BAC Information

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BAC

Clone NameB6Ng01-231N12
Chromosome10 (Build37)
Map Location 109,537,614 - 109,698,827
singlet/doubletdoublet
Overlap geneLOC100042502, LOC100042506
Upstream geneNav3, LOC100042497
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231N12.bB6Ng01-231N12.g
ACCGA044333GA044334
length1,063958
definitionB6Ng01-231N12.b B6Ng01-231N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,537,614 - 109,538,666)(109,697,864 - 109,698,827)
sequence
gaattcaatatactattaaaagtttatagatcaaagaagaaatcacagaa
gatgctagagaatgttgtcaacccaatgacagcgtgaacacaacacaaat
ttttgtgggcacagttcaaatagttcttcaggtatatttatatattcaag
tgtctgtattagaaaaaaaatgaaacaagttttaacttgtttctaacata
aagaactaggaaatgaagaaaagtaattaaaaaaaactttataaaagtaa
acaaagtaattcatttttgcatatccattatattattaatacagaactct
aatatttactggcattgaggaagagggaggaggagattttgtggccactt
gtcacaagctaggatcatatgggaagagataatttcacttgagaaaatgc
cccattagattggcttgtaggcaagtctgcaggggattttcttgactgac
tattgatacaggaaatcccagcttactgtatgtggcatcaccccagggcc
tgagttgaagaagaaaactgggcaagcaagtcatgaggagcaaatcagga
aacagaactagctcttccatggcacctacatccactcccacctctagatt
cctgtcttcagttcctgcccagacttcctcccatgaaggtctaaaaactg
caagccaaaataaatcctctccccttcaagtgttgttttgccacagcaat
ggaaatcacaactaagacgcctattactgaaagatcatggtagatgctac
agggaacagttttcatactctgtcactgtgtttttgcaacttttgatcac
aagttattctttgcaaagtaaagtctgcgaaagaacacaaagcagaaaaa
tctaattagctttacataagagtgaaattaaattttcactcaacatttta
gcagaggaaaatagaagttctagttggatgggtttcatggaaaattctta
gggaagattcttaatcttatacaaagaaacagaaaatgataaggagggga
atctcttgcttttttttaaaaaaaaggatatgttacttctataccaagct
cctatatgcaaaa

gaattctccctgaaccatttccttataacgctttaaaaggatgaactgtt
agagtatgtgaattgtgaattatgcatcaagaagtcgttactgagcacaa
aaacacgacacaaagtgagcccaggtggagttacttgattggagggaagc
actgctgatcttgatttttcaagagtgagtttgattttctggcatttgaa
ttatttggcctgtgctggctgcaagctttttgggtgctgtgtgtggaaga
ttcagatttttcttcttgttcaggagtgataacccaaagaagaaaatgaa
aagtactatttaatgagtggccggttatggtttaagcatttaagtgcttg
tgtgttagaagagacagtcaaagcactagtatgaattttcattacattaa
aaaccctcttctgtacagagccaccaacctctgctcatgcaattgccaga
gacagagcgacccttctgtaattttagtttaaattcctgtagcttttcaa
cagagaggccacagtgtatgaatttgagatgagtagagagcagttcactt
tacgttaagaaaaagtttattcatctaggttaactatctttcaaagctct
ggtttctagtaattcttttgctatttattcacttaaatgcagcaatagta
agaatcctgaaaatttttttctatttatttaaagatgaaaatagtcttta
agtagtaaagaatctttgcaaaccaggatatgtttcaatctgtgtttttc
ttaggaaacctcaaaggtaatttcattttggaatcaaactgtaacactgt
agtgttttacttggcgaattagcattgctgtatattcaatacaaatatga
tcataaatctatgttttgagaagtttgcgttttaatctcatacccttctc
cctttagggaaattgcatgtattttttcttagtatcaatataaacaatga
aacaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109537614_109538666
seq2: B6Ng01-231N12.b_45_1107

seq1  GAATTCAATATACTATTAAAAGTTTATAGATCAAAGAAGAAATCACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATACTATTAAAAGTTTATAGATCAAAGAAGAAATCACAGAA  50

seq1  GATGCTAGAGAATGTTGTCAACCCAATGACAGCGTGAACACAACACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGAGAATGTTGTCAACCCAATGACAGCGTGAACACAACACAAAT  100

seq1  TTTTGTGGGCACAGTTCAAATAGTTCTTCAGGTATATTTATATATTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGCACAGTTCAAATAGTTCTTCAGGTATATTTATATATTCAAG  150

