BAC Information

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BAC

Clone NameB6Ng01-238D14
Chromosome10 (Build37)
Map Location 13,634,551 - 13,783,475
singlet/doubletdoublet
Overlap geneEG666859, Hivep2
Upstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238D14.bB6Ng01-238D14.g
ACCGA048974GA048975
length1,1221,181
definitionB6Ng01-238D14.b B6Ng01-238D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,634,551 - 13,635,673)(13,782,307 - 13,783,475)
sequence
gaattctcgcttactgtgtagaatatcttcttatttcttcctgacttcct
ctttagaatgactttcactagtctcctcctgtgtcatccctcccgtcaac
agaacaatgcatgatttgggggtcacaggtcatccattttacacaccacc
tcagacacagcttgctttcaaacccacgttgatttgaaatatcctgaact
ggaaagcatgttttccaataacccactctatcctctgttgtttgtaccgt
tggtgttttacgtttgctagcctgctgtagctcgaagcccattgggaggt
ctaaacggatcacttcttcataacctggaaagtgtggctctctggaggac
cgtgctctcagcttacctcatgcgcgtacttttgtgaatctgtgaaggaa
gatttttccaacacaagttggtacccacaagaaatagaagtggtgaaagt
agtgtagatataagatatttatttagggataatgctcactgttttcttcc
tgttgtcttgcccatcagcatgggaactctgggaggtccctatcttatct
ctcaggggcaggatgatgccttttaaaaatgtaaggagaatccattgctc
tgtacaagcatacagatctgctagcccagccagcacaaacaatgacgcgc
tgatgccaaaggactcccacactttctctccatgagtaattcagcacact
ccactgtcagtcagctagcaacaacgctcccctctccccttagtatgctt
atatttccagagtctttcccaccacttctcaggctcaggatacattcttt
cccttccagcttgataaactggaaagggcagcaagattacttgattctct
tactggataaaagcccttttctcatacaagttatcctggaccttgctgcc
tctcagactctggcctccagagggaccggtgttgcctgctctgtctgaat
gcctgtgatcccacagtaataaggtagagtgagatacttgcacttcttgt
tagggttgctggtgtgcaagtgaagcaattgcgaagctacttgacatcag
atgaagacatgtcccttcagaattctctgcctgtcaagtgaaatatttat
gagttcctagctgttctcagac
gaattcatctgaacatttcgactagtttcaagttagaaaatgtctaaccc
agcgaatgctctatgtctagctatgacttgaccatgcttgttacccattg
gactgtctcagctatttatatgcaataaattcaacgaatggacaatgctg
gtcttgcatgcctgggccttgaggggtactttccctggtcatacacaggg
accatgttttgtgagtttatgggatgctccctggggcagggtaatacagg
cttcctacagcactcgtggaagtggctcacagcactttacaggagtaaac
ttgagtcactgtgtccttagatgcatgagcagtcttccaatactcgaagg
accagaaacacagatagaaatgtgtgcagagagagaacagaccccaaata
ttgccaacttcacagtgttctatcaccactatcactacacctagcagctt
ggttagtacagccgccctgctgagttagttactcatgtgagttttcctta
ggaaaatataacaaaattgcaagtatctgaaccaggaagacactcctact
tctgcaacccaaacacaaaataatccactatttgcaccaacacaatcata
ttgaatacataatacttaatgcccttgtgctgtatatgcattcttgtttt
tttacttattaatctgtaagcaatcatttatttccatgtgttcagacagc
tcattttcaccagccacatattgtttcttagagttagaatgatgtcgttt
cattcattatccctgtacatggggacttcctcacatgctcttatatgtgt
cactagaaataaaatgctattttgctttaaaatattatcaaaaacaaaat
acttatttaaaccaaaaggtggggaatacttttatgaactttatatttta
atgcataccaaatttatttaaagtactttacaaagccagccaacaataaa
taagtattctaatttcagcaaattcccctgactttgatggcttaaaaaaa
cacttcattcaatatcagttgtaccccaaaatcttttattatttgatggt
gacaaacctattttatccatttaaaggatcttaattggtcttatccttta
tgaaaatttaatgtactgaccagtaagtctggttgagttataggtttata
tggcctttgtggtgttcaggaaagaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13634551_13635673
seq2: B6Ng01-238D14.b_47_1168

