BAC Information

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BAC

Clone NameB6Ng01-237I08
Chromosome10 (Build37)
Map Location 42,607,520 - 42,709,185
singlet/doubletdoublet
Overlap geneScml4, EG666569, C230040G06
Upstream geneSesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63
Downstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237I08.bB6Ng01-237I08.g
ACCGA048455GA048456
length1,1551,115
definitionB6Ng01-237I08.b B6Ng01-237I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,607,520 - 42,608,694)(42,708,056 - 42,709,185)
sequence
gaattcatattaccagtaaaatttatgtatttatttatatattgtttatt
aaaattacaataaaataatgtatattgaaaaaattcaattgcatgtctgt
gtaaaagacagtttctgggagttagcatttacttactcccatccacagaa
gtatcaaaaccagaatatacttgatgaggcatgccactgaaaacggtagc
actagctcatggacaaaccacagagccccaaggaagccgaaaccagcaat
acatgtaagaactgtaaatcacatattgtgaaattttcagtccattttaa
attactcatagatttgaagcatccccaataaaaattcggtaggttttttt
ttttaatttgggtgaaattttcaaaataattttgtgatgctgatggaaca
cagggccgtgggcatgccaacactgtcagaaactagttctgaaaagggaa
cacagagctgagagtgcagcctgtctcgtttcaagacttactacgagtcg
tggtaacctagagacttgggtgtcagtacaaggatacagagctatgtcga
cagaataaaatcaagagtctgaaaacagctggcatggtgtctcatacctg
taaccccagcgctactctggaatacccagtgagtatcgcgtcatccatgg
cccaacacatctcaataaaaccaaacaaataacaaccaaaacaaatcaac
aaaccagagtccagaaatagactccagttcatgggcctggcagactttga
gagaggagccgcagaacatcaacaggaaggggaaaggtagccttttgaac
tgctctgggtgactcacagccacacagtcattaactgaagatggggtaag
cagcagcctgcaagaggtgagacaaggcagcagtggaagaaagcagactg
gttcatgcttggagtatgataggtttcttagatgcagaagccaatgacca
gaaaaaaacatctaacacatctgtttgataaagacactatttagagctgg
tgtgtgtggggcccagtgagagcgtgcttgtctagcatgtacagacttag
tcagtctcagcactgaataaaagcaataaattagaccgacagatactatt
tgaagtgatagtagccaagagggtagtgagttttactatattattaacat
acata
gaattcagtatgtaagccaggctggcctttaactcacagaacaccacccc
acctagctacttattcaatttatttatttctgacaagatctctctctaca
tagacctcgctgttctggaactcacgatgatgccagtctgagctatatac
aaagcgggacttatctcagtaagctctaaccaacaaaaggcgaaacaaag
aaacagcttcaagaaaatggaaaggaaaaagagacagaaataagaaggaa
aattatgtttgtttttaaaagtctgttattaagaaagtaattttctgaca
caaactctgggtcagcttttgtgggtactccctgccctgtggcttccaga
gccctccctgcgggcctgctgtggtgcgtgcccaggaaccccttgggcgt
tccctgtctgaggacctgacctcttacttctttggaaggacaggatgaga
ttaccagagctttggatccatttttggatcaaatgaaaaccgcaggctag
tcctcagagtagccttctcctcttacagagctggctgggctgtaagggcg
gggctccgccttccctgggaccaaggcttggtcacgtgctgctcacgagg
tgcgcaaggttccaccatcctcgttaccctcgtttccgtttattttgtat
ccattgtaagcagagcttcaggctccttcggagcaaagatctctgtccgt
gatcggagagaactacacaacaggttccagttagaccctttgccactttg
ttttgtgattgttcaaacgggtggaagtacacatctccttgcctcagacc
accaacaatactctgcaccctttaataagaccatgtgctcacgatataag
aatgtttgcagtccacactgtaagaaatctagaacattttatttgctggg
tgggaacgtgcttctgaacccctggctctaatgatgctttccatagaccc
accccgaattcttacaaggtattattagtcacagccatgctggggatccc
cactcagatatataaagtaccttgagctgaatctgcccgcagatttaaac
ggcatgcaccgccgtcagatgctgagctgaaccagaatcctctatcagaa
cgcaggtgcctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42607520_42608694
seq2: B6Ng01-237I08.b_43_1197

