BAC Information

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BAC

Clone NameB6Ng01-238C11
Chromosome10 (Build37)
Map Location 22,126,836 - 22,213,513
singlet/doubletdoublet
Overlap geneLOC667299, LOC667303, LOC100040072
Upstream geneLOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d
Downstream geneLOC100040078, Slc2a12, Tbpl1, Tcf21, Eya4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238C11.bB6Ng01-238C11.g
ACCGA048924GA048925
length1,1301,050
definitionB6Ng01-238C11.b B6Ng01-238C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,126,836 - 22,127,955)(22,212,459 - 22,213,513)
sequence
gaattccctagaacagcaatgtcctttctgcaatttccttactagaaggc
tcttaccgctggctctggatgtctaactgctgacttgtatctttaaatgg
atctctctctctttagacgtttgctaactttcttcaggtgattggttttc
aggtgttcaggttcctgcgaatgggtgctgtctgtattatacaatgtgta
cttgaaattttcataatattttcagagtattctcttgtaattatattact
ttacaaggtttttggggcttctctttgatttgtgattacacagttctagt
atattttgtgttctttagtcagactatacaattgtctatgaagttcagga
aacttttgaaaaaaatttgtttccattgaatttctttatcatttctattc
catatttaattcttgctgagacctattctaactttcttctttacatttgg
ttgcatatctttatttactcacgtcctttttgttttatttcgcatatgtt
gattagggatgtgttgttggatgggcttgatggattatgcctttaattcc
agcattctggattcaaagatagacagatctctgaattagtgggaacctct
ctgatctacacagagagttccagcacaggcaggtgtatacatagaaacct
tgtcttgaaaagatgaaacataaagaaaggaagaaatgtgtggttggggt
caaagtgcagagaatgtgtgtctgcagaatacaaatggggtatctatgtc
atatgccctgcccccgagacttaggagccatcatgaagaaagaacgtcct
atccaggttttacagtagtaagcttttccttcattagcttaaagatttat
tattattttatatgttggtcaacttcaatgtttatttttattatcagttt
atgggtgcacacatatatgctcaccatgtcatgcaaagctgcaaaagcca
gagaagacatcctgagcccctagaactggagttgagacttattgtgagcc
acatgttcgtgctgagaataaacccaaggtcctcttggagaacacccagt
ggattcttaacccgtctacccatctcttacagttgataaatattcatttt
tttaagaaaaaaacaaaatggtttaatttg
gaattccatcaccctgggcccaaggggagttctaacatctcataccacaa
catgtatgaccttattagttaatggagtgatttcatgcatagttaaaatc
atgccacgtagggcagacttctaactggcacacaggagataggtatatat
gcaggaaggctggagttttgctattacaagtccaggagtttccagatgtg
gggcaaattgttcctcggagaccagagcaaacctggcctgtcatatttgg
attcagaagcctggccccaagatctgtgagaccacgtttgtttccataaa
ccactcagcttgcggtacaactttctcacttctctagcagaatccaaagg
tatggcacagctgtggtctatagagaaatatttctaatgagtattgtatc
aagcgataaagttgtatgctctaacacagggacatcggtggccgtgagag
aacaggttggtgactttctatatataaacgttgaggagaggaagagagtg
agtgtgtaggattgtgaaacctcaaggtattagctggaaatcacatattc
ttattcatcaagtaattttgagtatgctttgaagcaaacactgtcccttc
tttgatgacgtagtgctgagtcagttacctgctgtggtagatctcctgag
acggacccatttccctaggacatggaaaaaaagtccttctcttacatggg
gctatggggacggagctttccaatgacataaggacagtgagccaaggaaa
ttataaccacctgcaaagcttaagtcgggtttagttttgccttagtttct
aaaagtagaggcatcaatgttaattatagtgtctgacgttgttttgtttg
cggggcggggggcattgcttgttgttggttttgtttggttttttgagaca
ggcttttctctgtattaacagagcccttgttttgtagaccatgctggcct
cgaactcacagaggattcacctgcctttgcctcaaagttctgggaatcaa
atgcatgggcactatctggattatctgtgcttttaaaaatttgttcctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_22126836_22127955
seq2: B6Ng01-238C11.b_39_1168

seq1  GAATTCCCTAGAACAGCAATGTCCTTTCTGCAATTTCCTTACTAGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGAACAGCAATGTCCTTTCTGCAATTTCCTTACTAGAAGGC  50

seq1  TCTTACCGCTGGCTCTGGATGTCTAACTGCTGACTTGTATCTTTAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCGCTGGCTCTGGATGTCTAACTGCTGACTTGTATCTTTAAATGG  100

seq1  ATCTCTCTCTCTTTAGACGTTTGCTAACTTTCTTCAGGTGATTGGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCTCTTTAGACGTTTGCTAACTTTCTTCAGGTGATTGGTTTTC  150

