BAC Information

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BAC

Clone NameB6Ng01-233F09
Chromosome10 (Build37)
Map Location 110,494,433 - 110,610,998
singlet/doubletdoublet
Overlap geneEG432502, LOC667904, Osbpl8
Upstream geneLOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233F09.bB6Ng01-233F09.g
ACCGA045428GA045429
length8291,109
definitionB6Ng01-233F09.b B6Ng01-233F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,494,433 - 110,495,260)(110,609,886 - 110,610,998)
sequence
gaattcacctgcctctgtctcccaagtgctgggattaaaggcgtgcacag
tgttttgcctacatgtatgtctatgcgtcatgcgcatgcactgcccacag
aggtctgaggatggtgtccaatctcctgagactggagttacagattgaga
gctgcatgtcggccctaggtattgaaccctggtcctctggaaaaatagcc
aggttctcttaaccacagagccatccctccagtccccagtttctttcttt
tttttttttaacttcaattctcagccatttctttttatcttctctaagtt
tcaaatatttcctatacattttaattgtgtgttttatctgttatattagt
tataataaaatattgaaaaggacacacttgtcaaacagccaatattttta
ctttgatgccccaactcccagctcagaacagaagtggccctttctcattt
gcctgcccggtgccctgtccgtgcttctgacaagcacattctcttgccca
cccttccctataattacgtattttatctcccctgctacactctcatatta
cctttagggaagagaatcaagtcttctttgttcttgacagtgcttaataa
aaaaatggctaatttaattttttttcctctttgttttggcttcagatgtt
tctggaaacattcgactacacagaaacagtttcccttactattgccaaaa
aatatctcctgattcaccaacaattaaaatggcaattaaaaagtgatgct
ctgtggtggttaaaaaccaggagttgtttttaacgtggagactgagagca
tgccctgaactaggcagggagggaggggg
gaattcaaggaaagtgtgggctacatgattccctgtctcagaaagaacaa
aagtgagctgaggacatggctcaataggaaagaacacttgctgagccagc
aataagaacctaaatttggatctcccgcaccctaagaagccagatggtat
ggccggtaatctcagggttgaagggccctaaaatcggaggactgagacag
gaagatcactgggggttgctagctagccagcctaacatgaaaaccagcaa
gacgttcaagactgaaaccctgtctcaagggcatatgttagagagcaata
agtcagggctcccaacactcatcttctagatgaatggacggatgggtagg
tggacacacacacacacacacacacacatacacacacctgagaatgtata
cttccacaagactataggggcaaagggaagttacattatccaattaaaga
gttctaaaatgaggactggacatgctggcccattcctagcactgaagaag
gatccgatcgctgtaaacttggggtcagctgggctaaacctgggctacag
tgagagtccgtgtctgaaaccaagcaaacaaaacagcatatcagaagaaa
gtgataggaagagacctaaaaggcaagctgtctaatctagaggctgacca
ctcagattgaaagcacaatagaatagatgggagtaaggaggcagtgtagg
gaagactagggtagagacatatactgttagaagaggggacaaggaaaaaa
ttagggaaacaggaagtcctgcccaaacgttaaaaaaattcaatagtcag
aaccttggtattatcaactgttttcttttttttaattactcggggactac
ataataaattctacagaaaaggaatcacaatctattgcatactacctgac
ccagccaataaaataatagttacatagtcatagtgtcacattacttgctt
tttatcaattatagcacttcagggacatatgccagagataggttacatag
cggaaactgtgtttaatagcaatacaagtaccatataagggaggaaaaat
tatggaaaatgaaaaacctccagtatgcttcaatttgggctcagctaact
gggtagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110494433_110495260
seq2: B6Ng01-233F09.b_49_877

seq1  GAATTCACCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCGTGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCGTGCACAG  50

seq1  TGTTTTGCCTACATGTATGTCTATGCGTCATGCGCATGCACTGCCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTACATGTATGTCTATGCGTCATGCGCATGCACTGCCCACAG  100

seq1  AGGTCTGAGGATGGTGTCCAATCTCCTGAGACTGGAGTTACAGATTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAGGATGGTGTCCAATCTCCTGAGACTGGAGTTACAGATTGAGA  150

seq1  GCTGCATGTCGGCCCTAGGTATTGAACCCTGGTCCTCTGGAAAAATAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGTCGGCCCTAGGTATTGAACCCTGGTCCTCTGGAAAAATAGCC  200