seq1  GAATTCTCGCTTACTGTGTAGAATATCTTCTTATTTCTTCCTGACTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCTTACTGTGTAGAATATCTTCTTATTTCTTCCTGACTTCCT  50

seq1  CTTTAGAATGACTTTCACTAGTCTCCTCCTGTGTCATCCCTCCCGTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATGACTTTCACTAGTCTCCTCCTGTGTCATCCCTCCCGTCAAC  100

seq1  AGAACAATGCATGATTTGGGGGTCACAGGTCATCCATTTTACACACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATGCATGATTTGGGGGTCACAGGTCATCCATTTTACACACCACC  150

seq1  TCAGACACAGCTTGCTTTCAAACCCACGTTGATTTGAAATATCCTGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACAGCTTGCTTTCAAACCCACGTTGATTTGAAATATCCTGAACT  200

seq1  GGAAAGCATGTTTTCCAATAACCCACTCTATCCTCTGTTGTTTGTACCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCATGTTTTCCAATAACCCACTCTATCCTCTGTTGTTTGTACCGT  250

seq1  TGGTGTTTTACGTTTGCTAGCCTGCTGTAGCTCGAAGCCCATTGGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTACGTTTGCTAGCCTGCTGTAGCTCGAAGCCCATTGGGAGGT  300

seq1  CTAAACGGATCACTTCTTCATAACCTGGAAAGTGTGGCTCTCTGGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGGATCACTTCTTCATAACCTGGAAAGTGTGGCTCTCTGGAGGAC  350

seq1  CGTGCTCTCAGCTTACCTCATGCGCGTACTTTTGTGAATCTGTGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCTCAGCTTACCTCATGCGCGTACTTTTGTGAATCTGTGAAGGAA  400

seq1  GATTTTTCCAACACAAGTTGGTACCCACAAGAAATAGAAGTGGTGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCAACACAAGTTGGTACCCACAAGAAATAGAAGTGGTGAAAGT  450

seq1  AGTGTAGATATAAGATATTTATTTAGGGATAATGCTCACTGTTTTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGATATAAGATATTTATTTAGGGATAATGCTCACTGTTTTCTTCC  500

seq1  TGTTGTCTTGCCCATCAGCATGGGAACTCTGGGAGGTCCCTATCTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTTGCCCATCAGCATGGGAACTCTGGGAGGTCCCTATCTTATCT  550

seq1  CTCAGGGGCAGGATGATGCCTTTTAAAAATGTAAGGAGAATCCATTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCAGGATGATGCCTTTTAAAAATGTAAGGAGAATCCATTGCTC  600

seq1  TGTACAAGCATACAGATCTGCTAGCCCAGCCAGCAC-AACAATGACGCGC  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTACAAGCATACAGATCTGCTAGCCCAGCCAGCACAAACAATGACGCGC  650

seq1  TGATGCCAAAGGACTCCCACACTTTCTCTCCATGAGTAATTCAGCACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAAAGGACTCCCACACTTTCTCTCCATGAGTAATTCAGCACACT  700

seq1  CCACTGTCAGTCAGCTAGCAACAACGCTCCCCTCTCCCCTTAGTATGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCAGTCAGCTAGCAACAACGCTCCCCTCTCCCCTTAGTATGCTT  750

seq1  ATATTTCCAGAGTCTTTCCCACCACTTCTCAGGCTCAGGATACATTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCAGAGTCTTTCCCACCACTTCTCAGGCTCAGGATACATTCTTT  800

