BAC Information

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BAC

Clone NameB6Ng01-231D12
Chromosome10 (Build37)
Map Location 36,454,234 - 36,455,355
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231D12.bB6Ng01-231D12.g
ACCGA043877GA043878
length1,2471,115
definitionB6Ng01-231D12.b B6Ng01-231D12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctattggtggtct
ttttgtcttattgacggtgtcctttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttaaagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatgggttgattggt
gttcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggctcatttctgggtcttcaattctattccattgg
tctacttgtctgtcagtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtacttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaatgtactggcta
gttttgtgtcaactttgacacagctggagttaccacagagaaaggagctt
tagtttgaggaaatgcctccatgagatccaactgttaaggcatttttttc
aattagttgaccaagggggaaaggcccctttgtggggtgggaccatctct
gggctgggtagtcttaaggttctataagaagagcaagcttgagcaagcca
gatgaggcaagccagttaaagaaattatcccttcatggcctctgcatcag
cttcttgcttcctggacttgccttgagttccagtcctggctttcgtggtg
atgtaacagcgagtatggaagtgtttaagccggaaatacccttttcttct
caactgtttttctcttggttcatgatgtttgtggctagtaatagtaatcc
tgcatctagtaacaaatttgtgatttacacagccagaagaaatgact

gaattcagaagcaaaggagagaaaggtgagagtagtgtgtgctgtacgaa
gttaaggaaagtggcttttctgggctggagaggtggctcacatctcttcc
agaggaccccagttcaattctcagcatccacatgatggctcacaacagca
tagtcccagttctagatgatgccgtgtcctcttctagcttttgttcctag
gtatgcatataacacatatgcacaagcagacaaaacccttacacataaaa
taaatataaataaatctttaaaaagaaaataaatcaacttttataattat
aagaaaataaaaaggtatactttttatctcttgacaatttttaatatata
aatatacatgtaaccatattaagcttaaagaaatgttttgaaagtatgaa
gcacaaagaaaaatgattttaagcaaactgtatggcatttacgtgaccat
taaaagattaaaggagacaatttgagatctaaattaaaaaaatacttttt
tttttttaaagtggagtgaagggaggcctgggtggttaagtgctcaaaca
tgaggacctgtgtttgatctttgtatgtgggaaagcctggactacaggat
gggctgggttccatgctgagaagactgagatgggtggtctctagggtatg
gtgggcagggagatcagataaatcctaatcaagctgagctataggctagt
gatacatgtacatatgtacatgtcacaaatacactcaaacacatatgaac
tcacatataaatgctcacatacacaaatacaattgaacatacatgcactt
ctgtatatacatacatacacacacatgcacccctcttctgacatttatac
ttgaacatacacagacacatagacacacggatacatagacacacagatac
atagacacacagatacagagacacatagatacatagacacaaacacacac
acacacacacacacacaccacacacacacacataccactcctggattaca
ccccaacatgaacatacacagttcttcagaaacctcactttgaaagctca
tgtttaatttaaggttgtcaggcctcaatgatcatcagaatatgtttgaa
attccgtttcctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36454234_36455355
seq2: B6Ng01-231D12.g_68_1182 (reverse)

seq1  AGCAGGAAA-AGAAAATCAACCATA-TCTGATGATCATTTGAGGCCTGGA  48
      |||||||||  |||  |||| |||| ||||||||||| ||||||||| ||
seq2  AGCAGGAAACGGAATTTCAAACATATTCTGATGATCA-TTGAGGCCT-GA  48

seq1  CAAACTTAAAATTAAACATGAGCTTTTCAAAAGTGAGGTTCCTGAAAGAA  98
      ||| ||| ||||||||||||||||||   ||||||||||| ||| |||||
seq2  CAACCTT-AAATTAAACATGAGCTTT--CAAAGTGAGGTTTCTG-AAGAA  94

seq1  CTGTGTATGTTCATGTTGGGGGTGTAATCCAGGTGTGTGTATGTGTGTGT  148
      ||||||||||||||||| ||||||||||||||| ||| ||||||||||||
seq2  CTGTGTATGTTCATGTT-GGGGTGTAATCCAGGAGTG-GTATGTGTGTGT  142

