BAC Information

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BAC

Clone NameB6Ng01-233H07
Chromosome10 (Build37)
Map Location 12,449,944 - 12,587,501
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233H07.bB6Ng01-233H07.g
ACCGA045512GA045513
length1,0851,059
definitionB6Ng01-233H07.b B6Ng01-233H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,586,419 - 12,587,501)(12,449,944 - 12,450,986)
sequence
gaattccaagagagatgggatctccagggtggcatggcagcagtctcatc
gtcccgttggaacttgccctgggcctgtgaagtcaggctggaccctcggg
ggctggctgctggtggcgctggagaagcagcctgctgataacgctagtgc
ctgccagagctggaggaattcgaagctcttgtgggtcgttcagtcccgag
gacaaggcagtgaggggcatgggccattcctgctgaagtccccccacccc
ctcaccagcgtttatgaggctttcgagatagctttaactctcctttgggt
gtttactcaaaatttattgcgcctgtaaacagcattaatcacagtggcat
taaccttccctggagcgcttcttagtgtgaatggcagttcttggcactca
gcggtttcctttacaagcagaagggcaaacttgttcttcggcatccctct
tcactatcgccagcattcctagcttttggttacttgtgagtgactaggtt
tcctccacagccgtctggatgaatattcccttaggatgacaccgtttgaa
tgttgtgtattcttgaacttttgcctataaagccatcacccctggcgttc
tgttctggtataactaagaagcgtccaccctgaagggggaactggcgcct
gtgctgtggtgcgtgtaggtttcagtaggggaaacactcggtcaacgtca
ccagctgtcattttgagggaagagaacggaggacagcaattgcataggag
ccctatacaacctccgggtcattcacctctagtttctcccttatccgggt
gtagagtgtggctacttccattccaccagtgtggatggcggcagaatgtc
tttgggacacattgttactaagaaagcctttggttctagcccaatgtaac
ttgaacagcctgatagagttgcagtagcattttatttatgttattttgag
aaagggtctcactttgtggcctagctggccttgaactggcactcctctgc
ttcagtctcttgaagtagctgggttattagtgtgccaccactacacttgg
ttggcatctgggagtttggaaagaaggtattcctt

gaattctttctcagttgtctcattaatcaacgtattttcaagctactcct
tacctctatagtctaccaccaccaccaccaccccaaaaaaagtgaaaatt
agaaaaataaaagacaaatgcagatcctatctcctcgcctagtaaagtta
agatatgcgtataaatgaccagggagcaaaacagaaggtgcagacatacc
cttctctctcaagagagagagagagagagagagagagggagagagagaga
gagagagtgggagagagataaaatgtcctagcaatagacaataatgaata
gacggcctatttaaaactacaagtgacaggctagagagatggctcagtgg
ttaagagcactgactgctcttctagaggtcctgagttcaattcccatcaa
ccacatggtggctcacaaccatctgtaatgggatccgatgcactcttctt
gtgtgtctgacgacagcaacagtaaagtcacatacatgaaataaataaaa
cttcaagtgatacagttggtcaaaaatcccttgttttctaaacatttttt
taatcctaaagttatttccaaactttaatagagtttctattgctgtgata
aaacaccatggccaaaaggagcttaggaggaaaggctccgtctctaaggg
acacagggcaggaattacagcagagaggaaggaatgccgccagctgcctc
agtcatccaggctcatgctgcctgcttcctgctacaacgcaggaccacct
gccccaggggcagcaaccccaaagtgggggaggccctcccacatcaatca
ttaaagaaaatgcccgcacagacttgcctacaggctaacctgatgaagac
attgtctcaattgtggttcctcttctctaataacacactacagtgttgtc
aagctgacaagaaacaaagaagcaataagctaactggaaaggcagaaaag
gcaacccaatcttgttctgaataatgacttgatgtccgtcattattactt
tagaaattaactacctgttgggaatgcctttgaatttgaacataaaggat
cctgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12586419_12587501
seq2: B6Ng01-233H07.b_45_1129 (reverse)

