BAC Information

Click to search

BAC

Clone NameB6Ng01-237P11
Chromosome10 (Build37)
Map Location 99,094,569 - 99,111,430
singlet/doubletdoublet
Overlap genenone
Upstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
Downstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P11.bB6Ng01-237P11.g
ACCGA048787GA048788
length1,105872
definitionB6Ng01-237P11.b B6Ng01-237P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,094,569 - 99,095,686)(99,110,561 - 99,111,430)
sequence
gaattcaattggttacctaagggcttagggccagggagacggcaaaatat
ttacgagaccgtttcttctgttaaaaagcctaagaaatataggctcattg
agctgttagtttttgcagcaaagatggatgtgcgcgactctccccatagc
tgaggatagtctaggcctttgcaaagcaactggccatattaggagagaag
ctggtggctgagaatagacaggctaatcctttaacaaaggtgatgcccga
gactctaataccctaagagaagctttttttttttttttttaaaggaagaa
gcagccaattacaagcattttacaatgtgagggtcctatgaaatgtttag
tttaaattggctgtagtttaagcagtgtctcccccccacccccactctgc
ttttaaaagaaagaagcaaactcaagaaaccctggagaaaggattaagtt
taagaaggtcccataccttctacagctaaggactgaggcaaaggaaattg
tggtttctgaggatgtcctaaggcacaaacctttgactcatcaaataaag
attcaattgtactcacaaaggtcgtgttccctcacataagagggagtggc
atatttgtaattactgccaactacaagacctgaaaaaataaaattagcga
ttactcgttagagtatacaaatagcttctaccctccagtggtcccagatt
tcaggggctaggcggcggggaggagttgaagaaatatgtcttctagaaag
ttctgggctaaataaaagagaccacataaaacaccagtgcttatgcagaa
taaacttgtttcacttctgcatatttttatttttgcagatttgtcactag
tttcgtttgtagtgcttcccatttttttctctccataccttccatgtaaa
cttgggagctccacagaaagttatgtggtcagtactataagtaagatgac
atttctgactgctgagccttctcttctgttttatcacaaatctttgtatg
atgagagttacctactagcatgtcacagtcttgagagctgtcagccaacc
taaggattgtttacaggtaataatgcttaagagtatgctgtttgcttatc
caaat
gaattccttgtctgcttagagcaaaaagggggttggcgagagtggagaaa
tataaggtaaggaataaagaatgtaataaaataaataagttggtaaacta
ttttagaaactggtaaggaaattagaccagtgtggaaaagcacacccttt
gaaggttggcaggtctgccattaattgagtggtcatgaggtacctctgag
gaggtgacatttggatggagacttaagcatatgaagaaatggcacataaa
gttctaggagatctcaaagccgaaccttctggtggaagcagtgtggattg
tttgaggaaaatggaggatactaatgatactaaaatctgtgaatgagaag
acccaagtaactgagggggagagagaacgaagaacaggaggcctggtggg
gttggaggtagctgaatgcagtataaagccagtaaggagttataaaaggt
agacgggaatgctagaattgaaaattctgagtggttctttaggccatgct
atgaggaacagaatgagagccacaggagtagaattagaccctgtttcaga
ttgtaccagaccatgggcagtggacaaggaaacatcatgacccagacaaa
gtagcactagaatggctggataggaggagaacatttcagcattcagtata
tgggggagaagatgccaatgaaaagctgatgtgcgtatctcttttttaaa
gttggagacagatgtaagcaagcagaggaacaaacaaaggaaggaagagg
gagatttgcatggctgaaatttgttaagatggaaaattgaagtgtgtctg
tgagagagaaagagacctggatagggagaagaaaggaagaagaaaggaga
ggaaatggtgggtagggaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99094569_99095686
seq2: B6Ng01-237P11.b_44_1148

seq1  GAATTCAATTGGTTACCTAAGGGCTTAGGGCCAGGGAGACGGCAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGGTTACCTAAGGGCTTAGGGCCAGGGAGACGGCAAAATAT  50

seq1  TTACGAGACCGTTTCTTCTGTTAAAAAGCCTAAGAAATATAGGCTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGACCGTTTCTTCTGTTAAAAAGCCTAAGAAATATAGGCTCATTG  100

seq1  AGCTGTTAGTTTTTGCAGCAAAGATGGATGTGCGCGACTCTCCCCATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAGTTTTTGCAGCAAAGATGGATGTGCGCGACTCTCCCCATAGC  150

