BAC Information

Click to search

BAC

Clone NameB6Ng01-238G04
Chromosome10 (Build37)
Map Location 103,162,861 - 103,163,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238G04.bB6Ng01-238G04.g
ACCGA049095GA049096
length1,1321,211
definitionB6Ng01-238G04.b B6Ng01-238G04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatcatgttgggttttcattactgaccattgctttttacata
aacatttttggttctttgaactagtttccattggttaatctgaaaagttc
ttttgtcaaggttctatgatttgtgccatctgaatttgtcttgagctaat
ttaaaaaatatgttaccattttaaaggagcagttttagataattgtaggg
tcattgtattataggcattcctcttgcacatatttcaggctttccttctc
atccttcactcagggaaatcaggaaatggaaaactgtagttagaattggc
aaatttcttcaggacagctgggagctttaatgattgagagtctcttaaaa
tgaagttttcttgtagttttattgcctaggattttccaatttctatagcc
aatatggctataaatttaaggggaataatttttaaaataccttcaacaat
atttttttaaaaattttatgtgtatgagtattttgccagcattaatggtt
gtgcactacttgcatacctaatgcccacagaggtcaaaagtaggcatcta
atgacctggaactggagttaaaaacagttgtgagccatcatgtctgttct
tggaatcaaacttcgcttctctaaaagtgtagccaatgcccttaaactct
gtgccatctctatagtcctgtttttagaattttaaaattttcaataagag
aagtctattaacttatccttcttagtatattttcagtaaaataaatatca
atatataatcaggacattgaatctgatagataaattgaactattctacaa
caattgcatataatttgtccatatcagaagcttctaatgttacattgttt
aaattaaataatttttgttccaaatttttactgtgagtaattgtctgtat
ttaggaaaatgggatttaaaataatgagatcacacagattaagtgatttt
gcattcaatggtgctagcatcttcatcaaaaggagaaaacatggcatcat
gtgcacacagtaaacatgctatatgaatgaagacccactttagaataaat
ctttttaactagaagccagagttgtttttctaacagcagagtagcgataa
aagtatgatatattttttctctttacatcttc

gaattctctgaaggaagaacaagagttcagaatttagtgtctcgtcaaac
agggttggagaatttgtaaatcttcagggtaacctgatgcaggtagttac
ttgcagtatccttcctctgggtctgtccattgagaagacaaacagaccca
gaggggtctgcagaggggttgacttacctcagcttcttacctcatggagg
ctaatgaatgcacctttcaagtccagtacagtgtatacctaattttctgg
aagaatcattctcatgagactcaagatgttccatgtttcttcatagacag
gtgaggtatattccagagtaagtgacagggcaataggatgcctgtctctt
caactagggaacatggacaggcatttttcttttgattctagggtcattgg
ccgtattttagtctgaacaagagtatctgaacttattacttgaaccatta
tagggtcttagtgtttggagagtcctgagctgttatttgctgttcatact
tcttagaaactttgttgtcattccgcaaggtagtccaactgcatcttttc
attagagatagaactttcagctaagatattcctccgacagaagttaagac
accaaaatttttttggttgcctataataaaactgtatctcatcatagatg
atgagaaatgatggtaactttccgtttatgcaaaaggtcttttcctaatc
tggtttctgtggtacccaccctttgagctaacttccgcatctgggaccta
cctataccattaagttacttaaaactttgtaatttctttttaatatctgg
ggcagacagggtgagaaagtgaatctttcagcagctatatttaattattc
taaatatgacctcatgaaaattgcttacagtttccttggtcagtgttaga
cagaagaggcaatctgttccattcaggatgcttttttctacaggcatcta
ccccacccaacttgtgcgcagatattcattttttaaaagaggaatggtgg
gacttgagttttccattataagcatcattgggttggcaaagaagacctaa
tcatgggcagacggagcaaaacttatttttttctttctttcaggacttgt
ttaggtgcagcatggagaaagggagaaatggccacattgatggaacctct
ttcctcctctcctggtgtttcaccggagtcccgtgtaggagcaggtctgt
ggggtgcgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103162861_103163998
seq2: B6Ng01-238G04.b_46_1177

seq1  GAATTCATTATCATGTTGGGTTTTCATTACTGACCATTGCTTTTTACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCATGTTGGGTTTTCATTACTGACCATTGCTTTTTACATA  50