seq1  AAGG-ATACC-TCCTTCCAAACTCCCAGATGCCAACCAGGTGTAGTGGT-  47
      |||| ||||| || |||||||||||||||||||||||| |||||||||| 
seq2  AAGGAATACCTTCTTTCCAAACTCCCAGATGCCAACCAAGTGTAGTGGTG  50

seq1  GCACACCTATAACCCCAGCTACTTC-AGAGGCTGAAGCAAGAGGAGTGCC  96
      ||||||  |||| |||||||||||| |||| ||||||| |||||||||||
seq2  GCACACTAATAA-CCCAGCTACTTCAAGAGACTGAAGC-AGAGGAGTGCC  98

seq1  AGTTCAAGGCCAGCCTAGGCCACACAGTGAGACCCTTTCTCAAAATAACA  146
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AGTTCAAGGCCAG-CTAGGCCACAAAGTGAGACCCTTTCTCAAAATAACA  147

seq1  TAAATAAAATGCTACTGCAACTCTATCAGGCTGTTCAAGTTACATTGGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATGCTACTGCAACTCTATCAGGCTGTTCAAGTTACATTGGGC  197

seq1  TAGAACC-AAGGCTTTCTTAGTAACAATGTGTCCCAAAGACATTCTGCCG  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCAAAGGCTTTCTTAGTAACAATGTGTCCCAAAGACATTCTGCCG  247

seq1  CCATCCACACTGGTGGAATGGAAGTAGCCACACTCTACACCCGGATAAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACACTGGTGGAATGGAAGTAGCCACACTCTACACCCGGATAAGG  297

seq1  GAGAAACTAGAGGTGAATGACCCGGAGGTTGTATAGGGCTCCTATGCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTAGAGGTGAATGACCCGGAGGTTGTATAGGGCTCCTATGCAAT  347

seq1  TGCTGTCCTCCGTTCTCTTCCCTCAAAATGACAGCTGGTGACGTTGACCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTCCGTTCTCTTCCCTCAAAATGACAGCTGGTGACGTTGACCG  397

seq1  AGTGTTTCCCCTACTGAAACCTACACGCACCACAGCACAGGCGCCAGTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCCCTACTGAAACCTACACGCACCACAGCACAGGCGCCAGTTC  447

seq1  CCCCTTCAGGGTGGACGCTTCTTAGTTATACCAGAACAGAACGCCAGGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCAGGGTGGACGCTTCTTAGTTATACCAGAACAGAACGCCAGGGG  497

seq1  TGATGGCTTTATAGGCAAAAGTTCAAGAATACACAACATTCAAACGGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTTATAGGCAAAAGTTCAAGAATACACAACATTCAAACGGTGT  547

seq1  CATCCTAAGGGAATATTCATCCAGACGGCTGTGGAGGAAACCTAGTCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAGGGAATATTCATCCAGACGGCTGTGGAGGAAACCTAGTCACT  597

seq1  CACAAGTAACCAAAAGCTAGGAATGCTGGCGATAGTGAAGAGGGATGCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAACCAAAAGCTAGGAATGCTGGCGATAGTGAAGAGGGATGCCG  647

seq1  AAGAACAAGTTTGCCCTTCTGCTTGTAAAGGAAACCGCTGAGTGCCAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGTTTGCCCTTCTGCTTGTAAAGGAAACCGCTGAGTGCCAAGA  697

seq1  ACTGCCATTCACACTAAGAAGCGCTCCAGGGAAGGTTAATGCCACTGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATTCACACTAAGAAGCGCTCCAGGGAAGGTTAATGCCACTGTGA  747

seq1  TTAATGCTGTTTACAGGCGCAATAAATTTTGAGTAAACACCCAAAGGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTGTTTACAGGCGCAATAAATTTTGAGTAAACACCCAAAGGAGA  797

