BAC Information

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BAC

Clone NameB6Ng01-238A19
Chromosome10 (Build37)
Map Location 50,556,265 - 50,691,480
singlet/doubletdoublet
Overlap geneAscc3, Sim1
Upstream geneLOC629652
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A19.bB6Ng01-238A19.g
ACCGA048844GA048845
length1,0961,011
definitionB6Ng01-238A19.b B6Ng01-238A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,556,265 - 50,557,365)(50,690,926 - 50,691,480)
sequence
gaattctgcctaatttttctcttttctggaactcacattgaacagtactt
cctgtcctgcagggataaaagctagcctccttttgtgtctccaaccaatt
ccttgtagggagccagcttctgctagaaatgaattagatttcttttttta
tctgcttcctaaatgaaatcttccccccaccttcctcaaatagtattcat
agcatcaagttgccatcttcaggtccatcataatggcttcaacagttgtt
ttttaaacatcataatcacctgcaatccacgctcctgcacatgaatgatg
tcaaattgcctggcccagaagctgattgatctcattcgtatccctgtctc
gcagtgtctttatcagtcaacttgactgagcatttctggttttgtaatca
ggattttttttctccccttcctgttctcttagtttagtctctggcccctt
atgattgtacctcaactggccaattcaacactagtgtcagtgtgctagtg
tcttataccatccttggtaactatcaacatctgaattctctgccttcagg
tcaaaattacccattattgcaagacataatatccaaatactgttgaatcc
acaacagagtaatgctgttgaagacagggctattacaggatttttttcta
taattgattctactcacttcttcaaaatattttcctgttcccttgcattt
tcccccctagcaagaagcattaccttcaatctgcagagatttcctttctt
ttcctctgatttgctttgtgagatcttctatgatcaagaaaagtcctgct
tttctgaaacccttacacacacttcatcaatagtaaccctcattccctga
ctgtcagcaggatggtcggtctagcttgtttgtttactgaacatgacctt
agaaacagtagagtctaccagaaaagttagaaattgaatgttataaaaac
aaatggatagtacatctgtataacagaaggtagaactcctaaaaaaggga
cagatcaaattcagttattcagatgtagaaaaatgagccttgataatact
tatttccagaatcttggcagttagaacaggtctaacatggctgtgt

gaattctagacaatcaatttatgactgggctatatctaaaatataactct
aattttaaagcccaaaactagaaacaaaccagtaatccttcagactgtga
atggctaagtaaaatatagtgtatttctaccatgaaacattattcaaaaa
taaaagggaataaagtactgatatatacagcatgcatggatctccaaaga
gttatgcttggagcagagagagccaaccttagggagttgtataattctaa
ttacataccattcttaggttatgattttattttctcagaacttgaaattg
aattcagggtttgatgtatgccaggagctatatctctagccccctttgac
tcttttcttaaaagacaagttctcatcatgttgcctggcttggtcttgag
ctcactttctagacagtgtagtcctcctgtttcagccttctgagcagctg
aggtgacagagctgagataccagttacagccatataacacgcttgatggc
aagagtaaaaatagatacaaacatctataggcacttgctagggtttagga
acaaaactgtagacaaatcactgtgactatgaaaaggaaatgtgtaaaat
tcctgtatagttagatgttctgtgccttggcaataataatgtagtaatag
ttatgataacatactacagtttagtgagatgttaccattataaatattgt
gacaattccgctaaaatagcacatatatttacaattttatcaattacatg
cttcaatttcatataaacttaaacttgtatcaaaattaaattttgattaa
aatagctataaaataaatcagaaaaatataaataaatataccacacagca
tctgtaatgtaaaaataatatgacagtgttgaataatatatcaatgatga
cactaagtttaaatcagctttcattacaaataagaagaaacaggattttt
aaactaatttcacagaacgaagcatcaggtctatgatgatgatagacata
tttcatatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50556265_50557365
seq2: B6Ng01-238A19.b_45_1140

seq1  GAATTCTGCCTAATTTTTCTCTTTTCTGGAACTCACATTGAACAGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTAATTTTTCTCTTTTCTGGAACTCACATTGAACAGTACTT  50

seq1  CCTGTCCTGCAGGGATAAAAGCTAGCCTCCTTTTGTGTCTCCAACCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGCAGGGATAAAAGCTAGCCTCCTTTTGTGTCTCCAACCAATT  100

seq1  CCTTGTAGGGAGCCAGCTTCTGCTAGAAATGAATTAGATTTCTTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGGGAGCCAGCTTCTGCTAGAAATGAATTAGATTTCTTTTTTTA  150

seq1  TCTGCTTCCTAAATGAAATCTTCCCCCCACCTTCCTCAAATAGTATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTAAATGAAATCTTCCCCCCACCTTCCTCAAATAGTATTCAT  200

seq1  AGCATCAAGTTGCCATCTTCAGGTCCATCATAATGGCTTCAACAGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAGTTGCCATCTTCAGGTCCATCATAATGGCTTCAACAGTTGTT  250

seq1  TTTTAAACATCATAATCACCTGCAATCCACGCTCCTGCACATGAATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATCATAATCACCTGCAATCCACGCTCCTGCACATGAATGATG  300

seq1  TCAAATTGCCTGGCCCAGAAGCTGATTGATCTCATTCGTATCCCTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGCCTGGCCCAGAAGCTGATTGATCTCATTCGTATCCCTGTCTC  350

seq1  GCAGTGTCTTTATCAGTCAACTTGACTGAGCATTTCTGGTTTTGTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTTTATCAGTCAACTTGACTGAGCATTTCTGGTTTTGTAATCA  400