seq1  AGGTGTTCAGGTTCCTGCGAATGGGTGCTGTCTGTATTATACAATGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCAGGTTCCTGCGAATGGGTGCTGTCTGTATTATACAATGTGTA  200

seq1  CTTGAAATTTTCATAATATTTTCAGAGTATTCTCTTGTAATTATATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTTTCATAATATTTTCAGAGTATTCTCTTGTAATTATATTACT  250

seq1  TTACAAGGTTTTTGGGGCTTCTCTTTGATTTGTGATTACACAGTTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGTTTTTGGGGCTTCTCTTTGATTTGTGATTACACAGTTCTAGT  300

seq1  ATATTTTGTGTTCTTTAGTCAGACTATACAATTGTCTATGAAGTTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTGTTCTTTAGTCAGACTATACAATTGTCTATGAAGTTCAGGA  350

seq1  AACTTTTGAAAAAAATTTGTTTCCATTGAATTTCTTTATCATTTCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAAAAAAATTTGTTTCCATTGAATTTCTTTATCATTTCTATTC  400

seq1  CATATTTAATTCTTGCTGAGACCTATTCTAACTTTCTTCTTTACATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAATTCTTGCTGAGACCTATTCTAACTTTCTTCTTTACATTTGG  450

seq1  TTGCATATCTTTATTTACTCACGTCCTTTTTGTTTTATTTCGCATATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATCTTTATTTACTCACGTCCTTTTTGTTTTATTTCGCATATGTT  500

seq1  GATTAGGGATGTGTTGTTGGATGGGCTTGATGGATTATGCCTTTAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGATGTGTTGTTGGATGGGCTTGATGGATTATGCCTTTAATTCC  550

seq1  AGCATTCTGGATTCAAAGATAGACAGATCTCTGAATTAGTGGGAACCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGGATTCAAAGATAGACAGATCTCTGAATTAGTGGGAACCTCT  600

seq1  CTGATCTACACAGAGAGTTCCAGCACAGGCAGGTGTATACATAGAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTACACAGAGAGTTCCAGCACAGGCAGGTGTATACATAGAAACCT  650

seq1  TGTCTTGAAAAGATGAAACATAAAGAAAGGAAGAAATGTGTGGTTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAGATGAAACATAAAGAAAGGAAGAAATGTGTGGTTGGGGT  700

seq1  CAAAGTGCAGAGAATGTGTGTCTGCAGAATACAAATGGGGTATCTATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCAGAGAATGTGTGTCTGCAGAATACAAATGGGGTATCTATGTC  750

seq1  ATATGCCCTGCCCCCGAGACTTAGGAGCCATCATGAAGAAGGAACGTCCT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATGCCCTGCCCCCGAGACTTAGGAGCCATCATGAAGAAAGAACGTCCT  800

seq1  ATCCAGGTTTTACAGTAGTAAGC-TTTCCTTCATTAGCTTAAAGATTTAT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCCAGGTTTTACAGTAGTAAGCTTTTCCTTCATTAGCTTAAAGATTTAT  850

seq1  TATTATTTTATATGTT-GTCAACTTCAATGTTTATTTTTATTATCAGTTT  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATTATTTTATATGTTGGTCAACTTCAATGTTTATTTTTATTATCAGTTT  900

seq1  AT-GGTGCACACATATATGCTCACCATGTCATGCAAAGCTGGCAAAAGCC  947
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGGGTGCACACATATATGCTCACCATGTCATGCAAAGCT-GCAAAAGCC  949

seq1  AGAG-AGACAT-CTGAGCCCCTAGAACTGGAGTTGAAGACATA-TGTGAG  994
      |||| |||||| ||||||||||||||||||||||| |||| || ||||||
seq2  AGAGAAGACATCCTGAGCCCCTAGAACTGGAGTTG-AGACTTATTGTGAG  998

seq1  CCACAATGTCAGTGCTGAGAATTAAACCCAGGTCCTCTGGAAGAACACCC  1044
      |||| ||||  ||||||||||| || || ||||||||| | |||||||||
seq2  CCAC-ATGTTCGTGCTGAGAATAAACCCAAGGTCCTCTTGGAGAACACCC  1047

seq1  AGTG--ATCTTAACC--ACTACACCATCTC-TACAGTTCATAAAATATCA  1089
      ||||   ||||||||   |||| ||||||| ||||||| |||||   |||
seq2  AGTGGATTCTTAACCCGTCTAC-CCATCTCTTACAGTTGATAAATATTCA  1096

seq1  -TTTTTTAAG-AAAAAACAAAAT-GTTTAATTGG  1120
       ||||||||| |||||||||||| |||||||| |
seq2  TTTTTTTAAGAAAAAAACAAAATGGTTTAATTTG  1130

seq1: chr10_22212459_22213513
seq2: B6Ng01-238C11.g_67_1116 (reverse)