seq1  TGAGGATAGTCTAGGCCTTTGCAAAGCAACTGGCCATATTAGGAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATAGTCTAGGCCTTTGCAAAGCAACTGGCCATATTAGGAGAGAAG  200

seq1  CTGGTGGCTGAGAATAGACAGGCTAATCCTTTAACAAAGGTGATGCCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCTGAGAATAGACAGGCTAATCCTTTAACAAAGGTGATGCCCGA  250

seq1  GACTCTAATACCCTAAGAGAAGCTTTTTTTTTTTTTTTTTAAAGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAATACCCTAAGAGAAGCTTTTTTTTTTTTTTTTTAAAGGAAGAA  300

seq1  GCAGCCAATTACAAGCATTTTACAATGTGAGGGTCCTATGAAATGTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAATTACAAGCATTTTACAATGTGAGGGTCCTATGAAATGTTTAG  350

seq1  TTTAAATTGGCTGTAGTTTAAGCAGTGTCTCCCCCCCACCCCCACTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGGCTGTAGTTTAAGCAGTGTCTCCCCCCCACCCCCACTCTGC  400

seq1  TTTTAAAAGAAAGAAGCAAACTCAAGAAACCCTGGAGAAAGGATTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAAAGAAGCAAACTCAAGAAACCCTGGAGAAAGGATTAAGTT  450

seq1  TAAGAAGGTCCCATACCTTCTACAGCTAAGGACTGAGGCAAAGGAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGTCCCATACCTTCTACAGCTAAGGACTGAGGCAAAGGAAATTG  500

seq1  TGGTTTCTGAGGATGTCCTAAGGCACAAACCTTTGACTCATCAAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGAGGATGTCCTAAGGCACAAACCTTTGACTCATCAAATAAAG  550

seq1  ATTCAATTGTACTCACAAAGGTCGTGTTCCCTCACATAAGAGGGAGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGTACTCACAAAGGTCGTGTTCCCTCACATAAGAGGGAGTGGC  600

seq1  ATATTTGTAATTACTGCCAACTACAAGACCTGAAAAAATAAAATTAGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAATTACTGCCAACTACAAGACCTGAAAAAATAAAATTAGCGA  650

seq1  TTACTCGTTAGAGTATACAAATAGCTTCTACCCTCCAGTGGTCCCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGTTAGAGTATACAAATAGCTTCTACCCTCCAGTGGTCCCAGATT  700

seq1  TCAGGGGCTAGGCGGCGGGGAGGAGTTGAAGAAATATGTCTTCTAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGCTAGGCGGCGGGGAGGAGTTGAAGAAATATGTCTTCTAGAAAG  750

seq1  TTCTGGGCTAAATAAAAGAGACCACATAAAACACCAGTGCTTATGCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTAAATAAAAGAGACCACATAAAACACCAGTGCTTATGCAGAA  800

seq1  TAAACTTGTTTCACTTCTGCATATTTTTATTTTTGCAGATTTGTCACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGTTTCACTTCTGCATATTTTTATTTTTGCAGATTTGTCACTAG  850

seq1  TTTCGTTTGTAGTGCTTCCCATTTTTTTCTCTCCATACCTTCCATGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTGTAGTGCTTCCCATTTTTTTCTCTCCATACCTTCCATGTAAA  900

seq1  CTTGGGAGCTCCACAGAAAGTTATGTGGTCAGTACTATAAGTAAGATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGCTCCACAGAAAGTTATGTGGTCAGTACTATAAGTAAGATGAC  950

seq1  ATTTCTGACTGCTGAGGCCTTCTTCTTCTGTTTTATCACAAATCTTTGTT  1000
      ||||||||||||||| |||||| |||||||||||||||||||||||||| 
seq2  ATTTCTGACTGCTGA-GCCTTC-TCTTCTGTTTTATCACAAATCTTTGT-  997

seq1  AATGATGAGAGTTACCTACTTAAGCAATGTCCACAGTCTTGAGAGCTGTC  1050
       |||||||||||||||||||  ||| |||| |||||||||||||||||||
seq2  -ATGATGAGAGTTACCTACT--AGC-ATGT-CACAGTCTTGAGAGCTGTC  1042