seq1  GTTAAAGCTATCTCGAAAGCCTCATAAACGCTGGTGAGGGGGTGGGGGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCTATCTCGAAAGCCTCATAAACGCTGGTGAGGGGGTGGGGGGA  847

seq1  CTTCAGCAGGAATGGCCCATGCCCCTCACTGCCTTGTCCTCGGGACTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAGGAATGGCCCATGCCCCTCACTGCCTTGTCCTCGGGACTGAA  897

seq1  CGACCCACAAGAGCTTCGAATTCCTCCAGCTCTGGCAGGCACTAGCGTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCACAAGAGCTTCGAATTCCTCCAGCTCTGGCAGGCACTAGCGTTA  947

seq1  TCAGCAGGCTGCTTCTCCAGCGCCACCAGCAGCCAGCCCCCGAGGGTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGCTGCTTCTCCAGCGCCACCAGCAGCCAGCCCCCGAGGGTCCA  997

seq1  GCCTGACTTCACAGGCCCAGGGCAAGTTCCAACGGGACGATGAGACTGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTTCACAGGCCCAGGGCAAGTTCCAACGGGACGATGAGACTGCT  1047

seq1  GCCATGCCACCCTGGAGATCCCATCTCTCTTGGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCACCCTGGAGATCCCATCTCTCTTGGAATTC  1085


seq1: chr10_12449944_12450986
seq2: B6Ng01-233H07.g_66_1112

seq1  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50

seq1  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100

seq1  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150

seq1  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200

seq1  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250

seq1  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300

seq1  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350

seq1  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400

seq1  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450

seq1  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500

seq1  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550

seq1  TAATCCTAAAGTTATTTCCAAACTTTAATAGAGTTTCTATTGCTGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAAAGTTATTTCCAAACTTTAATAGAGTTTCTATTGCTGTGATA  600

seq1  AAACACCATGGCCAAAAGGAGCTTAGGAGGAAAGGCTCCGTCTCTAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATGGCCAAAAGGAGCTTAGGAGGAAAGGCTCCGTCTCTAAGGG  650

seq1  ACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGCCAGCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGCCAGCTGCCTC  700

seq1  AGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCAGGACCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCAGGACCACCT  750

seq1  GCCCCAGGGGCAGCAACCCCAAAGTGGGGGAGGCCCTCCCACATCAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGGGCAGCAACCCCAAAGTGGGGGAGGCCCTCCCACATCAATCA  800

seq1  TTAAAGAAAATGCCCGCACAGACTTGCCTACAGGCTAACCTGATGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAATGCCCGCACAGACTTGCCTACAGGCTAACCTGATGAAGAC  850

seq1  ATTGTCTCAATTGTGGTTCCTCTTCTCTAATAACACACTACAGTG-TGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTGTCTCAATTGTGGTTCCTCTTCTCTAATAACACACTACAGTGTTGTC  900

seq1  AAGCTGACAAGAAACAAAGAAGCAATAAGCAAACTGGAAAGGCAGAAAAG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCTGACAAGAAACAAAGAAGCAATAAGCTAACTGGAAAGGCAGAAAAG  950

seq1  GCAAACCAATCTTGTTCTG-ATAATGAC-TGATGTCCGTCATTATTACTT  997
      |||| |||||||||||||| |||||||| |||||||||||||||||||||
seq2  GCAACCCAATCTTGTTCTGAATAATGACTTGATGTCCGTCATTATTACTT  1000

seq1  TAGAAAAATAAACTA-CTGTATGGGATG-CTTTG-ATTTGAACATAAAG  1043
      |||  |||| ||||| ||||  || ||| ||||| ||||||||||||||
seq2  TAG--AAATTAACTACCTGTTGGGAATGCCTTTGAATTTGAACATAAAG  1047


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