BAC Information

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BAC

Clone NameB6Ng01-238B15
Chromosome10 (Build37)
Map Location 99,565,061 - 99,740,076
singlet/doubletdoublet
Overlap geneLOC100043208, LOC100043211
Upstream geneWdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl
Downstream geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238B15.bB6Ng01-238B15.g
ACCGA048884GA048885
length1,2381,127
definitionB6Ng01-238B15.b B6Ng01-238B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,738,840 - 99,740,076)(99,565,061 - 99,565,885)
sequence
gaattctgttgaagacttaacaaaggcagaggttaaattattacttaaaa
tatcccggattatagaaaaaggaaaaaagaaattaagtctctataacaac
aacaaaaaacaactacaggtcaaattcagtatcactcaaaacctctaaca
cattagcaaacacagttcaccagcctatctcagaaacagtacagtattgt
ggaggagaattaattttaggaacaaagggtttaattttaacaattctatt
agcatcatttccttaataatagtgagaataaaaaactttattcattttcc
ttcacgtcaaaaaggcatttgatacatctgccaataattactgccctgat
cttactatgacaatcctagtaggataattggcaaatccaccagagtggtc
tgaggaagattcattgcagtgatatagctgacatgaaggtcttagctacc
agcccaatcccgaacacatctcttaaatagtatattggattcttaatgtc
ttagtcagtgttctaatactgggaagatacaacatgaccattgcagctct
tctaaagaaaaacacttaactgcagcttgcttacactttcagaggtttag
tctactgtcatggcaaggagcatggtggcatgcaagctctcatgctggaa
aagtaccttgagagtttcacacctggcttcacagacatcaggaaaaaaat
gacactgggcctgcattcaacttttaaaatcccaaagcccaactacagtg
acctacttctcccaagaagaccacacctattccaacaagatcccacctcc
tgatccctctcaagtagcaccactccctaatgcccaagcattcaaatagc
tgagcctatgggagtcactcctattcaaatcaacacatctactgtgctta
tggcagccaagaaaaagtgggagtgcatgaaccttgagatctcacaatga
agtgtggtctcattggagccttacacagtaaacatcatttgagtatttta
cttcctataatagaaacattgttatcttacctccaaaccctctagatatg
ctctgcacttcttgcaagacgtgcaatatttcttatctaccctactgttt
ctatcctattgcacacttacaatattgaaaccttaaaacacgaacaagtt
cttgtttagaggaaaccctcttccatgctggtggacgtgcagctgggtaa
aaccacttggaaaatctacatttcgtgtgggtggtttc
gaattcatttgaattggaaaggagagtgtttgtctgaggttgccactgaa
aggtttccctgcatgcaagcaaaaagactgccaagacaactctcttgcct
ccttgagtcacctacacacagagtggtcactacagctgtgtggaaggagg
taagaccacatctaaaaagggcagcaaaacttggtagtgtcatcaagtgg
tgctggtttggcaggaagccaattggcaaaaagcctgacatctttatgtc
ctccaccaaagttccagaatgttcctggtaccacacggtacatggcagtc
agtatcaggcacatggagccttcagattttgtgtttgccttactgagtct
ggtattgcttggaagcccaacctttgcttgtgaaacagtcacttcttctt
gggatgggaaatttcactgttttgttatgttggaaacatgtaagttgtgt
cttggttttataagggctcataattaagactgtcttgaatcttagattag
actttggactttgagttatcgaacactattggtgctgttaagattctggg
gggggatttttgaggaatggactaaacacattgtcaatatgactagattt
aaaatcaactaggagatataactcgggatgtgtctacagaggtgttttca
ggaagatctaactaagctgagaagaccaactcggtcttagttcttggtct
tgatcttggtcttggtgggcagcaccattccatgggctgcaggcccagag
ctgagaagagaaattgagtagttgcattcttagcactgactaatggcaat
gtaacttaattcagacatcatcttacagctttgatgacaccacacttata
caccttcccatttccttttctactaataataacctaaattggctgttaac
agttcacaactatttctcattgcaaaacccaaaggagcaatatggctcac
aattcatttttatcttatcacataatgtttaagggagctaataatgctaa
tatttctttctgtgaacagaattaacagagagaagactatgaattccgtt
atttccaacaacatattttcaaagtatggtaaataatcctcttatactga
aacaaacgtttccactaagtaggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99738840_99740076
seq2: B6Ng01-238B15.b_47_1284 (reverse)

seq1  GAAACCACC--------AGATTGATTTCCAAAGTGGTTTTA-CCAGCTTG  41
      |||||||||        |  | ||||| | ||||||||||| ||||| ||
seq2  GAAACCACCCACACGAAATGTAGATTTTCCAAGTGGTTTTACCCAGC-TG  49

seq1  CAGTCCCACCAGCAATGGAAGAGTG-TTCCTCTTAACAAGAACTGTTTGT  90
      ||   |||||||| ||||||||| | ||||||| |||||||||   ||||
seq2  CACGTCCACCAGC-ATGGAAGAGGGTTTCCTCTAAACAAGAAC---TTGT  95

