BAC Information

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BAC

Clone NameB6Ng01-235J03
Chromosome10 (Build37)
Map Location 49,057,290 - 49,185,853
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J03.bB6Ng01-235J03.g
ACCGA047014GA047015
length1,0471,127
definitionB6Ng01-235J03.b B6Ng01-235J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,057,290 - 49,057,946)(49,184,720 - 49,185,853)
sequence
gaattcctggcccaagagggaccctcccagagtcatcaggacacaggagc
caaggattagatggggagaagattcttctggattctctctgcaccacaac
tgaccatgcctaagattatttggcatcatcagagacctgtaccacaactc
tccatgcctaagattatttggcatcatcagagaccagttctcttaccaca
gcgagccctcattatccccaaaacaccagaaaagcaggactctgatttaa
aatcacatcttatgatgatggtagagtactttaagaaggatgtaaataaa
tcccttaaagaaatacaagagaacacaggtaaagaggtagaagacattaa
atagaaaacacaaaaatcccttaatgaattacaggaaaacacaaccaaac
aggtgaaggaattgaacaaatccaaccaggatgtaaaaatggaaatagaa
acaataaagaaacacaaaggaagacaaccctggagatagaaaacctagga
aagagatcaggagtcatagatgcaagcatcaccaacagaatacaagagct
agaagagattctctcaggagcagaaaataccatagaaaacattgacacaa
caggcaaggaaaatgcaaagatcaaaaagctcctaacacaaaacctccag
aaaattcaggacacagtgagaagaccaaacttaagtataataggtataga
agagagtgatgatttcaacttaaagggcaagtaaatatcttcaacaaaat
taaagaagaaaacttcccaaatgtaaagaaagcaatgcccatagacatcc
aagaagcctacagaactacaaatagattggaccagaaaagaaattcctcc
tgtcacataatagtcaaaacaccagatgcacaaaacaaagaatatttaaa
agcaataagggaaaaaggtcaagtaacatataaaggcagacctatcagga
ttacaccagactacttaccagagattttgaaaggttgacaatcatagcag
atgtcatacagaacctagaagaacatgataccagcccagactatgat
gaattctaccctgtagagatttactgttctcgaagtaggaggcagatggt
aaaaaagaaatgacgaaatgtaagtctggtggcgatacgtgctgttgagg
attagagaagggactggtaaaggaagcaggactgaagttgcaaagccttt
caagtaaacccttcttgacacaagagtgtaaacactccatttccctttgc
acaggtacttatcattcactgaaaaactgtctgtgaatttgtcaattaag
gctagagactgatatattatttaactgattaaattatttctggctcttga
ctatttacaaattgccacagtcatagttagatgcttttgaatatgtcaag
tatctcaaatggatagagtatttataacttcaaatgggctatcacgcgca
gttgatttcactgtgctatttctgccactgagaagaaactcaataatcaa
gtcatatatgccatacattgggttttgaggctatattcatttaaaactgt
ctgctaatttctgcttatcaaattatttgatctatcttgaagcagatctg
ccattttttaaaatttttattagatatgttcttcatttacatttcaaatc
tatcctgaaaatcccctatactctccccctgccctgcccccctacccacc
ctctcctacttcttggccctggggttcccctgtactggggaatatgaagt
ttgcaagaccaaggggcctctcttcccaatgatggccgactaggccatct
tctgctacatatgcagctagagacacgagctctggggtactgtcagttca
tattgttgctccacctatagggttgcagaccccatcaggtccttctgtag
atctgccatttttatggacttagagttaccagaactttgaatggcacact
ctgtgacatgattgatgagaagagagtgggttattacaattggatgcagg
ctcatactttttaatgcctgactttcagaacactggctaatctttcataa
catgagactaccacactttttttttaaatttaacctttttatagatattt
cttatttaacatttcaaatgttatcccttctagtttcccctcttaaatcc
tatccctcccccatctacctctgctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49057290_49057946
seq2: B6Ng01-235J03.b_46_702