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTCTATGTATCTAT  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTG-GTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTCTATGTATCTAT  191

seq1  GTGTCTCTGTATCTGTGTGTCTATGTATCTGTGTGTCTATGTATCCGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGTATCTGTGTGTCTATGTATCTGTGTGTCTATGTATCCGTGT  241

seq1  GTCTATGTGTCTGTGTATGTTCAAGTATAAATGTCAGAAGAGGGGTGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTGTCTGTGTATGTTCAAGTATAAATGTCAGAAGAGGGGTGCAT  291

seq1  GTGTGTGTATGTATGTATATACAGAAGTGCATGTATGTTCAATTGTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTATGTATATACAGAAGTGCATGTATGTTCAATTGTATTT  341

seq1  GTGTATGTGAGCATTTATATGTGAGTTCATATGTGTTTGAGTGTATTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGAGCATTTATATGTGAGTTCATATGTGTTTGAGTGTATTTGT  391

seq1  GACATGTACATATGTACATGTATCACTAGCCTATAGCTCAGCTTGATTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTACATATGTACATGTATCACTAGCCTATAGCTCAGCTTGATTAG  441

seq1  GATTTATCTGATCTCCCTGCCCACCATACCCTAGAGACCACCCATCTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCTGATCTCCCTGCCCACCATACCCTAGAGACCACCCATCTCAG  491

seq1  TCTTCTCAGCATGGAACCCAGCCCATCCTGTAGTCCAGGCTTTCCCACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGCATGGAACCCAGCCCATCCTGTAGTCCAGGCTTTCCCACAT  541

seq1  ACAAAGATCAAACACAGGTCCTCATGTTTGAGCACTTAACCACCCAGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATCAAACACAGGTCCTCATGTTTGAGCACTTAACCACCCAGGCC  591

seq1  TCCCTTCACTCCACTTTAAAAAAAAAAAAGTATTTTTTTAATTTAGATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACTCCACTTTAAAAAAAAAAAAGTATTTTTTTAATTTAGATCT  641

seq1  CAAATTGTCTCCTTTAATCTTTTAATGGTCACGTAAATGCCATACAGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTCTCCTTTAATCTTTTAATGGTCACGTAAATGCCATACAGTTT  691

seq1  GCTTAAAATCATTTTTCTTTGTGCTTCATACTTTCAAAACATTTCTTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATCATTTTTCTTTGTGCTTCATACTTTCAAAACATTTCTTTAA  741

seq1  GCTTAATATGGTTACATGTATATTTATATATTAAAAATTGTCAAGAGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATATGGTTACATGTATATTTATATATTAAAAATTGTCAAGAGATA  791

seq1  AAAAGTATACCTTTTTATTTTCTTATAATTATAAAAGTTGATTTATTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATACCTTTTTATTTTCTTATAATTATAAAAGTTGATTTATTTTC  841

seq1  TTTTTAAAGATTTATTTATATTTATTTTATGTGTAAGGGTTTTGTCTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTTATTTATATTTATTTTATGTGTAAGGGTTTTGTCTGCT  891

seq1  TGTGCATATGTGTTATATGCATACCTAGGAACAAAAGCTAGAAGAGGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATGTGTTATATGCATACCTAGGAACAAAAGCTAGAAGAGGACA  941

seq1  CGGCATCATCTAGAACTGGGACTATGCTGTTGTGAGCCATCATGTGGATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCATCTAGAACTGGGACTATGCTGTTGTGAGCCATCATGTGGATG  991

seq1  CTGAGAATTGAACTGGGGTCCTCTGGAAGAGATGTGAGCCACCTCTCCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTGAACTGGGGTCCTCTGGAAGAGATGTGAGCCACCTCTCCAG  1041

seq1  CCCAGAAAAGCCACTTTCCTTAACTTCGTACAGCACACACTACTCTCACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAAGCCACTTTCCTTAACTTCGTACAGCACACACTACTCTCACC  1091

seq1  TTTCTCTCCTTTGCTTCTGAATTC  1122
      ||||||||||||||||||||||||
seq2  TTTCTCTCCTTTGCTTCTGAATTC  1115


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