BAC Information

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BAC

Clone NameB6Ng01-236L24
Chromosome10 (Build37)
Map Location 26,685,360 - 26,844,305
singlet/doubletdoublet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L24.bB6Ng01-236L24.g
ACCGA047892GA047893
length1,0981,178
definitionB6Ng01-236L24.b B6Ng01-236L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,685,360 - 26,686,461)(26,843,115 - 26,844,305)
sequence
agcaatggaaacaaaaggttatagaggggtccagaaaattcaatcatata
taagtaaattgtgtgaactgttgtttattttggaattaacctgagcaaat
tcagtctgttattttctttcccttctctgttaaagtgtggtttgcaaaga
tgaacttttatgactgtcagcaaaatagaacgtaaagatgaccagtgatt
tttaactcattaactaatgaagagaacagtaatttttaaaggtctcagag
cttggtaagatgtccatgtacatgcatttaattttgtgatgaaatgtgag
aacaaagttattcagtaaaatacaggctgttgtgaccttctgattatctg
gtttacctacttgcacctgctaggcaaatgctgcaagtcatttgtccaag
gcagcctagtatatctggagatatattcatgtggttcttagagatcactc
ttatgcagactgacaacgaaagggtgcaagtgagctcctaagctacgtgt
ctctacactctcaaaccgccatcccacacacatggaccaggtaatgcagt
ttatagagccaagttggcagtttgtaaaggactcaattcatctggttaaa
agatgcaccaaacctgacagaaaagaattccaggagattgccatggccac
agcaataggatttgttatcatgggattcattggcttctttgcgaaacgga
tccatatccctattaataacgttattgtgggttgctgagtccttcctcat
tatgggacaagtgaaccagtgagggggtgacaagcacatgaggtaaaacg
ttgcctggatgctctgtggttttgtttctttcctccttcccatgaggttt
tctatttctcaaaataatttcaaaaaaaaaaaaaaggaaagaaagaaaag
aaagaatgaaagggaaagaatggaaaaggaaagaaaaggtgcaagtgaga
cgagaaagacaaagaacactaggatattgttggagccagtcttgtgctta
agagaataagctttaagaaagatcttgatgctaaagggccatggtatagt
ttgtccaagaccctccatcccagctaagctcactgagaaaaattaatc

gaattcattaaagggcttgtccaggatgctgaaggtatcaaaaaaaatca
tattttaacttttttctcttacataaaaattaaaagaagggattaaaggg
atttgaataggccctataaggaggtgtcatttctaaattcaagttgtaag
tgtagaatgcattttgtttgacatattcagggtcatgattagcagaaatc
tatagcctatcgcattaagtgagcaacgacagttgatgaaataatgatta
tgggtgtaaaataggaatgaattctaggatgtttaaataagtcattgaaa
acatatggctttgctatttttctgaccatagctattgaaaattgattcat
cttttctttttaaaagttagttttaccattctatttggtacacaaacact
gttctttcatttcttaaaatggttctttaagtacttggtatgagttgcaa
gagaacatctggtgcttggatttggctacccgagttcaccagaggctccc
tggcattttgtccgtagttcgctaggaattagttcttggcatctcccaat
gtggctgagaactgaaatgtaagtcacttctttgggcaaaagcccagact
aagaagccctcggctctccagtctcttgaaataaatgttaaatatgcata
catgttcagaagtttcaaaaagtggcttttccgtgtctctaaacatcttt
aaaaatgtgtgaagttaaacatctttattattctactttattgttctaga
tgtttgctttctttttggtaatatggaaaaatagaggggaaacgaactag
atttcacagtagagtctaactggtggtctatcattggtaatgcctgactc
cccactgtatggagtagcagtgttttcagataaggttgttctttttttaa
cataacaagttactttcatctagaaaagcatctcagttaatctcacaata
atgcattcctctgatccatgaacgctgtgtgttccctgcattatttttcc
actgatgctatttgaaaatgccccaaacaacaaatgtatgtcagagagtt
gttccttctggtagatctctgagaaacttttctcatcttctttctggagt
cctcaacactcacacttctgagattatttaaatcagttcagctgatctga
atgccagtgtataagatactttactctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_26685360_26686461
seq2: B6Ng01-236L24.b_55_1152

seq1  AGCAATGGAAACAAAAGGTTATAGAGGGGTCCAGAAAATTCAATCATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGAAACAAAAGGTTATAGAGGGGTCCAGAAAATTCAATCATATA  50

seq1  TAAGTAAATTGTGTGAACTGTTGTTTATTTTGGAATTAACCTGAGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATTGTGTGAACTGTTGTTTATTTTGGAATTAACCTGAGCAAAT  100

seq1  TCAGTCTGTTATTTTCTTTCCCTTCTCTGTTAAAGTGTGGTTTGCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTTATTTTCTTTCCCTTCTCTGTTAAAGTGTGGTTTGCAAAGA  150

seq1  TGAACTTTTATGACTGTCAGCAAAATAGAACGTAAAGATGACCAGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTATGACTGTCAGCAAAATAGAACGTAAAGATGACCAGTGATT  200

