BAC Information

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BAC

Clone NameB6Ng01-232K22
Chromosome10 (Build37)11 (Build37)
Map Location 101,378,523 - 101,379,66954,005,035 - 54,005,116
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K22.bB6Ng01-232K22.g
ACCGA044955GA044956
length1,139161
definitionB6Ng01-232K22.b B6Ng01-232K22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,378,523 - 101,379,669)(54,005,035 - 54,005,116)
sequence
gaattccaatatacattcagagttatttttcaaatataaaggtatttata
catgtaaactgtatgctacattttggtcaaatccattgttttgttaaatg
tcagtcatttaaattatatccaaatggtgccaaagagttccaaaaagcac
ataaatcaagtatgacaagtgatgttcagcctaaggatagaataccagtt
gcagcaggaaaaatgactgatgagtgcttattcttcccaagttatgcatc
agtagatcactgaatgaaccaacagtgcttgtctgtggacatctgcaagc
cttgttcagttcacacttgtcacttgtgcttcacttgtctctaagtcacc
aggaaaactatgaatgaacaacagacaaatactctgcttatgtaaaaata
ttactacttggttgctacattattccaagcataaatcaaagtccaatacc
tgaatcagagaattaagtaatttgaccatacgtctatgtcttcagattca
tattacagaacaatagaaaatgtgataattattccacaacatttctctgt
ggtgatggttgcattgaactttatgttaatagtagtctgagatcctctcg
gggcttccttttagtaggagaatgaagctgtgcaactagaaatcagcaga
agatgactaaatatatatgtatcagtagcacatagatgcccctcttaatg
atccctttagccacagtcattcagtaatccttataaatttttattaaaca
caactcttcattgagagtgaagtaacattgtgaaaactttaacaatttct
caagatgaaactatcacaaagcaggggactgaatttccatagctatgttg
tcctttacaaagctcctgcctgtttgttccacccctgggagcaacgattt
tcagcaagtgtctgatatttaactgattcctattgctacagatgggcccc
atttgactcgtctctaaatgcagcatcacacaaataagaaaaataaaaaa
ctgtagaacgcaagaacagcttattgaagaaataggctatggcagttgac
ttacttcagagatttaaaagccctgtcaatattcctcctttcttctcctc
ctcatgggtgcataatcatatttacaaaggcagtttaaa

tttgtttagttctgagccccattttttaataggcttgtttgattttttgg
aatctacattcttgattcctttatatatatatatatagatagatagatag
atagatagatagatagatagatagatagatagatatagagatagatagaa
agaaagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_101378523_101379669
seq2: B6Ng01-232K22.b_43_1181 (reverse)

seq1  TTTATAACTGCCTTTGTAAATATGGATTATGCACATGTGA-GAGGAGAGA  49
      |||| |||||||||||||||||| ||||||||||   ||| |||||||  
seq2  TTTA-AACTGCCTTTGTAAATAT-GATTATGCACCCATGAGGAGGAGAAG  48

seq1  AAAGAGAGAAAATTATTGACAGGGCTTTTAAAATCTCTGGAATTAAGTCA  99
      |||| ||| ||  |||||||||||||||| |||||||| ||| |||||||
seq2  AAAG-GAGGAA--TATTGACAGGGCTTTT-AAATCTCT-GAAGTAAGTCA  93

seq1  ACTGCCATAGGCTTATTTCTTCAATAAGCTGT--CTGCCTTCTACCGTTT  147
      ||||||||| || |||||||||||||||||||   ||| |||||| |   
seq2  ACTGCCATA-GCCTATTTCTTCAATAAGCTGTTCTTGCGTTCTACAG---  139

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTTAGAGACGAGTCAA  197
        |||||| ||||| || ||| | |  | |||||||||||||||||||||
seq2  --TTTTTTATTTTTCTTATTTGTGTGATGCTGCATTTAGAGACGAGTCAA  187

seq1  ATGGGG-CCATCTGTAGCAAATAGGAATCAGTTAAATATCAGACACTTGC  246
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGGGCCCATCTGTAGC-AATAGGAATCAGTTAAATATCAGACACTTGC  236

seq1  TGAAAATCGTTGCT-CCAGGGGTGGAACAAACAGGCAGGAGCTTTGTAAA  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAAAATCGTTGCTCCCAGGGGTGGAACAAACAGGCAGGAGCTTTGTAAA  286