seq1  GAATTCATATTACCAGTAAAATTTATGTATTTATTTATATATTGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTACCAGTAAAATTTATGTATTTATTTATATATTGTTTATT  50

seq1  AAAATTACAATAAAATAATGTATATTGAAAAAATTCAATTGCATGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAATAAAATAATGTATATTGAAAAAATTCAATTGCATGTCTGT  100

seq1  GTAAAAGACAGTTTCTGGGAGTTAGCATTTACTTACTCCCATCCACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGACAGTTTCTGGGAGTTAGCATTTACTTACTCCCATCCACAGAA  150

seq1  GTATCAAAACCAGAATATACTTGATGAGGCATGCCACTGAAAACGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAACCAGAATATACTTGATGAGGCATGCCACTGAAAACGGTAGC  200

seq1  ACTAGCTCATGGACAAACCACAGAGCCCCAAGGAAGCCGAAACCAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCATGGACAAACCACAGAGCCCCAAGGAAGCCGAAACCAGCAAT  250

seq1  ACATGTAAGAACTGTAAATCACATATTGTGAAATTTTCAGTCCATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGAACTGTAAATCACATATTGTGAAATTTTCAGTCCATTTTAA  300

seq1  ATTACTCATAGATTTGAAGCATCCCCAATAAAAATTCGGTAGGTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCATAGATTTGAAGCATCCCCAATAAAAATTCGGTAGGTTTTTTT  350

seq1  TTTTAATTTGGGTGAAATTTTCAAAATAATTTTGTGATGCTGATGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGGGTGAAATTTTCAAAATAATTTTGTGATGCTGATGGAACA  400

seq1  CAGGGCCGTGGGCATGCCAACACTGTCAGAAACTAGTTCTGAAAAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCGTGGGCATGCCAACACTGTCAGAAACTAGTTCTGAAAAGGGAA  450

seq1  CACAGAGCTGAGAGTGCAGCCTGTCTCGTTTCAAGACTTACTACGAGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTGAGAGTGCAGCCTGTCTCGTTTCAAGACTTACTACGAGTCG  500

seq1  TGGTAACCTAGAGACTTGGGTGTCAGTACAAGGATACAGAGCTATGTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCTAGAGACTTGGGTGTCAGTACAAGGATACAGAGCTATGTCGA  550

seq1  CAGAATAAAATCAAGAGTCTGAAAACAGCTGGCATGGTGTCTCATACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAATCAAGAGTCTGAAAACAGCTGGCATGGTGTCTCATACCTG  600

seq1  TAACCCCAGCGCTACTCTGGAATACCCAGTGAGTATCGCGTCATCCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAGCGCTACTCTGGAATACCCAGTGAGTATCGCGTCATCCATGG  650

seq1  CCCAACACATCTCAATAAAACCAAACAAATAACAACCAAAACAAATCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACATCTCAATAAAACCAAACAAATAACAACCAAAACAAATCAAC  700

seq1  AAACCAGAGTCCAGAAATAGACTCCAGTTCATGGGCCTGGCAGACTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGTCCAGAAATAGACTCCAGTTCATGGGCCTGGCAGACTTTGA  750

seq1  GAGAGGAGCCGCAGAACATCAACAGGAAGGGG-AAGGTAGCCTTTTGAAC  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGAGGAGCCGCAGAACATCAACAGGAAGGGGAAAGGTAGCCTTTTGAAC  800

