACTTTGCTTCCTCCTCCCAAAGAACACGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGGGAGACAGCTTTACTTTGCTTCCTCCTCCCAAAGAACACGCA  500

seq1  GGCATTATTATTATTATTATTATTGTTATTATTATTATTATTATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTATTATTATTATTATTATTGTTATTATTATTATTATTATTATTAT  550

seq1  TATTATCCTCCACGAAGCTACCTTGGCCCAGGTGGGATGATGCAGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTCCACGAAGCTACCTTGGCCCAGGTGGGATGATGCAGGCAAA  600

seq1  CTTCAGAGGCTGGGAGCACGTGTGC-TTTGGGAGTGAGGAGTCTGTGAGA  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCAGAGGCTGGGAGCACGTGTGCTTTTGGGAGTGAGGAGTCTGTGAGA  650

seq1  ATTGTGCTGCTCCTTTAAGTGTGAGAGTATAAGATGTTTCATCACCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTGCTCCTTTAAGTGTGAGAGTATAAGATGTTTCATCACCATAT  700

seq1  TCCTGGCAGGCAGCATAAGCTTAGATGCCTTTTCTGCCTCGGCTTGTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGGCAGCATAAGCTTAGATGCCTTTTCTGCCTCGGCTTGTGAG  750

seq1  TCTGGATTGCTTCTTTTGCAAAGCCTGCTCCTGTACAGGCTTGAGGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGCTTCTTTTGCAAAGCCTGCTCCTGTACAGGCTTGAGGCAGA  800

seq1  CAAGCCTGAACACCCAGGCTCCCCTGCACAGTGCTGCTCCTGATTCTG-C  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGCCTGAACACCCAGGCTCCCCTGCACAGTGCTGCTCCTGATTCTGCC  850

seq1  CTAGAGACAT-GGGCAGAAGGCTCTGCCCGCTTCAACATTTCAAATTAAA  897
      |||||||||| ||||||||||||||||||||||||||| |||||||| ||
seq2  CTAGAGACATGGGGCAGAAGGCTCTGCCCGCTTCAACA-TTCAAATTTAA  899

seq1  ATCCAAATGTCATCCTAACTAGCCATATGTTCCT-GTTACCTATAGTGTC  946
      ||||||||||||| || ||||||||||||||||| |||||||||||||||
seq2  ATCCAAATGTCATTCTTACTAGCCATATGTTCCTGGTTACCTATAGTGTC  949

seq1  -GGTGCTAATATGATGGACCTTCTCCTGGATATATCTTTAATAGCACAGA  995
       || ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGGGCTAATATGATGGACTTTCTCCTGGATATATCTTTAATAGCACAGA  999

seq1  TATTTAAGACAGAAACAGCGTTCAGAATGCTCAGCCT-GGCTGGTTT  1041
      |  ||||||||||| |||| |||| |||||| ||||| |||||||||
seq2  TTATTAAGACAGAAGCAGCATTCAAAATGCT-AGCCTGGGCTGGTTT  1045