seq1  TCAGGAACAAATTTTTTAAAAAGCACAGATATACCAGGATTAGTGGCCCA  50
      ||||||||||||||||  |||||||||||||  ||||   |||| |||||
seq2  TCAGGAACAAATTTTT--AAAAGCACAGATAATCCAG--ATAGT-GCCCA  45

seq1  TGCATTTGA-TCCCAGAACTTTGGAGGCAAAGGCAGGTGGAT-CTCTGTG  98
      ||||||||| |||||||||||| |||||||||||||||| || |||||||
seq2  TGCATTTGATTCCCAGAACTTT-GAGGCAAAGGCAGGTGAATCCTCTGTG  94

seq1  AGTTCGAGGCCAGCATGGTCTACAAAAACAAGGGCTCTGTT-ATACAGAG  147
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AGTTCGAGGCCAGCATGGTCTAC-AAAACAAGGGCTCTGTTAATACAGAG  143

seq1  -AAAGCCTGTCTCAAAAAACCAAACAAAACCAACAAACAAGCAATGCCCC  196
       ||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AAAAGCCTGTCTCAAAAAACCAAACAAAACCAAC-AACAAGCAATG-CCC  191

seq1  CCCGCCCCGCAAACAAAACAACGTCAGACACTATAATTAACATTGATGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCGCAAACAAAACAACGTCAGACACTATAATTAACATTGATGCC  241

seq1  TCTACTTTTAGAAACTAAGGCAAAACTAAACCCGACTTAAGCTTTGCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTAGAAACTAAGGCAAAACTAAACCCGACTTAAGCTTTGCAGG  291

seq1  TGGTTATAATTTCCTTGGCTCACTGTCCTTATGTCATTGGAAAGCTCCGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATAATTTCCTTGGCTCACTGTCCTTATGTCATTGGAAAGCTCCGT  341

seq1  CCCCATAGCCCCATGTAAGAGAAGGACTTTTTTTCCATGTCCTAGGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGCCCCATGTAAGAGAAGGACTTTTTTTCCATGTCCTAGGGAAA  391

seq1  TGGGTCCGTCTCAGGAGATCTACCACAGCAGGTAACTGACTCAGCACTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCGTCTCAGGAGATCTACCACAGCAGGTAACTGACTCAGCACTAC  441

seq1  GTCATCAAAGAAGGGACAGTGTTTGCTTCAAAGCATACTCAAAATTACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAAGAAGGGACAGTGTTTGCTTCAAAGCATACTCAAAATTACTT  491

seq1  GATGAATAAGAATATGTGATTTCCAGCTAATACCTTGAGGTTTCACAATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAAGAATATGTGATTTCCAGCTAATACCTTGAGGTTTCACAATC  541

seq1  CTACACACTCACTCTCTTCCTCTCCTCAACGTTTATATATAGAAAGTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACTCACTCTCTTCCTCTCCTCAACGTTTATATATAGAAAGTCAC  591

seq1  CAACCTGTTCTCTCACGGCCACCGATGTCCCTGTGTTAGAGCATACAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTTCTCTCACGGCCACCGATGTCCCTGTGTTAGAGCATACAACT  641

seq1  TTATCGCTTGATACAATACTCATTAGAAATATTTCTCTATAGACCACAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCTTGATACAATACTCATTAGAAATATTTCTCTATAGACCACAGC  691

seq1  TGTGCCATACCTTTGGATTCTGCTAGAGAAGTGAGAAAGTTGTACCGCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATACCTTTGGATTCTGCTAGAGAAGTGAGAAAGTTGTACCGCAA  741

seq1  GCTGAGTGGTTTATGGAAACAAACGTGGTCTCACAGATCTTGGGGCCAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGGTTTATGGAAACAAACGTGGTCTCACAGATCTTGGGGCCAGG  791

seq1  CTTCTGAATCCAAATATGACAGGCCAGGTTTGCTCTGGTCTCCGAGGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAATCCAAATATGACAGGCCAGGTTTGCTCTGGTCTCCGAGGAAC  841

seq1  AATTTGCCCCACATCTGGAAACTCCTGGACTTGTAATAGCAAAACTCCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCCCACATCTGGAAACTCCTGGACTTGTAATAGCAAAACTCCAG  891

seq1  CCTTCCTGCATATATACCTATCTCCTGTGTGCCAGTTAGAAGTCTGCCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCATATATACCTATCTCCTGTGTGCCAGTTAGAAGTCTGCCCT  941

seq1  ACGTGGCATGATTTTAACTATGCATGAAATCACTCCATTAACTAATAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCATGATTTTAACTATGCATGAAATCACTCCATTAACTAATAAGG  991

seq1  TCATACATGTTGTGGTATGAGATGTTAGAACTCCCCTTGGGCCCAGGGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGTTGTGGTATGAGATGTTAGAACTCCCCTTGGGCCCAGGGTG  1041

seq1  ATGGAATTC  1055
      |||||||||
seq2  ATGGAATTC  1050