seq1  AGGTTCTCTTAACCACAGAGCCATCCCTCCAGTCCCCAGTTTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCTTAACCACAGAGCCATCCCTCCAGTCCCCAGTTTCTTTCTTT  250

seq1  TTTTTTTTTAACTTCAATTCTCAGCCATTTCTTTTTATCTTCTCTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACTTCAATTCTCAGCCATTTCTTTTTATCTTCTCTAAGTT  300

seq1  TCAAATATTTCCTATACATTTTAATTGTGTGTTTTATCTGTTATATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTCCTATACATTTTAATTGTGTGTTTTATCTGTTATATTAGT  350

seq1  TATAATAAAATATTGAAAAGGACACACTTGTCAAACAGCCAATATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAATATTGAAAAGGACACACTTGTCAAACAGCCAATATTTTTA  400

seq1  CTTTGATGCCCCAACTCCCAGCTCAGAACAGAAGTGGCCCTTTCTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGCCCCAACTCCCAGCTCAGAACAGAAGTGGCCCTTTCTCATTT  450

seq1  GCCTGCCCGGTGCCCTGTCCGTGCTTCTGACAAGCACATTCTCTTGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCGGTGCCCTGTCCGTGCTTCTGACAAGCACATTCTCTTGCCCA  500

seq1  CCCTTCCCTATAATTACGTATTTTATCTCCCCTGCTACACTCTCATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTATAATTACGTATTTTATCTCCCCTGCTACACTCTCATATTA  550

seq1  CCTTTAGGGAAGAGAATCAAGTCTTCTTTGTTCTTGACAGTGCTTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGGAAGAGAATCAAGTCTTCTTTGTTCTTGACAGTGCTTAATAA  600

seq1  AAAAATGGCTAATTTAATTTTTTTTCCTCTTTGTTTTGGCTTCAGATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTAATTTAATTTTTTTTCCTCTTTGTTTTGGCTTCAGATGTT  650

seq1  TCTGGAAACATTCGACTACACAGAAACAGTTTCCCTTACTATTGCCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACATTCGACTACACAGAAACAGTTTCCCTTACTATTGCCAAAA  700

seq1  AATATCTCCTGATTCACCAACAATTAAAATGGCAATTAAAAAGTGATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCTGATTCACCAACAATTAAAATGGCAATTAAAAAGTGATGCT  750

seq1  CTGTGGTGGTTAAAAACCAGGAGTTGTTTTTAACGTGGAGACTGAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGTTAAAAACCAGGAGTTGTTTTTAACGTGGAGACTGAGAGCA  800

seq1  TGCCCTGAACTAGGCAGGGA-GGAGGGGG  828
      |||||||||||||||||||| ||||||||
seq2  TGCCCTGAACTAGGCAGGGAGGGAGGGGG  829

seq1: chr10_110609886_110610998
seq2: B6Ng01-233F09.g_67_1175 (reverse)

seq1  AAGCTA-CCAGTTAGCTGAGCCCAAA-TGAAGACATTACT-GAAGTTTTT  47
      |||||| ||||||||||||||||||| ||||| || |||| || ||||||
seq2  AAGCTACCCAGTTAGCTGAGCCCAAATTGAAG-CA-TACTGGAGGTTTTT  48

seq1  CATTTTTTTCTAT-ATTTTTCCTCCTAATTATGGGTACTTTGTATTTCCT  96
      ||   ||||| || |||||||||||    ||| ||||| ||||| || ||
seq2  CA---TTTTCCATAATTTTTCCTCCCTTATAT-GGTAC-TTGTA-TTGCT  92

seq1  ATTTAAACACAGTTTCCGCTATGTAACCCTATCTCTGCATTATGT-CCTG  145
      | |||||||||||||||||||||||| ||||||||||   ||||| ||||
seq2  A-TTAAACACAGTTTCCGCTATGTAA-CCTATCTCTGGCATATGTCCCTG  140

seq1  AGGTTGCTTATAATTGAT-AAAAGCAAGTAATGTTGACACTATGACTATG  194
      | | ||| |||||||||| |||||||||||||| ||||||||||||||||
seq2  AAG-TGC-TATAATTGATAAAAAGCAAGTAATG-TGACACTATGACTATG  187