seq1  GAATTCCTGGCCCAAGAGGGACCCTCCCAGAGTCATCAGGACACAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCCCAAGAGGGACCCTCCCAGAGTCATCAGGACACAGGAGC  50

seq1  CAAGGATTAGATGGGGAGAAGATTCTTCTGGATTCTCTCTGCACCACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTAGATGGGGAGAAGATTCTTCTGGATTCTCTCTGCACCACAAC  100

seq1  TGACCATGCCTAAGATTATTTGGCATCATCAGAGACCTGTACCACAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGCCTAAGATTATTTGGCATCATCAGAGACCTGTACCACAACTC  150

seq1  TCCATGCCTAAGATTATTTGGCATCATCAGAGACCAGTTCTCTTACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTAAGATTATTTGGCATCATCAGAGACCAGTTCTCTTACCACA  200

seq1  GCGAGCCCTCATTATCCCCAAAACACCAGAAAAGCAGGACTCTGATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCCTCATTATCCCCAAAACACCAGAAAAGCAGGACTCTGATTTAA  250

seq1  AATCACATCTTATGATGATGGTAGAGTACTTTAAGAAGGATGTAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATCTTATGATGATGGTAGAGTACTTTAAGAAGGATGTAAATAAA  300

seq1  TCCCTTAAAGAAATACAAGAGAACACAGGTAAAGAGGTAGAAGACATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAAGAAATACAAGAGAACACAGGTAAAGAGGTAGAAGACATTAA  350

seq1  ATAGAAAACACAAAAATCCCTTAATGAATTACAGGAAAACACAACCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACACAAAAATCCCTTAATGAATTACAGGAAAACACAACCAAAC  400

seq1  AGGTGAAGGAATTGAACAAATCCAACCAGGATGTAAAAATGGAAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGAATTGAACAAATCCAACCAGGATGTAAAAATGGAAATAGAA  450

seq1  ACAATAAAGAAACACAAAGGAAGACAACCCTGGAGATAGAAAACCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAGAAACACAAAGGAAGACAACCCTGGAGATAGAAAACCTAGGA  500

seq1  AAGAGATCAGGAGTCATAGATGCAAGCATCACCAACAGAATACAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCAGGAGTCATAGATGCAAGCATCACCAACAGAATACAAGAGCT  550

seq1  AGAAGAGATTCTCTCAGGAGCAGAAAATACCATAGAAAACATTGACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATTCTCTCAGGAGCAGAAAATACCATAGAAAACATTGACACAA  600

seq1  CAGGCAAGGAAAATGCAAAGATCAAAAAGCTCCTAACACAAAACCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGGAAAATGCAAAGATCAAAAAGCTCCTAACACAAAACCTCCAG  650

seq1  AAAATTC  657
      |||||||
seq2  AAAATTC  657

seq1: chr10_49184720_49185853
seq2: B6Ng01-235J03.g_65_1191 (reverse)

seq1  GGAGCAGAGGTAGATGGGGGAGGGGATAGGGGATTTTAGAGGGGAAACTA  50
      ||||||||||||||||||||| ||||||  |||||| |||||||||||||
seq2  GGAGCAGAGGTAGATGGGGGA-GGGATA--GGATTTAAGAGGGGAAACTA  47

seq1  GGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAA  100
      |   | ||||||||||||||||||| ||  ||| |||||||||  |||| 
seq2  G---AAGGGATAACATTTGAAATGTTAAATAAG-AAATATCTATAAAAAG  93

seq1  GTTAAATTTAAAAAAAAAGTGTGGTAGTCTCATG-TATGAAAGATTAGCC  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTAAATTTAAAAAAAAAGTGTGGTAGTCTCATGTTATGAAAGATTAGCC  143

