BAC Information

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BAC

Clone NameB6Ng01-235P02
Chromosome10 (Build37)
Map Location 87,475,502 - 87,476,662
singlet/doubletsinglet
Overlap genenone
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235P02.bB6Ng01-235P02.g
ACCGA047292GA047293
length1,2211,153
definitionB6Ng01-235P02.b B6Ng01-235P02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaca
aaaaaacaaaaaaaaaacaaaaacaaaaaaacaaacaaacaaacaaacaa
acaaaaaatgcccactccagaggttagccttagacaagccaaatcaggat
ctcttttggataaacgtgaatacttgcattctaaaatgccactccctgga
aagctgtgtggctagcatagccaccttcttcattgattgtttctaggcct
tcattgtgttacctgcagcaatgcttttactgtcagggtctatgggactt
cactgaccaaaagctctaaaagaggtaatccattcctagttctaggcttt
ttgttagcctgcagtatctagcaggggcattgttgccatgaaatagggca
gttccattaaaattatatatgcacattgtattactcagggttctctagag
ccacagtctctacataccaccactcctgaatctgggacttgctttgtccc
aggctgaccttgaactcagagatcttcttgccttagtctcctaggattca
tagccactctgcctcaagatctccatgccaagatccaagtcagaaatttg
tatctcccagcctcaagatctgggtcacaggtgagccttccgattccaga
tggtagttcattccagatatagtcaagttggcaaccaggaatagccatta
taatccaccccttgtcacttgacataaataatatctcatgtccccatgaa
acaataacaagatcacgaatatgcataacataatataactattccttgta
aaattgcaaacgcatttgtaaatttacaatggggaaatgtcccttgggaa
cgttattttagtatctcaacgtaaatatcaattgatattaaataaattgg
aagaaagcacaaataactacacaaatatgttcttaacagaataaaacaga
agaattcatattactttataatccttgtttctgcaactgggttatgtggc
cttagatggtatttataactacctttcttactaccattctgtatttcttt
accctcggcagactcagcagtctggctcttttcttgaggagtgaccatac
ttcattctgatggatctgtgtcgttgtcatccagcttgcatagcctgttt
tgatgcatgactagtccaggactggtgacctagagaagcatatggaatca
tctctgacgtcactctcacga
gaattctatcccaggtggttccctttagaccttttgtgtttgcattcctc
tgttttatgtaagattccagttacctcatttgtaccttgcgaatatgtca
cccaacttccttattgtcttctgcataaaaagtctgatgctcgatttgaa
aaatacattcagattccacacgacctctcctgtgtgcgtctgtctgtcaa
ttcatcctacgctttgtccacccgagactagagacccgttccacgcagac
aaaggggcacagagggtctgcggcattagttcccatcatctaaaaaaaaa
gtctccgaggacaactgaaagaggcactgattcttgggtatagcagaatg
tgatgatgaagaatcaccttctcttcaagagtcttcagtagcaaccactg
aaacaaacaaaatggctgggctgagtggacactgcacacaataggactgt
tatggctttgattttccttaaaagggagagaagttaagttgtctagaaag
gcgttcagaggcaaaaggcatcctatagaattgtgaatcttctgtctctc
agttgccatgctatgtgaatgaatcctttagagaaatgagaaaaactatt
taagaaacttatgtacactcaataaatttcaaagaaaagatagaatttat
aaatgttttcaaactgaaagcatgaaaaaaagtaagaatctatcaaacca
ctatgttcccaaatggaggtacttagcactatcatggcaaactgaaccat
agactgctgtgccccctgaggaagaagcatctaaagaccccactgaaagc
ttctgctagaatccttcagccacattcctttttcttagcacagacccaat
ccagactagggtggaatttcagagtcggtagataccccaaatacagaatt
cagaagaaaatctttatattttcttggatcatgaaattattttattatca
aagaaactctagaaacttctaaggaaaaaatgggacccaaaattatactt
aaccaagcaatatgccacaacctcctagtcaagcaaatgtactagtatga
ctttctcttcataccacctccactccttagcacattcatcctcattgaat
agtaccaactaggttaagcagaatccaatctagcagtggccaaactaaat
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87475502_87476662
seq2: B6Ng01-235P02.g_70_1222

seq1  GAATTCTATCCCAGGTGGTTCCCTTTAGACCTTTTGTGTTTGCATTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCAGGTGGTTCCCTTTAGACCTTTTGTGTTTGCATTCCTC  50

seq1  TGTTTTATGTAAGATTCCAGTTACCTCATTTGTACCTTGCGAATATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTAAGATTCCAGTTACCTCATTTGTACCTTGCGAATATGTCA  100