seq1  TAACTATTATTT--ATGGCTGGGTCAGGTAGTATGC-ATAGATTGTGATT  241
      ||||||||||||   ||||||||||||||||||||| |||||||||||||
seq2  TAACTATTATTTTATTGGCTGGGTCAGGTAGTATGCAATAGATTGTGATT  237

seq1  CCTTTTCTGTAGATTTTATTATGTAGTCCCCGAGTAATTAAAAAAAAGAA  291
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTAGAATTTATTATGTAGTCCCCGAGTAATTAAAAAAAAGAA  287

seq1  AACAGTTGATAATACCAAGGTTCTGACTATTGAATTTTTTTAACGTTTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGATAATACCAAGGTTCTGACTATTGAATTTTTTTAACGTTTGG  337

seq1  GCAGGACTTCCTGTTTCCCTAATTTTTTCCTTGTCCCCTCTTCTAACAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTTCCTGTTTCCCTAATTTTTTCCTTGTCCCCTCTTCTAACAGT  387

seq1  ATATGTCTCTACCCTAGTCTTCCCTACACTGCCTCCTTACTCCCATCTAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTCTACCCTAGTCTTCCCTACACTGCCTCCTTACTCCCATCTAT  437

seq1  TCTATTGTGCTTTCAATCTGAGTGGTCAGCCTCTAGATTAGACAGCTTGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTGCTTTCAATCTGAGTGGTCAGCCTCTAGATTAGACAGCTTGC  487

seq1  CTTTTAGGTCTCTTCCTATCACTTTCTTCTGATATGCTGTTTTGTTTGCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGTCTCTTCCTATCACTTTCTTCTGATATGCTGTTTTGTTTGCT  537

seq1  TGGTTTCAGACACGGACTCTCACTGTAGCCCAGGTTTAGCCCAGCTGACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAGACACGGACTCTCACTGTAGCCCAGGTTTAGCCCAGCTGACC  587

seq1  CCAAGTTTACAGCGATCGGATCCTTCTTCAGTGCTAGGAATGGGCCAGCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTACAGCGATCGGATCCTTCTTCAGTGCTAGGAATGGGCCAGCA  637

seq1  TGTCCAGTCCTCATTTTAGAACTCTTTAATTGGATAATGTAACTTCCCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTCCTCATTTTAGAACTCTTTAATTGGATAATGTAACTTCCCTT  687

seq1  TGCCCCTATAGTCTTGTGGAAGTATACATTCTCAGGTGTGTGTATGTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTATAGTCTTGTGGAAGTATACATTCTCAGGTGTGTGTATGTGTG  737

seq1  TGTGTGTGTGTGTGTGTGTCCACCTACCCATCCGTCCATTCATCTAGAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTCCACCTACCCATCCGTCCATTCATCTAGAAG  787

seq1  ATGAGTGTTGGGAGCCCTGACTTATTGCTCTCTAACATATGCCCTTGAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTGGGAGCCCTGACTTATTGCTCTCTAACATATGCCCTTGAGA  837

seq1  CAGGGTTTCAGTCTTGAACGTCTTGCTGGTTTTCATGTTAGGCTGGCTAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCAGTCTTGAACGTCTTGCTGGTTTTCATGTTAGGCTGGCTAG  887

seq1  CTAGCAACCCCCAGTGATCTTCCTGTCTCAGTCCTCCGATTTTAGGGCCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACCCCCAGTGATCTTCCTGTCTCAGTCCTCCGATTTTAGGGCCC  937

seq1  TTCAACCCTGAGATTACCGGCCATACCATCTGGCTTCTTAGGGTGCGGGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCTGAGATTACCGGCCATACCATCTGGCTTCTTAGGGTGCGGGA  987

seq1  GATCCAAATTTAGGTTCTTATTGCTGGCTCAGCAAGTGTTCTTTCCTATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAATTTAGGTTCTTATTGCTGGCTCAGCAAGTGTTCTTTCCTATT  1037

seq1  GAGCCATGTCCTCAGCTCACTTTTGTTCTTTCTGAGACAGGGAATCATGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGTCCTCAGCTCACTTTTGTTCTTTCTGAGACAGGGAATCATGT  1087

seq1  AGCCCACACTTTCCTTGAATTC  1113
      ||||||||||||||||||||||
seq2  AGCCCACACTTTCCTTGAATTC  1109