BAC Information

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BAC

Clone NameB6Ng01-233L03
Chromosome10 (Build37)
Map Location 8,880,357 - 9,058,950
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L03.bB6Ng01-233L03.g
ACCGA045678GA045679
length248999
definitionB6Ng01-233L03.b B6Ng01-233L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,880,357 - 8,880,604)(9,057,952 - 9,058,950)
sequence
aggatggcatggctgataatattcatactctgatacaattaatatagtgt
ttgtgttttggcaggaaggtcagtgttaaccagtgttaggcattgcattt
tataaagtcaaacattcatgtatgtaaggaggagaaacaggctacatgga
ggcttgtggagtactaaggaactatgcaaaggatgtggaggaaacaagat
tgtctctgccccattcctttagaatggacagggaaatgatgggggggg
gaattccttggtatgatggatctctagagaacaagtcatggggggtgggt
acctttttaaaaaattaaccatgtcacatagagaggaaattctcatcttc
tgtcttctaccagtgaaggcggtgggcatcgggcatcacattaacttagt
tgctaagataaatagtaagtaaataaacgaacacagggcaaaaataggca
cgatttttccaagatgtgcaaatgtcctgattgtttgacttgccatcacc
tcttttaggttaaaatcgtcactcattccacattctctcttagatttcct
cagcccaccattgatctaaaatgtctgctgctctctcgggtaaaggagga
acatgcgcgtgtgttgcgtcccataattcctattattgaagagcctgttc
aatctcaaatgaccttttcttgtatttattgtcaagctagctttacagcc
catattaaatgggagcttttgtgagccagctgaaaagcatgttgatgagt
ctagcagcaaggctctgagagtgtttgtttgggacagccgggtcccactc
tgcctgtccaaattagagcagtgccccaccccacccccattcccaccccc
accccctgctcttcattgccccctgttgtgaagttcacagcaaaggcaag
gctttgtgtcttatttgaaccctaaagaaagtggcagacacgcctatcca
aggagaacgtgtgttctgaagtagcactctgattctatggcccggcgctc
tgagcatcagaactttgcaaaatgtaggccaggattgtctggagtagcaa
ggtcagtgtggacacttggaccactaacaaaaacaaatgataatacttaa
catttaagtgatctttatgatacccatgtttgctgtgacagattcaatca
gtgaagttggggcaagagttgaagaatgggcctcattgttatgcctgaca
gttatgacagtttcctgaagaaggctggtccacttcccctctgaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8880357_8880604
seq2: B6Ng01-233L03.b_52_299

seq1  AGGATGGCATGGCTGATAATATTCATACTCTGATACAATTAATATAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCATGGCTGATAATATTCATACTCTGATACAATTAATATAGTGT  50

seq1  TTGTGTTTTGGCAGGAAGGTCAGTGTTAACCAGTGTTAGGCATTGCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTGGCAGGAAGGTCAGTGTTAACCAGTGTTAGGCATTGCATTT  100

seq1  TATAAAGTCAAACATTCATGTATGTAAGGAGGAGAAACAGGCTACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTCAAACATTCATGTATGTAAGGAGGAGAAACAGGCTACATGGA  150

seq1  GGCTTGTGGAGTACTAAGGAACTATGCAAAGGATGTGGAGGAAACAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGAGTACTAAGGAACTATGCAAAGGATGTGGAGGAAACAAGAT  200

seq1  TGTCTCTGCCCCATTCCTTTAGAATGGACAGGGAAATGATGGGGGGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCCCATTCCTTTAGAATGGACAGGGAAATGATGGGGGGGG  248

seq1: chr10_9057952_9058950
seq2: B6Ng01-233L03.g_66_1064 (reverse)

seq1  TTTC-TCAGA-GGGAAGTGGACCAGCCT--CTCAGGAAACTGTCATAACT  46
      |||| ||||| |||||||||||||||||   |||||||||||||||||||
seq2  TTTCTTCAGAGGGGAAGTGGACCAGCCTTCTTCAGGAAACTGTCATAACT  50

seq1  GCTCA-GCATAACAATGAGGCC--ATCTTCAAACTCTTGCCCCAACCTCA  93
      | ||| ||||||||||||||||   ||||| ||||||||||||||| |||
seq2  G-TCAGGCATAACAATGAGGCCCATTCTTC-AACTCTTGCCCCAACTTCA  98