seq1  AGCAAACCCTAGGGATGGTTTACAGTTAAATTATTGCTAAAGAGTTAAAT  1100
      ||| || |||| |||| |||||||| |||  || |||| ||||||   ||
seq2  AGCCAA-CCTAAGGATTGTTTACAGGTAA--TAATGCTTAAGAGT---AT  1086

seq1  GCTGTTTGCTTAT-CAAAT  1118
      ||||||||||||| |||||
seq2  GCTGTTTGCTTATCCAAAT  1105

seq1: chr10_99110561_99111430
seq2: B6Ng01-237P11.g_65_936 (reverse)

seq1  TACCT-CCTACCCACCATTTCCTCTCCTTTCTTCTTCC-TTCTTCTCCCT  48
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCTCCCTACCCACCATTTCCTCTCCTTTCTTCTTCCTTTCTTCTCCCT  50

seq1  ATCCAGGTCTCTTTCTCTCTCACAGACACACTTCAATTTTCCATCTTAAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTCTCTTTCTCTCTCACAGACACACTTCAATTTTCCATCTTAAC  100

seq1  AAATTTCAGCCATGCAAATCTCCCTCTTCCTTCCTTTGTTTGTTCCTCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGCCATGCAAATCTCCCTCTTCCTTCCTTTGTTTGTTCCTCTG  150

seq1  CTTGCTTACATCTGTCTCCAACTTTAAAAAAGAGATACGCACATCAGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTACATCTGTCTCCAACTTTAAAAAAGAGATACGCACATCAGCTT  200

seq1  TTCATTGGCATCTTCTCCCCCATATACTGAATGCTGAAATGTTCTCCTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGCATCTTCTCCCCCATATACTGAATGCTGAAATGTTCTCCTCC  250

seq1  TATCCAGCCATTCTAGTGCTACTTTGTCTGGGTCATGATGTTTCCTTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCCATTCTAGTGCTACTTTGTCTGGGTCATGATGTTTCCTTGTC  300

seq1  CACTGCCCATGGTCTGGTACAATCTGAAACAGGGTCTAATTCTACTCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCATGGTCTGGTACAATCTGAAACAGGGTCTAATTCTACTCCTG  350

seq1  TGGCTCTCATTCTGTTCCTCATAGCATGGCCTAAAGAACCACTCAGAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCATTCTGTTCCTCATAGCATGGCCTAAAGAACCACTCAGAATT  400

seq1  TTCAATTCTAGCATTCCCGTCTACCTTTTATAACTCCTTACTGGCTTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTAGCATTCCCGTCTACCTTTTATAACTCCTTACTGGCTTTAT  450

seq1  ACTGCATTCAGCTACCTCCAACCCCACCAGGCCTCCTGTTCTTCGTTCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTCAGCTACCTCCAACCCCACCAGGCCTCCTGTTCTTCGTTCTC  500

seq1  TCTCCCCCTCAGTTACTTGGGTCTTCTCATTCACAGATTTTAGTATCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCAGTTACTTGGGTCTTCTCATTCACAGATTTTAGTATCATT  550

seq1  AGTATCCTCCATTTTCCTCAAACAATCCACACTGCTTCCACCAGAAGGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTCCATTTTCCTCAAACAATCCACACTGCTTCCACCAGAAGGTT  600

seq1  CGGCTTTGAGATCTCCTAGAACTTTATGTGCCATTTCTTCATATGCTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTGAGATCTCCTAGAACTTTATGTGCCATTTCTTCATATGCTTAA  650

seq1  GTCTCCATCCAAATGTCACCTCCTCAGAGGTACCTCATGACCACTCAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCCAAATGTCACCTCCTCAGAGGTACCTCATGACCACTCAATT  700

seq1  AATGGCAGACCTGCCAACCTTCAAAGGGTGTGCTTTTCCACACTGGTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGACCTGCCAACCTTCAAAGGGTGTGCTTTTCCACACTGGTCTA  750

seq1  ATTTCCTTACCAGTTTCTAAAATAGTTTACCAACTTATTTATTTTATTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTACCAGTTTCTAAAATAGTTTACCAACTTATTTATTTTATTAC  800

seq1  ATTCTTTATTCCTTACCTTATATTTCTCCACTCTCGCCAACCCCCTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATTCCTTACCTTATATTTCTCCACTCTCGCCAACCCCCTTTTT  850

seq1  GCTCTAAGCAGACAAGGAATTC  870
      ||||||||||||||||||||||
seq2  GCTCTAAGCAGACAAGGAATTC  872