seq1  TGCTCTGGGTGACTCACAGCCACACAGTCATTAACTGAAGATGGGGTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGTGACTCACAGCCACACAGTCATTAACTGAAGATGGGGTAAG  850

seq1  CAGCAGCCTGCAAGAGGTGAGACAAGGCAGCAGGTGGAAGAAAGCAGACT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGCAGCCTGCAAGAGGTGAGACAAGGCAGCA-GTGGAAGAAAGCAGACT  899

seq1  GG-TCATGCTTGGAGTATGATAGGTTTCTTAGATGCAGAAGCCAATGACC  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGCTTGGAGTATGATAGGTTTCTTAGATGCAGAAGCCAATGACC  949

seq1  AGAAAAAAACATCTAACACATCTGTTTGATAAAAGACACTATTTAGAGGC  998
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AGAAAAAAACATCTAACACATCTGTTTGAT-AAAGACACTATTTAGA-GC  997

seq1  TGGTGTGGTGTGGGGCACAGTGAGAGCGTGCTTGTCTAGCATGTACAGAC  1048
      |||||| ||||||||| |||||||||||||||||||||||||||||||| 
seq2  TGGTGT-GTGTGGGGCCCAGTGAGAGCGTGCTTGTCTAGCATGTACAGA-  1045

seq1  CTTAGGTCCAGTCCTCAGCACTGAATAAAAAGGCACATAAATAAGACAGA  1098
      |||||   |||| |||||||||||||||||  ||| |||||| |||| ||
seq2  CTTAG--TCAGT-CTCAGCACTGAATAAAA--GCA-ATAAATTAGACCGA  1089

seq1  CAAGATACTATTTGGAAAGTGAATAGTAAGCCAAAGAGGGTAGTGAAGTT  1148
      | ||||||||||||  ||||| ||||| |||| |||||||||||| ||||
seq2  C-AGATACTATTTG--AAGTG-ATAGT-AGCC-AAGAGGGTAGTG-AGTT  1132

seq1  TTAATATATATATATTAAACATACATA  1175
      ||| |||||   |||| ||||||||||
seq2  TTACTATAT---TATT-AACATACATA  1155

seq1: chr10_42708056_42709185
seq2: B6Ng01-237I08.g_63_1177 (reverse)

seq1  AAGG-GGCACCTGCTGTCTGAATAGAGGGTTCT-GCTCAGCTCAGGCATC  48
      |||| |||||||||  |||| ||||||| |||| | |||||||| |||||
seq2  AAGGAGGCACCTGCGTTCTG-ATAGAGGATTCTGGTTCAGCTCA-GCATC  48

seq1  TGACGGCGGTGCCTTGCGGTTTTAAAATCTGGCGGGCAAGAATTTCAGCT  98
      ||||||||||| | ||| ||||  |||||| |||||| |||  |||||||
seq2  TGACGGCGGTG-CATGCCGTTT--AAATCT-GCGGGC-AGA--TTCAGCT  91

seq1  CAAGGTACCTTTAATATTATTCTGAGTGGGGATCCCCAGCATGGCTGTGA  148
      |||||||| ||  |||    ||||||||||||||||||||||||||||||
seq2  CAAGGTACTTTATATA----TCTGAGTGGGGATCCCCAGCATGGCTGTGA  137

seq1  CTAATTAATTAACCTTGTAAGAATTCGGGGTGGGTCTATTGGAAAGCATC  198
      |||| ||||  ||||||||||||||||||||||||||| |||||||||||
seq2  CTAA-TAAT--ACCTTGTAAGAATTCGGGGTGGGTCTA-TGGAAAGCATC  183

seq1  ATTAGAGCCAGGGGTTCAGAAGCACGTTCCCACCCAGCAAATAAAATGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCCAGGGGTTCAGAAGCACGTTCCCACCCAGCAAATAAAATGTT  233

seq1  CTAGATTTCTTACAGTGTGGACTGCAAACATTCTTATATCGTGAGCACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTCTTACAGTGTGGACTGCAAACATTCTTATATCGTGAGCACAT  283