seq1  TGTCTGTATTAGAAAAAAAATGAAACAAGTTTTAACTTGTTTCTAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATTAGAAAAAAAATGAAACAAGTTTTAACTTGTTTCTAACATA  200

seq1  AAGAACTAGGAAATGAAGAAAAGTAATTAAAAAAAACTTTATAAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAGGAAATGAAGAAAAGTAATTAAAAAAAACTTTATAAAAGTAA  250

seq1  ACAAAGTAATTCATTTTTGCATATCCATTATATTATTAATACAGAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAATTCATTTTTGCATATCCATTATATTATTAATACAGAACTCT  300

seq1  AATATTTACTGGCATTGAGGAAGAGGGAGGAGGAGATTTTGTGGCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACTGGCATTGAGGAAGAGGGAGGAGGAGATTTTGTGGCCACTT  350

seq1  GTCACAAGCTAGGATCATATGGGAAGAGATAATTTCACTTGAGAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGCTAGGATCATATGGGAAGAGATAATTTCACTTGAGAAAATGC  400

seq1  CCCATTAGATTGGCTTGTAGGCAAGTCTGCAGGGGATTTTCTTGACTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGATTGGCTTGTAGGCAAGTCTGCAGGGGATTTTCTTGACTGAC  450

seq1  TATTGATACAGGAAATCCCAGCTTACTGTATGTGGCATCACCCCAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATACAGGAAATCCCAGCTTACTGTATGTGGCATCACCCCAGGGCC  500

seq1  TGAGTTGAAGAAGAAAACTGGGCAAGCAAGTCATGAGGAGCAAATCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAAGAAGAAAACTGGGCAAGCAAGTCATGAGGAGCAAATCAGGA  550

seq1  AACAGAACTAGCTCTTCCATGGCACCTACATCCACTCCCACCTCTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTAGCTCTTCCATGGCACCTACATCCACTCCCACCTCTAGATT  600

seq1  CCTGTCTTCAGTTCCTGCCCAGACTTCCTCCCATGAAGGTCTAAAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCAGTTCCTGCCCAGACTTCCTCCCATGAAGGTCTAAAAACTG  650

seq1  CAAGCCAAAATAAATCCTCTCCCCTTCAAGTGTTGTTTTGCCACAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAAATAAATCCTCTCCCCTTCAAGTGTTGTTTTGCCACAGCAAT  700

seq1  GGAAATCACAACTAAGACGCCTATTACTG-AAGATCATGGTAGATGCTAC  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAAATCACAACTAAGACGCCTATTACTGAAAGATCATGGTAGATGCTAC  750

seq1  AGGGAACAGTTTTCATACTCTGTCACTGTGTTTTTGCAAC-TTTGATCAC  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGAACAGTTTTCATACTCTGTCACTGTGTTTTTGCAACTTTTGATCAC  800

seq1  AAAGTTATTCTTTGCAAAGTAAAGTCTGCGAAAGAACACAAAGCAG-AAA  847
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAGTTATTCTTTGCAAAGTAAAGTCTGCGAAAGAACACAAAGCAGAAAA  849

seq1  ATCTAATTAGCTTTACATAAGAGTGAAATTAAATTTTCACTCAACATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTAGCTTTACATAAGAGTGAAATTAAATTTTCACTCAACATTTT  899

seq1  AGCAGAGG-AAATAGAAGTTCTAGTT-GATGGGTTTCAT-GAAAATTCT-  943
      |||||||| ||||||||||||||||| |||||||||||| ||||||||| 
seq2  AGCAGAGGAAAATAGAAGTTCTAGTTGGATGGGTTTCATGGAAAATTCTT  949

seq1  -AGGAAGAATCTTAATCTTATACAAAGAAACAGAAAATGATAAGGAGGGG  992
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATTCTTAATCTTATACAAAGAAACAGAAAATGATAAGGAGGGG  999

seq1  AATCTCTTGCTTTTTTT--AAAAAAAAGATATGTTACTCTAATACCAAGC  1040
      |||||||||||||||||  ||||||| |||||||||||   |||||||||
seq2  AATCTCTTGCTTTTTTTTAAAAAAAAGGATATGTTACTTCTATACCAAGC  1049

seq1  TCC-ATATGCAAAA  1053
      ||| ||||||||||
seq2  TCCTATATGCAAAA  1063


seq1: chr10_109697864_109698827
seq2: B6Ng01-231N12.g_68_1025 (reverse)