seq1  CCCTTCCAGCTTGATAAACTGGAAAGGGCAGCAAGATTACTTGATTTCTC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTTCCAGCTTGATAAACTGGAAAGGGCAGCAAGATTACTTGA-TTCTC  849

seq1  TTACTGGATAAAAGCCCTTTTCTCATACAAGTTATCCTGGACCTTGCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATAAAAGCCCTTTTCTCATACAAGTTATCCTGGACCTTGCTGC  899

seq1  CTCTCAGACTCTGG-CTCCAGAGGGACCGGTGTTGCCTGCTCTGTCCTGA  948
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CTCTCAGACTCTGGCCTCCAGAGGGACCGGTGTTGCCTGCTCTGT-CTGA  948

seq1  ATGCCTGTGATCCCACAGTAATAA-GTAGAGTGAGATACTTGCAC-TCTT  996
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  ATGCCTGTGATCCCACAGTAATAAGGTAGAGTGAGATACTTGCACTTCTT  998

seq1  GTTAGGGTTGCTGGTGTGCAAGTGAAAGCAATTGCCGAAGCTACTTGACA  1046
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GTTAGGGTTGCTGGTGTGCAAGTG-AAGCAATTG-CGAAGCTACTTGACA  1046

seq1  TCAGATG-AGACATGTTCCCTTCCAGAA-TCTCTG-CTG-CAAGTGAAAA  1092
      ||||||| ||||||| |||||| ||||| |||||| ||| |||||| |||
seq2  TCAGATGAAGACATG-TCCCTT-CAGAATTCTCTGCCTGTCAAGTG-AAA  1093

seq1  TATTTATGAGTTCCTAGGCTGTTTCTCAGAC  1123
      |||||||||||||||| |||| |||||||||
seq2  TATTTATGAGTTCCTA-GCTG-TTCTCAGAC  1122

seq1: chr10_13782307_13783475
seq2: B6Ng01-238D14.g_68_1247 (reverse)

seq1  TCCCC---TTCCTGA--ACCACAAA-GCCATATAACTATAAAACTAAAAC  44
      |||||   |||||||  |||||||| |||||||||   || ||||  |||
seq2  TCCCCTCTTTCCTGAACACCACAAAGGCCATATAAACCTATAACT-CAAC  49

seq1  CAGGACCTAAACATGGTCAAATTACATAAATTTTTCATTAAAGATAAAGA  94
      || ||| ||    |||||  | ||||| || ||||||| || |||||   
seq2  CA-GACTTA---CTGGTC--AGTACATTAAATTTTCATAAAGGATAAGAC  93

seq1  CAA-TAAGATTCTTTTAAATGATAAAATAGTTTTTGTCACCATTAAAATA  143
      ||| |||||| |||| ||  ||||||||||  |||||||||| | |||||
seq2  CAATTAAGATCCTTTAAATGGATAAAATAG-GTTTGTCACCA-TCAAATA  141

seq1  ATAAAAGATTTTGGGGTACAACTGATATTGAATGAAGTGTTTTTTTTAAG  193
      |||||||||||||||||||||||||||||||||||||||||||||| |  
seq2  ATAAAAGATTTTGGGGTACAACTGATATTGAATGAAGTGTTTTTTTAAGC  191

seq1  CATCAAAGTCA-GGGAATTTGCTG-AATTAGAATACTTATTTATTGTTGG  241
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CATCAAAGTCAGGGGAATTTGCTGAAATTAGAATACTTATTTATTGTTGG  241

seq1  CT-GCTTTGT-AAGTACTTTAAAT-AATTTGGTATGCATT-AAATAT-AA  286
      || ||||||| ||||||||||||| ||||||||||||||| |||||| ||
seq2  CTGGCTTTGTAAAGTACTTTAAATAAATTTGGTATGCATTAAAATATAAA  291

seq1  GTTCAT-AAAGTATT-CCCACCTTTTGGTTTAA--TAGTATTTTGTTTTT  332
      |||||| |||||||| |||||||||||||||||   ||||||||||||||
seq2  GTTCATAAAAGTATTCCCCACCTTTTGGTTTAAATAAGTATTTTGTTTTT  341

