BAC Information

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BAC

Clone NameB6Ng01-234F12
Chromosome10 (Build37)
Map Location 126,604,509 - 126,778,003
singlet/doubletdoublet
Overlap geneB4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1
Upstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028
Downstream geneInhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234F12.bB6Ng01-234F12.g
ACCGA046137GA046138
length9451,136
definitionB6Ng01-234F12.b B6Ng01-234F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,777,059 - 126,778,003)(126,604,509 - 126,605,642)
sequence
gaattctggacttctgagtcccaaagactgtgggcagggcccccgaggaa
gaggaagagctggggagaccttgttttgaccctctgacctcaggaccacc
ggggcagctgaagccaggcgccgggagacccctactggggcagagcggga
ccactggctactgccagcttgtgtatccctgttggccccccgcccaagcg
ggatctggggaccgaggcccctcctctggctcagaccaccctgcctgccc
ttgctccccgctctgaatcctctttcaggccccatgaccctgaaacaatc
aacccaggacagttagctttgggaacagcatcaaggaaaggaaactccgt
agaggccgagggtttggggcatccggagaaccagggactttatggtatag
gtctttccttccagtacggggagaaaagatgggcagttttcttctgggaa
gaaagttcgtgaacgcgggtgatttaccctaggggggcggggttcagaag
gacccccctccattatctctctgggcatccccgccggacagacgtctccg
actcactcttgacgtcactagggggttcccgggggtctataggggttaac
ccttaggaagccggcggagatacccaggaatccaaggtgtcctctccgcg
cacaccttatttacacaggcacttctttctcttagtttctggtttctttt
ttcccactccactatagggaccccactttccaatagtgcctccccccccc
cccccgggcgctactgcctgctttcagatgcgctgagagagggaagaatg
ttccacccttcaccccccccctcgcttttctgggctccccaggcgggcgg
gggaagctgagccgtctgcagccagaagcctgcggcggcgacttgggtgg
gccgagaaggcacgggggcgggaaagcgggaccggaaaatggggg
gaattcaagactgtctgtgaaattctggcttcctcattctacctcccagg
gctaagtctgcaggaagcttctgtccaggagatataccaggtgagagaaa
ccggtaaagaggtgggcttggagaatgaagaattcttgatgggttacaga
gccccactccacacccacacccacacccaggcatgcagggttgaaaaggc
aagaggcgggtcagggacctaaggctgctgtctctcaccctcttccaggt
gaacctgagtgcttctctaggcacctgggacgtggcaggggaagtaacag
gagtgactctcacgggagaggggcaaccggatctcacccttgccagccca
gttctggataaactcaaccggcagctgcaactggtgacttacagcagccg
gagctaccaggccaacacagcagacacaggtgggaggcccgaggaggggt
agggacagactgagagaacagaaagaaccagaaaagcaaatgaccacgtg
tgggaggccctcgggcaatggccagaacagcctagacacacaatgaatgt
tgcaagtgggccagcagggccaggagtcagaggagcctttgtttatctag
ggccaaaacaggccagggagaaaccagagctggagagcattcccacttct
gtctgtcatcacggctccaggaagtgacctgttcctggctgtttctagcc
caacacttaccttgccaagctccctcacccttcctccttttttttctcca
aaactggcttttctgaacctgcgcctaccttagggcctttgcatctgccg
tttttcaggaatgttttttgcctaagtttgtttgtttgctttcaaggttg
gctccctcttgatgtttacatctgggctcaacgtctcctgtttgcttgaa
acaattgtcccttgcctccgctttacactagacgttcttattactcagcc
ctaagctttgacgttgtaaaatatggacatttacttttctgtggcctaag
ctagttcctgcaatagtttatctctgtaagattaccatgaggattaaatg
gccttcatccattttagaacacgattcattttttgggtttgtttggtttg
gttttgaaaaccatctcaattatttttagctctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126777059_126778003
seq2: B6Ng01-234F12.b_47_990 (reverse)

seq1  CCCCCTTTTCCCGGTCCCGCCTTCCCCGCCCCCGTGCCTTCTCGGCCCAC  50
       |||| ||| ||||||||| ||| ||||||||||||||||||||||||||
seq2  -CCCCATTTTCCGGTCCCG-CTTTCCCGCCCCCGTGCCTTCTCGGCCCAC  48

seq1  CCAAGTCGCCGCCGCAGGC-TCTGGCTGCAGACGGCTCAGCTT-CCCCGC  98
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  CCAAGTCGCCGCCGCAGGCTTCTGGCTGCAGACGGCTCAGCTTCCCCCGC  98

seq1  CCGCCTGGGGAGCCCAGAAAAGCGAGGGGGGGGGTGAAGGGTGGAACATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGGGGAGCCCAGAAAAGCGAGGGGGGGGGTGAAGGGTGGAACATT  148