seq1  AAGTGTTCTGAAAGTCAGGCAATAAAAAGTATGAGCCTGCATCCAATTGT  199
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AGTGTTCTGAAAGTCAGGCATTAAAAAGTATGAGCCTGCATCCAATTGT  192

seq1  AATAACCCACTCTCTTCTCATCAATCATGTCACAGAGTGTGCCATTCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCACTCTCTTCTCATCAATCATGTCACAGAGTGTGCCATTCAAA  242

seq1  GTTCTGGTAACTCTAAGTCCATAAAAATGGCAGATCTACAGAAGGACCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTAACTCTAAGTCCATAAAAATGGCAGATCTACAGAAGGACCTG  292

seq1  ATGGGGTCTGCAACCCTATAGGTGGAGCAACAATATGAACTGACAGTACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCTGCAACCCTATAGGTGGAGCAACAATATGAACTGACAGTACC  342

seq1  CCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGG  392

seq1  CCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTCATATTCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTCATATTCCCCA  442

seq1  GTACAGGGGAACCCCAGGGCCAAGAAGTAGGAGAGGGTGGGTAGGGGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGAACCCCAGGGCCAAGAAGTAGGAGAGGGTGGGTAGGGGGGC  492

seq1  AGGGCAGGGGGAGAGTATAGGGGATTTTCAGGATAGATTTGAAATGTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGGGAGAGTATAGGGGATTTTCAGGATAGATTTGAAATGTAAA  542

seq1  TGAAGAACATATCTAATAAAAATTTTAAAAAATGGCAGATCTGCTTCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACATATCTAATAAAAATTTTAAAAAATGGCAGATCTGCTTCAAG  592

seq1  ATAGATCAAATAATTTGATAAGCAGAAATTAGCAGACAGTTTTAAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCAAATAATTTGATAAGCAGAAATTAGCAGACAGTTTTAAATGAA  642

seq1  TATAGCCTCAAAACCCAATGTATGGCATATATGACTTGATTATTGAGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTCAAAACCCAATGTATGGCATATATGACTTGATTATTGAGTTT  692

seq1  CTTCTCAGTGGCAGAAATAGCACAGTGAAATCAACTGCGCGTGATAGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGTGGCAGAAATAGCACAGTGAAATCAACTGCGCGTGATAGCCC  742

seq1  ATTTGAAGTTATAAATACTCTATCCATTTGAGATACTTGACATATTCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTTATAAATACTCTATCCATTTGAGATACTTGACATATTCAAA  792

seq1  AGCATCTAACTATGACTGTGGCAATTTGTAAATAGTCAAGAGCCAGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAACTATGACTGTGGCAATTTGTAAATAGTCAAGAGCCAGAAAT  842

seq1  AATTTAATCAGTTAAATAATATATCAGTCTCTAGCCTTAATTGACAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCAGTTAAATAATATATCAGTCTCTAGCCTTAATTGACAAATT  892

seq1  CACAGACAGTTTTTCAGTGAATGATAAGTACCTGTGCAAAGGGAAATGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGTTTTTCAGTGAATGATAAGTACCTGTGCAAAGGGAAATGGA  942

seq1  GTGTTTACACTCTTGTGTCAAGAAGGGTTTACTTGAAAGGCTTTGCAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACACTCTTGTGTCAAGAAGGGTTTACTTGAAAGGCTTTGCAACT  992

seq1  TCAGTCCTGCTTCCTTTACCAGTCCCTTCTCTAATCCTCAACAGCACGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTGCTTCCTTTACCAGTCCCTTCTCTAATCCTCAACAGCACGTA  1042

seq1  TCGCCACCAGACTTACATTTCGTCATTTCTTTTTTACCATCTGCCTCCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACCAGACTTACATTTCGTCATTTCTTTTTTACCATCTGCCTCCTA  1092

seq1  CTTCGAGAACAGTAAATCTCTACAGGGTAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  CTTCGAGAACAGTAAATCTCTACAGGGTAGAATTC  1127