seq1  TCGTTTGTTTTA--GGTTCAATATGTTAGTTGTTGGCATA-GATAGAAAC  137
      |||  |||||||  | ||||||||  ||  || ||  ||| |||||||||
seq2  TCG--TGTTTTAAGGTTTCAATATTGTAAGTG-TGCAATAGGATAGAAAC  142

seq1  AGTAGGGTAGATAAGAAATATTGGCACGTCCTTGC-AGAAGTGCAGAGCA  186
      |||||||||||||||||||||| |||||| ||||| ||||||||||||||
seq2  AGTAGGGTAGATAAGAAATATT-GCACGT-CTTGCAAGAAGTGCAGAGCA  190

seq1  TATCTAGAGGGTTTGGAGGTAAGATAACATTGTTTCTATTATAGGAAGTA  236
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATCTAGAGGGTTTGGAGGTAAGATAACAATGTTTCTATTATAGGAAGTA  240

seq1  AAATTACTCAAATGATGTTTACTGTGTAAGGCTCCAATGGAGACCACACT  286
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAA-TACTCAAATGATGTTTACTGTGTAAGGCTCCAAT-GAGACCACACT  288

seq1  TCATTGTGAGATCTCAAGGTTTCATGCACTCCCACTTTTTCTTGGCTGCC  336
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATTGTGAGATCTCAAGG-TTCATGCACTCCCACTTTTTCTTGGCTGCC  337

seq1  ATAAGCACAGTAGATGTGTTGATTTGAATAGGAGTGACTCCCATAGGCTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACAGTAGATGTGTTGATTTGAATAGGAGTGACTCCCATAGGCTC  387

seq1  AGCTATTTGAATGCTTGGGCATTAGGGAGTGGTGCTACTTGAGAGGGATC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTGAATGCTTGGGCATTAGGGAGTGGTGCTACTTGAGAGGGATC  437

seq1  AGGAGGTGGGATCTTGTTGGAATAGGTGTGGTCTTCTTGGGAGAAGTAGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGGATCTTGTTGGAATAGGTGTGGTCTTCTTGGGAGAAGTAGG  487

seq1  TCACTGTAGTTGGGCTTTGGGATTTTAAAAGTTGAATGCAGGCCCAGTGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAGTTGGGCTTTGGGATTTTAAAAGTTGAATGCAGGCCCAGTGT  537

seq1  CATTTTTTTCCTGATGTCTGTGAAGCCAGGTGTGAAACTCTCAAGGTACT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCCTGATGTCTGTGAAGCCAGGTGTGAAACTCTCAAGGTACT  587

seq1  TTTCCAGCATGAGAGCTTGCATGCCACCATGCTCCTTGCCATGACAGTAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCATGAGAGCTTGCATGCCACCATGCTCCTTGCCATGACAGTAG  637

seq1  ACTAAACCTCTGAAAGTGTAAGCAAGCTGCAGTTAAGTGTTTTTCTTTAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCTCTGAAAGTGTAAGCAAGCTGCAGTTAAGTGTTTTTCTTTAG  687

seq1  AAGAGCTGCAATGGTCATGTTGTATCTTCCCAGTATTAGAACACTGACTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGCAATGGTCATGTTGTATCTTCCCAGTATTAGAACACTGACTA  737

seq1  AGACATTAAGAATCCAATATACTATTTAAGAGATGTGTTCGGGATTGGGC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAAGAATCCAATATACTATTTAAGAGATGTGTTCGGGATTGGGC  787

seq1  TGGTAGCTAAGACCTTCATGTCAGCTATATCACTGCAATGAATCTTCCTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTAAGACCTTCATGTCAGCTATATCACTGCAATGAATCTTCCTC  837

seq1  AGACCACTCTGGTGGATTTGCCAATTATCCTACTAGGATTGTCATAGTAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTCTGGTGGATTTGCCAATTATCCTACTAGGATTGTCATAGTAA  887

seq1  GATCAGGGCAGTAATTATTGGCAGATGTATCAAATGCCTTTTTGACGTGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGCAGTAATTATTGGCAGATGTATCAAATGCCTTTTTGACGTGA  937

seq1  AGGAAAATGAATAAAGTTTTTTATTCTCACTATTATTAAGGAAATGATGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGAATAAAGTTTTTTATTCTCACTATTATTAAGGAAATGATGC  987

seq1  TAATAGAATTGTTAAAATTAAACCCTTTGTTCCTAAAATTAATTCTCCTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATTGTTAAAATTAAACCCTTTGTTCCTAAAATTAATTCTCCTC  1037

seq1  CACAATACTGTACTGTTTCTGAGATAGGCTGGTGAACTGTGTTTGCTAAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACTGTACTGTTTCTGAGATAGGCTGGTGAACTGTGTTTGCTAAT  1087

seq1  GTGTTAGAGGTTTTGAGTGATACTGAATTTGACCTGTAGTTGTTTTTTGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAGGTTTTGAGTGATACTGAATTTGACCTGTAGTTGTTTTTTGT  1137