seq1  CTTCCCTCTCTCAGCGCATCCTGAAAGCAGGCAGTAGCGCCC-GGGGGGG  197
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  CTTCCCTCTCTCAGCGCAT-CTGAAAGCAGGCAGTAGCGCCCGGGGGGGG  197

seq1  GGGGGGAGGCACTATTGGAAAGTGGGGTCCCTATAGTGGAGTGGGAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGCACTATTGGAAAGTGGGGTCCCTATAGTGGAGTGGGAAAAA  247

seq1  AGAAACCAGAAACTAAGAGAAAGAAGTGCCTGTGTAAATAAGGTGTGCGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGAAACTAAGAGAAAGAAGTGCCTGTGTAAATAAGGTGTGCGC  297

seq1  GGAGAGGACACCTTGGATTCCTGGGTATCTCCGCCGGCTTCCTAAGGGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGACACCTTGGATTCCTGGGTATCTCCGCCGGCTTCCTAAGGGTT  347

seq1  AACCCCTATAGACCCCCGGGAACCCCCTAGTGACGTCAAGAGTGAGTCGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTATAGACCCCCGGGAACCCCCTAGTGACGTCAAGAGTGAGTCGG  397

seq1  AGACGTCTGTCCGGCGGGGATGCCCAGAGAGATAATGGAGGGGGGTCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCTGTCCGGCGGGGATGCCCAGAGAGATAATGGAGGGGGGTCCTT  447

seq1  CTGAACCCCGCCCCCCTAGGGTAAATCACCCGCGTTCACGAACTTTCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCCGCCCCCCTAGGGTAAATCACCCGCGTTCACGAACTTTCTTC  497

seq1  CCAGAAGAAAACTGCCCATCTTTTCTCCCCGTACTGGAAGGAAAGACCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAAAACTGCCCATCTTTTCTCCCCGTACTGGAAGGAAAGACCTA  547

seq1  TACCATAAAGTCCCTGGTTCTCCGGATGCCCCAAACCCTCGGCCTCTACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAAGTCCCTGGTTCTCCGGATGCCCCAAACCCTCGGCCTCTACG  597

seq1  GAGTTTCCTTTCCTTGATGCTGTTCCCAAAGCTAACTGTCCTGGGTTGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCTTTCCTTGATGCTGTTCCCAAAGCTAACTGTCCTGGGTTGAT  647

seq1  TGTTTCAGGGTCATGGGGCCTGAAAGAGGATTCAGAGCGGGGAGCAAGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGGGTCATGGGGCCTGAAAGAGGATTCAGAGCGGGGAGCAAGGG  697

seq1  CAGGCAGGGTGGTCTGAGCCAGAGGAGGGGCCTCGGTCCCCAGATCCCGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGGTGGTCTGAGCCAGAGGAGGGGCCTCGGTCCCCAGATCCCGC  747

seq1  TTGGGCGGGGGGCCAACAGGGATACACAAGCTGGCAGTAGCCAGTGGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCGGGGGGCCAACAGGGATACACAAGCTGGCAGTAGCCAGTGGTCC  797

seq1  CGCTCTGCCCCAGTAGGGGTCTCCCGGCGCCTGGCTTCAGCTGCCCCGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGCCCCAGTAGGGGTCTCCCGGCGCCTGGCTTCAGCTGCCCCGGT  847

seq1  GGTCCTGAGGTCAGAGGGTCAAAACAAGGTCTCCCCAGCTCTTCCTCTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGGTCAGAGGGTCAAAACAAGGTCTCCCCAGCTCTTCCTCTTC  897

seq1  CTCGGGGGCCCTGCCCACAGTCTTTGGGAACTCAGAAGTCCAGAATTC  945
      |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCGGGGGCCCTGCCCACAGTCTTTGGG-ACTCAGAAGTCCAGAATTC  944

seq1: chr10_126604509_126605642
seq2: B6Ng01-234F12.g_71_1206

seq1  GAATTCAAGACTGTCTGTGAAATTCTGGCTTCCTCATTCTACCTCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTGTCTGTGAAATTCTGGCTTCCTCATTCTACCTCCCAGG  50

seq1  GCTAAGTCTGCAGGAAGCTTCTGTCCAGGAGATATACCAGGTGAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCTGCAGGAAGCTTCTGTCCAGGAGATATACCAGGTGAGAGAAA  100

seq1  CCGGTAAAGAGGTGGGCTTGGAGAATGAAGAATTCTTGATGGGTTACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAAAGAGGTGGGCTTGGAGAATGAAGAATTCTTGATGGGTTACAGA  150

seq1  GCCCCACTCCACACCCACACCCACACCCAGGCATGCAGGGTTGAAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTCCACACCCACACCCACACCCAGGCATGCAGGGTTGAAAAGGC  200