seq1  GATAATATTTT-AAGCAAAATAGCATTTTATTTCTAGTGACACATATAAG  381
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAATATTTTAAAGCAAAATAGCATTTTATTTCTAGTGACACATATAAG  391

seq1  AGCATGTGAGGAAGT-CCCATGTACAGGGATAATGAATGAAACGACATCA  430
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCATGTGAGGAAGTCCCCATGTACAGGGATAATGAATGAAACGACATCA  441

seq1  TTCTAACTCTAAGAAACAATATGTGGCTGGTGAAAATGAGCTGTCTGAAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTCTAAGAAACAATATGTGGCTGGTGAAAATGAGCTGTCTGAAC  491

seq1  ACATGGAAATAAATGATTGCTTACAGATTAATAAGTAAAAAAACAAGAAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAATAAATGATTGCTTACAGATTAATAAGTAAAAAAACAAGAAT  541

seq1  GCATATACAGCACAAGGGCATTAAGTATTATGTATTCAATATGATTGTGT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACAGCACAAGGGCATTAAGTATTATGTATTCAATATGATTGTGT  591

seq1  TGGTGCAAATAGTGGATTATTTTGTGTTTGGGTTGCAGAAGTAGGAGTGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAAATAGTGGATTATTTTGTGTTTGGGTTGCAGAAGTAGGAGTGT  641

seq1  CTTCCTGGTTCAGATACTTGCAATTTTGTTATATTTTCCTAAGGAAAACT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTTCAGATACTTGCAATTTTGTTATATTTTCCTAAGGAAAACT  691

seq1  CACATGAGTAACTAACTCAGCAGGGCGGCTGTACTAACCAAGCTGCTAGG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGTAACTAACTCAGCAGGGCGGCTGTACTAACCAAGCTGCTAGG  741

seq1  TGTAGTGATAGTGGTGATAGAACACTGTGAAGTTGGCAATATTTGGGGTC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGATAGTGGTGATAGAACACTGTGAAGTTGGCAATATTTGGGGTC  791

seq1  TGTTCTCTCTCTGCACACATTTCTATCTGTGTTTCTGGTCCTTCGAGTAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCTCTGCACACATTTCTATCTGTGTTTCTGGTCCTTCGAGTAT  841

seq1  TGGAAGACTGCTCATGCATCTAAGGACACAGTGACTCAAGTTTACTCCTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACTGCTCATGCATCTAAGGACACAGTGACTCAAGTTTACTCCTG  891

seq1  TAAAGTGCTGTGAGCCACTTCCACGAGTGCTGTAGGAAGCCTGTATTACC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCTGTGAGCCACTTCCACGAGTGCTGTAGGAAGCCTGTATTACC  941

seq1  CTGCCCCAGGGAGCATCCCATAAACTCACAAAACATGGTCCCTGTGTATG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAGGGAGCATCCCATAAACTCACAAAACATGGTCCCTGTGTATG  991

seq1  ACCAGGGAAAGTACCCCTCAAGGCCCAGGCATGCAAGACCAGCATTGTCC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAAAGTACCCCTCAAGGCCCAGGCATGCAAGACCAGCATTGTCC  1041

seq1  ATTCGTTGAATTTATTGCATATAAATAGCTGAGACAGTCCAATGGGTAAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTGAATTTATTGCATATAAATAGCTGAGACAGTCCAATGGGTAAC  1091

seq1  AAGCATGGTCAAGTCATAGCTAGACATAGAGCATTCGCTGGGTTAGACAT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGTCAAGTCATAGCTAGACATAGAGCATTCGCTGGGTTAGACAT  1141

seq1  TTTCTAACTTGAAACTAGTCGAAATGTTCAGATGAATTC  1169
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTTGAAACTAGTCGAAATGTTCAGATGAATTC  1180