seq1  TTTAACTCATTAACTAATGAAGAGAACAGTAATTTTTAAAGGTCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCATTAACTAATGAAGAGAACAGTAATTTTTAAAGGTCTCAGAG  250

seq1  CTTGGTAAGATGTCCATGTACATGCATTTAATTTTGTGATGAAATGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAGATGTCCATGTACATGCATTTAATTTTGTGATGAAATGTGAG  300

seq1  AACAAAGTTATTCAGTAAAATACAGGCTGTTGTGACCTTCTGATTATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTTATTCAGTAAAATACAGGCTGTTGTGACCTTCTGATTATCTG  350

seq1  GTTTACCTACTTGCACCTGCTAGGCAAATGCTGCAAGTCATTTGTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTACTTGCACCTGCTAGGCAAATGCTGCAAGTCATTTGTCCAAG  400

seq1  GCAGCCTAGTATATCTGGAGATATATTCATGTGGTTCTTAGAGATCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGTATATCTGGAGATATATTCATGTGGTTCTTAGAGATCACTC  450

seq1  TTATGCAGACTGACAACGAAAGGGTGCAAGTGAGCTCCTAAGCTACGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGACTGACAACGAAAGGGTGCAAGTGAGCTCCTAAGCTACGTGT  500

seq1  CTCTACACTCTCAAACCGCCATCCCACACACATGGACCAGGTAATGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACTCTCAAACCGCCATCCCACACACATGGACCAGGTAATGCAGT  550

seq1  TTATAGAGCCAAGTTGGCAGTTTGTAAAGGACTCAATTCATCTGGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGCCAAGTTGGCAGTTTGTAAAGGACTCAATTCATCTGGTTAAA  600

seq1  AGATGCACCAAACCTGACAGAAAAGAATTCCAGGAGATTGCCATGGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACCAAACCTGACAGAAAAGAATTCCAGGAGATTGCCATGGCCAC  650

seq1  AGCAATAGGATTTGTTATCATGGGATTCATTGGCTTCTTTGCGAAACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGGATTTGTTATCATGGGATTCATTGGCTTCTTTGCGAAACGGA  700

seq1  TCCATATCCCTATTAATAACGTTATTGTGGGTTGCTGAGTCCTTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCCCTATTAATAACGTTATTGTGGGTTGCTGAGTCCTTCCTCAT  750

seq1  TATGGGACAAGTGAACCAGTGAGGGGGTGACAAGCACATGAGGTAAAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGACAAGTGAACCAGTGAGGGGGTGACAAGCACATGAGGTAAAACG  800

seq1  TTGCCTGGATGCTCTGTGGTTTTGTTTCTTTCCTCCTTCCCATGAGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGATGCTCTGTGGTTTTGTTTCTTTCCTCCTTCCCATGAGGTTT  850

seq1  TCTATTTCTCAAAATAATTTCAAAAAAAAAAAAAAAGAAAGAAAGAAAAA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  TCTATTTCTCAAAATAATTTCAAAAAAAAAAAAAAGGAAAGAAAGAAAA-  899

seq1  GAAAAGAAAGAAAGGAAAAGAAATGGAAAAGGAAAGAAAAGGTGCAAGTG  950
        |||||| |||||| |||| |||||||||||||||||||||||||||||
seq2  -GAAAGAATGAAAGGGAAAG-AATGGAAAAGGAAAGAAAAGGTGCAAGTG  947

seq1  AGACGAGAAAGACAAAAGAACACTAGGATA-TGTTGGAGCCAAGTCTTGT  999
      ||||||||||||| |||||||||||||||| |||||||||| ||||||||
seq2  AGACGAGAAAGAC-AAAGAACACTAGGATATTGTTGGAGCC-AGTCTTGT  995

seq1  GCTTAAGGAGATAAGCTTAAAGAAAGATC-TGATGCTAAAAGGGCATGGT  1048
      |||||||   |||||||| |||||||||| |||||||||| || ||||||
seq2  GCTTAAGAGAATAAGCTTTAAGAAAGATCTTGATGCTAAAGGGCCATGGT  1045

seq1  ATAGTTTGTTCAAGACC--CCA-CCCAGCTAAGCTTCCAACTTGAGAAAA  1095
      ||||||||| |||||||  ||| ||||||||||||  |    ||||||||
seq2  ATAGTTTGTCCAAGACCCTCCATCCCAGCTAAGCTCAC----TGAGAAAA  1091

seq1  ATAAATC  1102
      || ||||
seq2  ATTAATC  1098


seq1: chr10_26843115_26844305
seq2: B6Ng01-236L24.g_66_1243 (reverse)

seq1  AAGAGT-AAGTACTTTTAATCACTGGCCATCAGATCAAAGCTGAACTGAT  49
      |||||| ||||| | |||  |||||||  |||||||  ||||||||||||
seq2  AAGAGTAAAGTA-TCTTATACACTGGCATTCAGATC--AGCTGAACTGAT  47

seq1  TTTAAAATTAATCTCCAGGAAGGTGTTGAGTGTTGA-GACTTCAGAAAGA  98
      ||   || |||||| |||  | ||| |||||||||| |||| ||||||||
seq2  TT---AAATAATCT-CAG--AAGTG-TGAGTGTTGAGGACTCCAGAAAGA  90