seq1  GGATTTTTTTTCTCCCCTTCCTGTTCTCTTAGTTTAGTCTCTGGCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTCTCCCCTTCCTGTTCTCTTAGTTTAGTCTCTGGCCCCTT  450

seq1  ATGATTGTACCTCAACTGGCCAATTCAACACTAGTGTCAGTGTGCTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGTACCTCAACTGGCCAATTCAACACTAGTGTCAGTGTGCTAGTG  500

seq1  TCTTATACCATCCTTGGTAACTATCAACATCTGAATTCTCTGCCTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACCATCCTTGGTAACTATCAACATCTGAATTCTCTGCCTTCAGG  550

seq1  TCAAAATTACCCATTATTGCAAGACATAATATCCAAATACTGTTGAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTACCCATTATTGCAAGACATAATATCCAAATACTGTTGAATCC  600

seq1  ACAACAGAGTAATGCTGTTGAAGACAGGGCTATTACAGGATTTTTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGTAATGCTGTTGAAGACAGGGCTATTACAGGATTTTTTTCTA  650

seq1  TAATTGATTCTACTCACTTCTTCAAAATATTTTCCTGTTCCCTTGCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTCTACTCACTTCTTCAAAATATTTTCCTGTTCCCTTGCATTT  700

seq1  TCCCCCCTAGCAAGAAGCATTACCTTCAATCTGCAGAGATTTCCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTAGCAAGAAGCATTACCTTCAATCTGCAGAGATTTCCTTTCTT  750

seq1  TTCCTCTGATTTGCTTTGTGAGATCTTCTATGATCAAGAAAAGTCCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGATTTGCTTTGTGAGATCTTCTATGATCAAGAAAAGTCCTGCT  800

seq1  TTTCTGAAACCCTTACACACACTTCATCAATAGTAACCCTCATTCCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAACCCTTACACACACTTCATCAATAGTAACCCTCATTCCCTGA  850

seq1  CTGTCAGCAGGATGGTCGGTCTAGCTTGTTTGTTTACTGAACATGACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCAGGATGGTCGGTCTAGCTTGTTTGTTTACTGAACATGACCTT  900

seq1  AGAAACAGTAGAGTCTACCAGAAAAGTTAGAAATTGAATGTTATAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTAGAGTCTACCAGAAAAGTTAGAAATTGAATGTTATAAAAAC  950

seq1  AAATGGATAGTACATCTGTAT-ACAGAAGGTAGAACTCCTAAAAAAGGGA  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAATGGATAGTACATCTGTATAACAGAAGGTAGAACTCCTAAAAAAGGGA  1000

seq1  CAGATCAAATTCAGTTATTCAGATGTAG-AAAATGAGCCTTGATAATTAA  1048
      |||||||||||||||||||||||||||| ||||||||||||||||||  |
seq2  CAGATCAAATTCAGTTATTCAGATGTAGAAAAATGAGCCTTGATAAT--A  1048

seq1  CTAATTTTCCCAGAATCTT-GCAGTTAGAACAAGTCTAAACCATTGGGCT  1097
      || ||||  |||||||||| |||||||||||| ||||||  |||  ||||
seq2  CTTATTT--CCAGAATCTTGGCAGTTAGAACAGGTCTAA--CAT--GGCT  1092

seq1  GTGT  1101
      ||||
seq2  GTGT  1096


seq1: chr10_50690926_50691480
seq2: B6Ng01-238A19.g_66_620 (reverse)

seq1  TTTGTTCCTAAACCCTAGCAAGTGCCTATAGATGTTTGTATCTATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTAAACCCTAGCAAGTGCCTATAGATGTTTGTATCTATTTTTA  50

seq1  CTCTTGCCATCAAGCGTGTTATATGGCTGTAACTGGTATCTCAGCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCATCAAGCGTGTTATATGGCTGTAACTGGTATCTCAGCTCTGT  100

seq1  CACCTCAGCTGCTCAGAAGGCTGAAACAGGAGGACTACACTGTCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGCTGCTCAGAAGGCTGAAACAGGAGGACTACACTGTCTAGAAA  150

seq1  GTGAGCTCAAGACCAAGCCAGGCAACATGATGAGAACTTGTCTTTTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCAAGACCAAGCCAGGCAACATGATGAGAACTTGTCTTTTAAGA  200

seq1  AAAGAGTCAAAGGGGGCTAGAGATATAGCTCCTGGCATACATCAAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAAAGGGGGCTAGAGATATAGCTCCTGGCATACATCAAACCCT  250

seq1  GAATTCAATTTCAAGTTCTGAGAAAATAAAATCATAACCTAAGAATGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCAAGTTCTGAGAAAATAAAATCATAACCTAAGAATGGTA  300

seq1  TGTAATTAGAATTATACAACTCCCTAAGGTTGGCTCTCTCTGCTCCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGAATTATACAACTCCCTAAGGTTGGCTCTCTCTGCTCCAAGC  350

seq1  ATAACTCTTTGGAGATCCATGCATGCTGTATATATCAGTACTTTATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTTTGGAGATCCATGCATGCTGTATATATCAGTACTTTATTCCC  400

seq1  TTTTATTTTTGAATAATGTTTCATGGTAGAAATACACTATATTTTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGAATAATGTTTCATGGTAGAAATACACTATATTTTACTTA  450

seq1  GCCATTCACAGTCTGAAGGATTACTGGTTTGTTTCTAGTTTTGGGCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCACAGTCTGAAGGATTACTGGTTTGTTTCTAGTTTTGGGCTTTA  500

seq1  AAATTAGAGTTATATTTTAGATATAGCCCAGTCATAAATTGATTGTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGTTATATTTTAGATATAGCCCAGTCATAAATTGATTGTCTAG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555


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