seq1  GGTCTTATTAAAGGGTGCAGAGTATTGTTGGTGGTCTGAGGCAAGGAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATTAAAGGGTGCAGAGTATTGTTGGTGGTCTGAGGCAAGGAGAT  333

seq1  GTGTACTTCCACCCGTTTGAACAATCACAAAACAAAGTGGCAAAGGGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTCCACCCGTTTGAACAATCACAAAACAAAGTGGCAAAGGGTCT  383

seq1  AACTGGAACCTGTTGTGTAGTTCTCTCCGATCACGGACAGAGATCTTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAACCTGTTGTGTAGTTCTCTCCGATCACGGACAGAGATCTTTGC  433

seq1  TCCGAAGGAGCCTGAAGCTCTGCTTACAATGGATACAAAATAAACGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGGAGCCTGAAGCTCTGCTTACAATGGATACAAAATAAACGGAAA  483

seq1  CGAGGGTAACGAGGATGGTGGAACCTTGCGCACCTCGTGAGCAGCACGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGTAACGAGGATGGTGGAACCTTGCGCACCTCGTGAGCAGCACGTG  533

seq1  ACCAAGCCTTGGTCCCAGGGAAGGCGGAGCCCCGCCCTTACAGCCCAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTTGGTCCCAGGGAAGGCGGAGCCCCGCCCTTACAGCCCAGCC  583

seq1  AGCTCTGTAAGAGGAGAAGGCTACTCTGAGGACTAGCCTGCGGTTTTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTAAGAGGAGAAGGCTACTCTGAGGACTAGCCTGCGGTTTTCAT  633

seq1  TTGATCCAAAAATGGATCCAAAGCTCTGGTAATCTCATCCTGTCCTTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCAAAAATGGATCCAAAGCTCTGGTAATCTCATCCTGTCCTTCCA  683

seq1  AAGAAGTAAGAGGTCAGGTCCTCAGACAGGGAACGCCCAAGGGGTTCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAAGAGGTCAGGTCCTCAGACAGGGAACGCCCAAGGGGTTCCTG  733

seq1  GGCACGCACCACAGCAGGCCCGCAGGGAGGGCTCTGGAAGCCACAGGGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCACCACAGCAGGCCCGCAGGGAGGGCTCTGGAAGCCACAGGGCA  783

seq1  GGGAGTACCCACAAAAGCTGACCCAGAGTTTGTGTCAGAAAATTACTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTACCCACAAAAGCTGACCCAGAGTTTGTGTCAGAAAATTACTTTC  833

seq1  TTAATAACAGACTTTTAAAAACAAACATAATTTTCCTTCTTATTTCTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACAGACTTTTAAAAACAAACATAATTTTCCTTCTTATTTCTGTC  883

seq1  TCTTTTTCCTTTCCATTTTCTTGAAGCTGTTTCTTTGTTTCGCCTTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTTTCCATTTTCTTGAAGCTGTTTCTTTGTTTCGCCTTTTGT  933

seq1  TGGTTAGAGCTTACTGAGATAAGTCCCGCTTTGTATATAGCTCAGACTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAGCTTACTGAGATAAGTCCCGCTTTGTATATAGCTCAGACTGG  983

seq1  CATCATCGTGAGTTCCAGAACAGCGAGGTCTATGTAGAGAGAGATCTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCGTGAGTTCCAGAACAGCGAGGTCTATGTAGAGAGAGATCTTGT  1033

seq1  CAGAAATAAATAAATTGAATAAGTAGCTAGGTGGGGTGGTGTTCTGTGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAATAAATTGAATAAGTAGCTAGGTGGGGTGGTGTTCTGTGAG  1083

seq1  TTAAAGGCCAGCCTGGCTTACATACTGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  TTAAAGGCCAGCCTGGCTTACATACTGAATTC  1115