seq1  AGATGAGAAAAGTTTCTTCCAGAGATCTACCAGGAGGGAAACAACTCTCT  148
      |||||||||||||||||  |||||||||||||| |||  |||||||||||
seq2  AGATGAGAAAAGTTTCT--CAGAGATCTACCAGAAGG--AACAACTCTCT  136

seq1  GACATACATTTGTTGTTTGGGGGCATTTTCAAATAGCATCAGTGG-AAAA  197
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GACATACATTTGTTGTTT-GGGGCATTTTCAAATAGCATCAGTGGAAAAA  185

seq1  TAATGCCAGGGAACACACAGCGGTTTCATGGATCAGAGGAATGCATTATT  247
      ||||| ||||||||||||||||  ||||||||||||||||||||||||||
seq2  TAATG-CAGGGAACACACAGCG--TTCATGGATCAGAGGAATGCATTATT  232

seq1  GTGAGATTAACTGAGATGCTTTTCTAGATG-AAGTAACTTGTTATGTT-A  295
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GTGAGATTAACTGAGATGCTTTTCTAGATGAAAGTAACTTGTTATGTTAA  282

seq1  AAAAAGAACAACCTTATCTGAAAACACTGCTACTCCATACAGTGGGGAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACAACCTTATCTGAAAACACTGCTACTCCATACAGTGGGGAGT  332

seq1  CAGGCATTACCAATGATAGACCACCAGTTAGACTCTACTGTGAAATCTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTACCAATGATAGACCACCAGTTAGACTCTACTGTGAAATCTAG  382

seq1  TTCGTTTCCCCTCTATTTTTCCATATTACCAAAAAGAAAGCAAACATCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTCCCCTCTATTTTTCCATATTACCAAAAAGAAAGCAAACATCTA  432

seq1  GAACAATAAAGTAGAATAATAAAGATGTTTAACTTCACACATTTTTAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAAAGTAGAATAATAAAGATGTTTAACTTCACACATTTTTAAAG  482

seq1  ATGTTTAGAGACACGGAAAAGCCACTTTTTGAAACTTCTGAACATGTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGAGACACGGAAAAGCCACTTTTTGAAACTTCTGAACATGTATG  532

seq1  CATATTTAACATTTATTTCAAGAGACTGGAGAGCCGAGGGCTTCTTAGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAACATTTATTTCAAGAGACTGGAGAGCCGAGGGCTTCTTAGTC  582

seq1  TGGGCTTTTGCCCAAAGAAGTGACTTACATTTCAGTTCTCAGCCACATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTGCCCAAAGAAGTGACTTACATTTCAGTTCTCAGCCACATTG  632

seq1  GGAGATGCCAAGAACTAATTCCTAGCGAACTACGGACAAAATGCCAGGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCCAAGAACTAATTCCTAGCGAACTACGGACAAAATGCCAGGGA  682

seq1  GCCTCTGGTGAACTCGGGTAGCCAAATCCAAGCACCAGATGTTCTCTTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGTGAACTCGGGTAGCCAAATCCAAGCACCAGATGTTCTCTTGC  732

seq1  AACTCATACCAAGTACTTAAAGAACCATTTTAAGAAATGAAAGAACAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATACCAAGTACTTAAAGAACCATTTTAAGAAATGAAAGAACAGTG  782

seq1  TTTGTGTACCAAATAGAATGGTAAAACTAACTTTTAAAAAGAAAAGATGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACCAAATAGAATGGTAAAACTAACTTTTAAAAAGAAAAGATGA  832

seq1  ATCAATTTTCAATAGCTATGGTCAGAAAAATAGCAAAGCCATATGTTTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTCAATAGCTATGGTCAGAAAAATAGCAAAGCCATATGTTTTC  882

seq1  AATGACTTATTTAAACATCCTAGAATTCATTCCTATTTTACACCCATAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTATTTAAACATCCTAGAATTCATTCCTATTTTACACCCATAAT  932

seq1  CATTATTTCATCAACTGTCGTTGCTCACTTAATGCGATAGGCTATAGATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCATCAACTGTCGTTGCTCACTTAATGCGATAGGCTATAGATT  982

seq1  TCTGCTAATCATGACCCTGAATATGTCAAACAAAATGCATTCTACACTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAATCATGACCCTGAATATGTCAAACAAAATGCATTCTACACTTA  1032

seq1  CAACTTGAATTTAGAAATGACACCTCCTTATAGGGCCTATTCAAATCCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAATTTAGAAATGACACCTCCTTATAGGGCCTATTCAAATCCCT  1082

seq1  TTAATCCCTTCTTTTAATTTTTATGTAAGAGAAAAAAGTTAAAATATGAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCTTCTTTTAATTTTTATGTAAGAGAAAAAAGTTAAAATATGAT  1132

seq1  TTTTTTTGATACCTTCAGCATCCTGGACAAGCCCTTTAATGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGATACCTTCAGCATCCTGGACAAGCCCTTTAATGAATTC  1178


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