seq1  CTGATTGAATCTGTCACAGCAAACATGTGTAATCATAAAGATCACTTAAA  143
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  CTGATTGAATCTGTCACAGCAAACATGGGT-ATCATAAAGATCACTTAAA  147

seq1  TGTTAAGTATTATCAATTTTGTTTTTGTTAGTGGTCCAAGTGTCCACACT  193
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TGTTAAGTATTATCA--TTTGTTTTTGTTAGTGGTCCAAGTGTCCACACT  195

seq1  GACCTTGCTACTTCCAGACAATCCTGGCCTACATTTTGCAAAGTTCTGAT  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCTAC-TCCAGACAATCCTGGCCTACATTTTGCAAAGTTCTGAT  244

seq1  GCTCAGAGCGCCGGGCCATAGAATCAGAGTGCTACTTCAGAACACACGTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCGCCGGGCCATAGAATCAGAGTGCTACTTCAGAACACACGTT  294

seq1  CTCCTTGGATAGGCGTTTCTGCCACTTTCTTTAGGGTTCAAATTAAGACA  343
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CTCCTTGGATAGGCGTGTCTGCCACTTTCTTTAGGGTTCAAA-TAAGACA  343

seq1  CAAAGCCTTGCCTTTGCTGTGAACTTCACAACAGGGGGCAATGAAGAGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTTGCCTTTGCTGTGAACTTCACAACAGGGGGCAATGAAGAGCA  393

seq1  GGGGGTGGGGGTGGGAATGGGGGTGGGGTGGGGCACTGCTCTAATTTGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGGTGGGAATGGGGGTGGGGTGGGGCACTGCTCTAATTTGGA  443

seq1  CAGGCAGAGTGGGACCCGGCTGTCCCAAACAAACACTCTCAGAGCCTTGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGAGTGGGACCCGGCTGTCCCAAACAAACACTCTCAGAGCCTTGC  493

seq1  TGCTAGACTCATCAACATGCTTTTCAGCTGGCTCACAAAAGCTCCCATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACTCATCAACATGCTTTTCAGCTGGCTCACAAAAGCTCCCATTT  543

seq1  AATATGGGCTGTAAAGCTAGCTTGACAATAAATACAAGAAAAGGTCATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGCTGTAAAGCTAGCTTGACAATAAATACAAGAAAAGGTCATTT  593

seq1  GAGATTGAACAGGCTCTTCAATAATAGGAATTATGGGACGCAACACACGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAACAGGCTCTTCAATAATAGGAATTATGGGACGCAACACACGC  643

seq1  GCATGTTCCTCCTTTACCCGAGAGAGCAGCAGACATTTTAGATCAATGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCCTCCTTTACCCGAGAGAGCAGCAGACATTTTAGATCAATGGT  693

seq1  GGGCTGAGGAAATCTAAGAGAGAATGTGGAATGAGTGACGATTTTAACCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGAAATCTAAGAGAGAATGTGGAATGAGTGACGATTTTAACCT  743

seq1  AAAAGAGGTGATGGCAAGTCAAACAATCAGGACATTTGCACATCTTGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTGATGGCAAGTCAAACAATCAGGACATTTGCACATCTTGGAA  793

seq1  AAATCGTGCCTATTTTTGCCCTGTGTTCGTTTATTTACTTACTATTTATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTGCCTATTTTTGCCCTGTGTTCGTTTATTTACTTACTATTTATC  843

seq1  TTAGCAACTAAGTTAATGTGATGCCCGATGCCCACCGCCTTCACTGGTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACTAAGTTAATGTGATGCCCGATGCCCACCGCCTTCACTGGTAG  893

seq1  AAGACAGAAGATGAGAATTTCCTCTCTATGTGACATGGTTAATTTTTTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAGATGAGAATTTCCTCTCTATGTGACATGGTTAATTTTTTAA  943

seq1  AAAGGTACCCACCCCCCATGACTTGTTCTCTAGAGATCCATCATACCAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCCACCCCCCATGACTTGTTCTCTAGAGATCCATCATACCAAG  993

seq1  GAATTC  999
      ||||||
seq2  GAATTC  999