seq1  CCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATTTGAA  150

seq1  AAATACATTCAGATTCCACACGACCTCTCCTGTGTGCGTCTGTCTGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTCAGATTCCACACGACCTCTCCTGTGTGCGTCTGTCTGTCAA  200

seq1  TTCATCCTACGCTTTGTCCACCCGAGACTAGAGACCCGTTCCACGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTACGCTTTGTCCACCCGAGACTAGAGACCCGTTCCACGCAGAC  250

seq1  AAAGGGGCACAGAGGGTCTGCGGCATTAGTTCCCATCATCTAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCACAGAGGGTCTGCGGCATTAGTTCCCATCATCTAAAAAAAAA  300

seq1  GTCTCCGAGGACAACTGAAAGAGGCACTGATTCTTGGGTATAGCAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGAGGACAACTGAAAGAGGCACTGATTCTTGGGTATAGCAGAATG  350

seq1  TGATGATGAAGAATCACCTTCTCTTCAAGAGTCTTCAGTAGCAACCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGAAGAATCACCTTCTCTTCAAGAGTCTTCAGTAGCAACCACTG  400

seq1  AAACAAACAAAATGGCTGGGCTGAGTGGACACTGCACACAATAGGACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAATGGCTGGGCTGAGTGGACACTGCACACAATAGGACTGT  450

seq1  TATGGCTTTGATTTTCCTTAAAAGGGAGAGAAGTTAAGTTGTCTAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTTGATTTTCCTTAAAAGGGAGAGAAGTTAAGTTGTCTAGAAAG  500

seq1  GCGTTCAGAGGCAAAAGGCATCCTATAGAATTGTGAATCTTCTGTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCAGAGGCAAAAGGCATCCTATAGAATTGTGAATCTTCTGTCTCTC  550

seq1  AGTTGCCATGCTATGTGAATGAATCCTTTAGAGAAATGAGAAAAACTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCATGCTATGTGAATGAATCCTTTAGAGAAATGAGAAAAACTATT  600

seq1  TAAGAAACTTATGTACACTCAATAAATTTCAAAGAAAAGATAGAATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTTATGTACACTCAATAAATTTCAAAGAAAAGATAGAATTTAT  650

seq1  AAATGTTTTCAAACTGAAAGCATGAAAAAAAGTAAGAATCTATCAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCAAACTGAAAGCATGAAAAAAAGTAAGAATCTATCAAACCA  700

seq1  CTATGTTCCCAAATGGAGGTACTTAGCACTATCATGGCAAACTGAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCCCAAATGGAGGTACTTAGCACTATCATGGCAAACTGAACCAT  750

seq1  AGACTGCTGTGCCCCCTGAGGAAGAAGCATCTAAAGACCCCACTGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGTGCCCCCTGAGGAAGAAGCATCTAAAGACCCCACTGAAAGC  800

seq1  TTCTGCTAGAATCCTTCAGCCACATTCCTTTTTCTTAGCACAGACCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGAATCCTTCAGCCACATTCCTTTTTCTTAGCACAGACCCAAT  850

seq1  CCAGACTAGGGTGGAATTTCAGAGTCGGTAGATACCCCAAATACAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTAGGGTGGAATTTCAGAGTCGGTAGATACCCCAAATACAGAATT  900

seq1  CAGAAGATAATCTTTATATTTTCTTGGATCATGAAATTATTTTTATTATC  950
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAAGAAAATCTTTATATTTTCTTGGATCATGAAATTA-TTTTATTATC  949

seq1  AAAGAAACTTCTAGAAACTTCTAAGGAAAAAATGGGACCCAAAATTATAC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAC-TCTAGAAACTTCTAAGGAAAAAATGGGACCCAAAATTATAC  998

seq1  TTTAACCAAGCCAATAATGCACA--CTCCTAGTCAAGCAAAATGTAACTA  1048
       ||||||||| |||||   ||||  ||||||||||||| |||||| ||||
seq2  -TTAACCAAG-CAATATGCCACAACCTCCTAGTCAAGC-AAATGT-ACTA  1044

seq1  GTTATTGACTTTCTCCTTCAATACCACCTCCACTCCCTAGCCACAATCAT  1098
      ||   ||||||||| |||| |||||||||||||||| ||| |||| ||||
seq2  GT--ATGACTTTCT-CTTC-ATACCACCTCCACTCCTTAG-CACATTCAT  1089

seq1  -CTCAATGAATAGTACCAACTAGGTTAGGCAGATCACAAATCTAGCAGTT  1147
       |||| ||||||||||||||||||||| |||||   | ||||||||||| 
seq2  CCTCATTGAATAGTACCAACTAGGTTAAGCAGA-ATCCAATCTAGCAGTG  1138

seq1  GGCCAACT-AATTGG  1161
      | | |||| ||||||
seq2  GCCAAACTAAATTGG  1153