seq1  AGCCTGTTTCATTTGTTTTATATTTTGAATACTAAGAAAAAATACATGCA  50
      |||||||||||||   ||||||||    ||||||||||||||||||||||
seq2  AGCCTGTTTCATT--GTTTATATT---GATACTAAGAAAAAATACATGCA  45

seq1  ATTTCCCTAAAGGGAGAAGGGGTATGAGAATAAAACGCAAACTTCTCAAA  100
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  ATTTCCCTAAAGGGAGAA-GGGTATGAGATTAAAACGCAAACTTCTCAAA  94

seq1  ACATAGATTTATGATCATATTTGTATTGAATATACAGCAATGCTAATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTTATGATCATATTTGTATTGAATATACAGCAATGCTAATTCG  144

seq1  CCAAGTAAAACACTACAGTGTTACAGTTTGATTCCAAAATGAAATTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAAACACTACAGTGTTACAGTTTGATTCCAAAATGAAATTACCT  194

seq1  TTGAGGTTTCCTAAGAAAAACACAGATTGAAACATATCCTGGTTTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTTCCTAAGAAAAACACAGATTGAAACATATCCTGGTTTGCAAA  244

seq1  GATTCTTTACTACTTAAAGACTATTTTCATCTTTAAATAAATAGAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTACTACTTAAAGACTATTTTCATCTTTAAATAAATAGAAAAAA  294

seq1  ATTTTCAGGATTCTTACTATTGCTGCATTTAAGTGAATAAATAGCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGGATTCTTACTATTGCTGCATTTAAGTGAATAAATAGCAAAAG  344

seq1  AATTACTAGAAACCAGAGCTTTGAAAGATAGTTAACCTAGATGAATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAGAAACCAGAGCTTTGAAAGATAGTTAACCTAGATGAATAAAC  394

seq1  TTTTTCTTAACGTAAAGTGAACTGCTCTCTACTCATCTCAAATTCATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAACGTAAAGTGAACTGCTCTCTACTCATCTCAAATTCATACA  444

seq1  CTGTGGCCTCTCTGTTGAAAAGCTACAGGAATTTAAACTAAAATTACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTCTCTGTTGAAAAGCTACAGGAATTTAAACTAAAATTACAGA  494

seq1  AGGGTCGCTCTGTCTCTGGCAATTGCATGAGCAGAGGTTGGTGGCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCGCTCTGTCTCTGGCAATTGCATGAGCAGAGGTTGGTGGCTCTGT  544

seq1  ACAGAAGAGGGTTTTTAATGTAATGAAAATTCATACTAGTGCTTTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGGGTTTTTAATGTAATGAAAATTCATACTAGTGCTTTGACTG  594

seq1  TCTCTTCTAACACACAAGCACTTAAATGCTTAAACCATAACCGGCCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTAACACACAAGCACTTAAATGCTTAAACCATAACCGGCCACTC  644

seq1  ATTAAATAGTACTTTTCATTTTCTTCTTTGGGTTATCACTCCTGAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGTACTTTTCATTTTCTTCTTTGGGTTATCACTCCTGAACAAG  694

seq1  AAGAAAAATCTGAATCTTCCACACACAGCACCCAAAAAGCTTGCAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATCTGAATCTTCCACACACAGCACCCAAAAAGCTTGCAGCCAG  744

seq1  CACAGGCCAAATAATTCAAATGCCAGAAAATCAAACTCACTCTTGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCAAATAATTCAAATGCCAGAAAATCAAACTCACTCTTGAAAAA  794

seq1  TCAAGATCAGCAGTGCTTCCCTCCAATCAAGTAACTCCACCTGGGCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCAGCAGTGCTTCCCTCCAATCAAGTAACTCCACCTGGGCTCAC  844

seq1  TTTGTGTCGTGTTTTTGTGCTCAGTAACGACTTCTTGATGCATAATTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCGTGTTTTTGTGCTCAGTAACGACTTCTTGATGCATAATTCAC  894

seq1  AATTCACATACTCTAACAGTTCATCCTTTTAAAGCGTTATAAGGAAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATACTCTAACAGTTCATCCTTTTAAAGCGTTATAAGGAAATGG  944

seq1  TTCAGGGAGAATTC  964
      ||||||||||||||
seq2  TTCAGGGAGAATTC  958


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