seq1  AAGAGGCGGGTCAGGGACCTAAGGCTGCTGTCTCTCACCCTCTTCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCGGGTCAGGGACCTAAGGCTGCTGTCTCTCACCCTCTTCCAGGT  250

seq1  GAACCTGAGTGCTTCTCTAGGCACCTGGGACGTGGCAGGGGAAGTAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGTGCTTCTCTAGGCACCTGGGACGTGGCAGGGGAAGTAACAG  300

seq1  GAGTGACTCTCACGGGAGAGGGGCAACCGGATCTCACCCTTGCCAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTCTCACGGGAGAGGGGCAACCGGATCTCACCCTTGCCAGCCCA  350

seq1  GTTCTGGATAAACTCAACCGGCAGCTGCAACTGGTGACTTACAGCAGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGATAAACTCAACCGGCAGCTGCAACTGGTGACTTACAGCAGCCG  400

seq1  GAGCTACCAGGCCAACACAGCAGACACAGGTGGGAGGCCCGAGGAGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCAGGCCAACACAGCAGACACAGGTGGGAGGCCCGAGGAGGGGT  450

seq1  AGGGACAGACTGAGAGAACAGAAAGAACCAGAAAAGCAAATGACCACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGACTGAGAGAACAGAAAGAACCAGAAAAGCAAATGACCACGTG  500

seq1  TGGGAGGCCCTCGGGCAATGGCCAGAACAGCCTAGACACACAATGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCCCTCGGGCAATGGCCAGAACAGCCTAGACACACAATGAATGT  550

seq1  TGCAAGTGGGCCAGCAGGGCCAGGAGTCAGAGGAGCCTTTGTTTATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGGGCCAGCAGGGCCAGGAGTCAGAGGAGCCTTTGTTTATCTAG  600

seq1  GGCCAAAACAGGCCAGGGAGAAACCAGAGCTGGAGAGCATTCCCACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAACAGGCCAGGGAGAAACCAGAGCTGGAGAGCATTCCCACTTCT  650

seq1  GTCTGTCATCACGGCTCCAGGAAGTGACCTGTTCCTGGCTGTTTCTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATCACGGCTCCAGGAAGTGACCTGTTCCTGGCTGTTTCTAGCC  700

seq1  CAACACTTACCTTGCCAAGCTCCCTCACCCTTCCTCC-TTTTTTTCTCCA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACACTTACCTTGCCAAGCTCCCTCACCCTTCCTCCTTTTTTTTCTCCA  750

seq1  AAACTGGCTTTTCTGAACCTGCGCCTACCTTAGGGCCTTTGCATCTGCCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCTTTTCTGAACCTGCGCCTACCTTAGGGCCTTTGCATCTGCCG  800

seq1  -TTTTCAGGAATG-TTTTTGCCTAAGTTTGTTTGTTTGCTTTCAAGGTTG  847
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGAATGTTTTTTGCCTAAGTTTGTTTGTTTGCTTTCAAGGTTG  850

seq1  GCTCCCTCTTGATGTTTACATCTGGGCTCAGACGTCTCCTGTTTGCTTGA  897
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTCCCTCTTGATGTTTACATCTGGGCTCA-ACGTCTCCTGTTTGCTTGA  899

seq1  AACAA-TGTCCCTTGCCTCCGCTTTTACACTAGACGTTTCTTATTTACTC  946
      ||||| |||||||||||||||| ||||||||||||| |||||| ||||||
seq2  AACAATTGTCCCTTGCCTCCGC-TTTACACTAGACG-TTCTTA-TTACTC  946

seq1  AG-CCTAAGCTTTGACGTTGTAAAATATGGACAATTTACTTTTCTGT-GC  994
      || ||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AGCCCTAAGCTTTGACGTTGTAAAATATGGAC-ATTTACTTTTCTGTGGC  995

seq1  CTAAGCTTAGTTTCCTGCAATAGTTTATCT-AGTAAGATTACCATGAAGA  1043
      |||||| ||| |||||||||||||||||||  ||||||||||||||| ||
seq2  CTAAGC-TAG-TTCCTGCAATAGTTTATCTCTGTAAGATTACCATGAGGA  1043

seq1  TTAAATGG-CTTCATCTA-TTTAGAACACATTTTCAATTTTTTTGTTTTG  1091
      |||||||| ||||||| | ||||||||||  ||   ||||||| | ||||
seq2  TTAAATGGCCTTCATCCATTTTAGAACACGATT--CATTTTTTGGGTTTG  1091

seq1  TTTTGTTTTGTTTTGAAAACCATCTCATTTA--TTTAGCTCTGTC  1134
      ||| |||| |||||||||||||||||| |||  ||||||||||||
seq2  TTTGGTTTGGTTTTGAAAACCATCTCAATTATTTTTAGCTCTGTC  1136