seq1  TGTTGTTATAGAGACTTAATTTCTTTTTTCCTTTTTCTATAATCCGGGAT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATAGAGACTTAATTTCTTTTTTCCTTTTTCTATAATCCGGGAT  1187

seq1  ATTTTAAGTAATAATTTAACCTCTGCCTTTGTTAAGTCTTCAACAGAATT  1236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTAATAATTTAACCTCTGCCTTTGTTAAGTCTTCAACAGAATT  1237

seq1  C  1237
      |
seq2  C  1238

seq1: chr10_99565061_99565885
seq2: B6Ng01-238B15.g_349_1194

seq1  CACACGGTACATGGCAGTCAGTATCAGGCACATGGAGCCTTCAGATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGTACATGGCAGTCAGTATCAGGCACATGGAGCCTTCAGATTTTG  50

seq1  TGTTTGCCTTACTGAGTCTGGTATTGCTTGGAAGCCCAACCTTTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTACTGAGTCTGGTATTGCTTGGAAGCCCAACCTTTGCTTGT  100

seq1  GAAACAGTCACTTCTTCTTGGGATGGGAAATTTCACTGTTTTGTTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCACTTCTTCTTGGGATGGGAAATTTCACTGTTTTGTTATGTT  150

seq1  GGAAACATGTAAGTTGTGTCTTGGTTTTATAAGGGCTCATAATTAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTAAGTTGTGTCTTGGTTTTATAAGGGCTCATAATTAAGACT  200

seq1  GTCTTGAATCTTAGATTAGACTTTGGACTTTGAGTTATCGAACACTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATCTTAGATTAGACTTTGGACTTTGAGTTATCGAACACTATTG  250

seq1  GTGCTGTTAAGATTCTGGGGGGGGATTTTTGAGGAATGGACTAAACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTAAGATTCTGGGGGGGGATTTTTGAGGAATGGACTAAACACAT  300

seq1  TGTCAATATGACTAGATTTAAAATCAACTAGGAGATATAACTCGGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATATGACTAGATTTAAAATCAACTAGGAGATATAACTCGGGATGT  350

seq1  GTCTACAGAGGTGTTTTCAGGAAGATCTAACTAAGCTGAGAAGACCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGGTGTTTTCAGGAAGATCTAACTAAGCTGAGAAGACCAACT  400

seq1  CGGTCTTAGTTCTTGGTCTTGATCTTGGTCTTGGTGGGCAGCACCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTAGTTCTTGGTCTTGATCTTGGTCTTGGTGGGCAGCACCATTCC  450

seq1  ATGGGCTGCAGGCCCAGAGCTGAGAAGAGAAATTGAGTAGTTGCATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCAGGCCCAGAGCTGAGAAGAGAAATTGAGTAGTTGCATTCTT  500

seq1  AGCACTGACTAATGGCAAAGGTAAC-TAATTCAGACATCATCTTACAGC-  548
      |||||||||||||||| || ||||| ||||||||||||||||||||||| 
seq2  AGCACTGACTAATGGC-AATGTAACTTAATTCAGACATCATCTTACAGCT  549

seq1  TTGATGACACCACACTTATACACC-TCCCATTTCC-TTTCTACTAATAAT  596
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TTGATGACACCACACTTATACACCTTCCCATTTCCTTTTCTACTAATAAT  599

seq1  AACCTAAA-TGGCTG-TAACAG-TCAC-ACTA-TTCTCATTGCCAAAACC  641
      |||||||| |||||| |||||| |||| |||| ||||||||| |||||||
seq2  AACCTAAATTGGCTGTTAACAGTTCACAACTATTTCTCATTG-CAAAACC  648

seq1  CAAA-GAGCAATATGGCTCACCAATCA-TTTTATC-TATCACATAATGTT  688
      |||| |||||||||||||||| | ||| ||||||| ||||||||||||||
seq2  CAAAGGAGCAATATGGCTCACAATTCATTTTTATCTTATCACATAATGTT  698

seq1  TAAGGGAGCTAAT-ATGCTAATATT--CTTCTGTG-ACAGAAATAACAAG  734
      ||||||||||||| |||||||||||   ||||||| |||||| |||| ||
seq2  TAAGGGAGCTAATAATGCTAATATTTCTTTCTGTGAACAGAATTAAC-AG  747

seq1  AGAGAAGACCATGAA-TCCG-TATT--CCACCACATA-TTTCAAAGT-TA  778
      ||||||||| ||||| |||| ||||  | || ||||| ||||||||| | 
seq2  AGAGAAGACTATGAATTCCGTTATTTCCAACAACATATTTTCAAAGTATG  797

seq1  GTAAAATAACCTCTATAACTGAAACAAACGTT--CACTAAGTAAGTTTC  825
      |||||  | |||||   |||||||||||||||  ||||||||| |||||
seq2  GTAAATAATCCTCTTATACTGAAACAAACGTTTCCACTAAGTAGGTTTC  846