seq1  GGACAACATAGCTATGGAAATTCAGTCCCCTGCTTTGTGATAGTTTCATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACATAGCTATGGAAATTCAGTCCCCTGCTTTGTGATAGTTTCATC  336

seq1  TTGAG-AATTGTTAAAGTTTTCACAATGTTACTTCACTCTCAATGAAGAG  394
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATTGTTAAAGTTTTCACAATGTTACTTCACTCTCAATGAAGAG  386

seq1  TTGTGTTTAATAAAAATTTATAAGGATTACTGAATGACTGTGGCTAAAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAATAAAAATTTATAAGGATTACTGAATGACTGTGGCTAAAGG  436

seq1  GATCATTAAGAGGGGCATCTATGTGCTACTGATACATATATATTTAGTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAAGAGGGGCATCTATGTGCTACTGATACATATATATTTAGTCA  486

seq1  TCTTCTGCTGATTTCTAGTTGCACAGCTTCATTCTCCTACTAAAAGGAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTGATTTCTAGTTGCACAGCTTCATTCTCCTACTAAAAGGAAG  536

seq1  CCCCGAGAGGATCTCAGACTACTATTAACATAAAGTTCAATGCAACCATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGAGGATCTCAGACTACTATTAACATAAAGTTCAATGCAACCATC  586

seq1  ACCACAGAGAAATGTTGTGGAATAATTATCACATTTTCTATTGTTCTGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGAAATGTTGTGGAATAATTATCACATTTTCTATTGTTCTGTA  636

seq1  ATATGAATCTGAAGACATAGACGTATGGTCAAATTACTTAATTCTCTGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATCTGAAGACATAGACGTATGGTCAAATTACTTAATTCTCTGAT  686

seq1  TCAGGTATTGGACTTTGATTTATGCTTGGAATAATGTAGCAACCAAGTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATTGGACTTTGATTTATGCTTGGAATAATGTAGCAACCAAGTAG  736

seq1  TAATATTTTTACATAAGCAGAGTATTTGTCTGTTGTTCATTCATAGTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTTACATAAGCAGAGTATTTGTCTGTTGTTCATTCATAGTTTT  786

seq1  CCTGGTGACTTAGAGACAAGTGAAGCACAAGTGACAAGTGTGAACTGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACTTAGAGACAAGTGAAGCACAAGTGACAAGTGTGAACTGAAC  836

seq1  AAGGCTTGCAGATGTCCACAGACAAGCACTGTTGGTTCATTCAGTGATCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGCAGATGTCCACAGACAAGCACTGTTGGTTCATTCAGTGATCT  886

seq1  ACTGATGCATAACTTGGGAAGAATAAGCACTCATCAGTCATTTTTCCTGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCATAACTTGGGAAGAATAAGCACTCATCAGTCATTTTTCCTGC  936

seq1  TGCAACTGGTATTCTATCCTTAGGCTGAACATCACTTGTCATACTTGATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGGTATTCTATCCTTAGGCTGAACATCACTTGTCATACTTGATT  986

seq1  TATGTGCTTTTTGGAACTCTTTGGCACCATTTGGATATAATTTAAATGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTTTTGGAACTCTTTGGCACCATTTGGATATAATTTAAATGAC  1036

seq1  TGACATTTAACAAAACAATGGATTTGACCAAAATGTAGCATACAGTTTAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTAACAAAACAATGGATTTGACCAAAATGTAGCATACAGTTTAC  1086

seq1  ATGTATAAATACCTTTATATTTGAAAAATAACTCTGAATGTATATTGGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAATACCTTTATATTTGAAAAATAACTCTGAATGTATATTGGAA  1136

seq1  TTC  1147
      |||
seq2  TTC  1139


seq1: chr11_54005035_54005116
seq2: B6Ng01-232K22.g_146_235 (reverse)

seq1  --------TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  42
              ||| ||||||||||| | ||||||||||||||||||||||||
seq2  TCTATCTTTCTTTCTATCTATCTCTATATCTATCTATCTATCTATCTATC  50

seq1  TATCTATCTATCTATCTATCTATCTATATGTATATATATA  82
      ||||||||||||||||||||||||||||| ||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATATATATATATATA  90


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