seq1  AACATTTTTGGTTCTTTGAACTAGTTTCCATTGGTTAATCTGAAAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTGGTTCTTTGAACTAGTTTCCATTGGTTAATCTGAAAAGTTC  100

seq1  TTTTGTCAAGGTTCTATGATTTGTGCCATCTGAATTTGTCTTGAGCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAAGGTTCTATGATTTGTGCCATCTGAATTTGTCTTGAGCTAAT  150

seq1  TTAAAAAATATGTTACCATTTTAAAGGAGCAGTTTTAGATAATTGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATATGTTACCATTTTAAAGGAGCAGTTTTAGATAATTGTAGGG  200

seq1  TCATTGTATTATAGGCATTCCTCTTGCACATATTTCAGGCTTTCCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATTATAGGCATTCCTCTTGCACATATTTCAGGCTTTCCTTCTC  250

seq1  ATCCTTCACTCAGGGAAATCAGGAAATGGAAAACTGTAGTTAGAATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCACTCAGGGAAATCAGGAAATGGAAAACTGTAGTTAGAATTGGC  300

seq1  AAATTTCTTCAGGACAGCTGGGAGCTTTAATGATTGAGAGTCTCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTCAGGACAGCTGGGAGCTTTAATGATTGAGAGTCTCTTAAAA  350

seq1  TGAAGTTTTCTTGTAGTTTTATTGCCTAGGATTTTCCAATTTCTATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTTCTTGTAGTTTTATTGCCTAGGATTTTCCAATTTCTATAGCC  400

seq1  AATATGGCTATAAATTTAAGGGGAATAATTTTTAAAATACCTTCAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTATAAATTTAAGGGGAATAATTTTTAAAATACCTTCAACAAT  450

seq1  ATTTTTTTAAAAATTTTATGTGTATGAGTATTTTGCCAGCATTAATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAAAAATTTTATGTGTATGAGTATTTTGCCAGCATTAATGGTT  500

seq1  GTGCACTACTTGCATACCTAATGCCCACAGAGGTCAAAAGTAGGCATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTACTTGCATACCTAATGCCCACAGAGGTCAAAAGTAGGCATCTA  550

seq1  ATGACCTGGAACTGGAGTTAAAAACAGTTGTGAGCCATCATGTCTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGAACTGGAGTTAAAAACAGTTGTGAGCCATCATGTCTGTTCT  600

seq1  TGGAATCAAACTTCGCTTCTCTAAAAGTGTAGCCAATGCCCTTAAACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCAAACTTCGCTTCTCTAAAAGTGTAGCCAATGCCCTTAAACTCT  650

seq1  GTGCCATCTCTATAGTCCTGTTTTTAGAATTTTAAAATTTTCAATAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCTCTATAGTCCTGTTTTTAGAATTTTAAAATTTTCAATAAGAG  700

seq1  AAGTCTATTAACTTATCCTTCTTAGTATATTTTCAGTAAAATAAATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATTAACTTATCCTTCTTAGTATATTTTCAGTAAAATAAATATCA  750

seq1  ATATATAATCAGGACATTGAATCTGATAGATAAATTGAACTATTCTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATCAGGACATTGAATCTGATAGATAAATTGAACTATTCTACAA  800

seq1  CAATTGCATATAATTTGTCCATATCAGAAGCTTCTAATGTTACATTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCATATAATTTGTCCATATCAGAAGCTTCTAATGTTACATTGTTT  850

seq1  AAATTAAATAATTTTTGTTCCAAATTTTTACTGTGAGTAATTGTCTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAATTTTTGTTCCAAATTTTTACTGTGAGTAATTGTCTGTAT  900

seq1  TTAGGAAAATGGGA-TTAAAATAATGAGATCACACAGATTAAGGTGATTT  949
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TTAGGAAAATGGGATTTAAAATAATGAGATCACACAGATTAA-GTGATTT  949

seq1  TGCATTCAATGGTGCTAGCATCTTCATC-AAAGGAGAAAACATGGCATCA  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCATTCAATGGTGCTAGCATCTTCATCAAAAGGAGAAAACATGGCATCA  999

seq1  TGTGCACACAGTAAACATGCTATATGAAATTGAAGACACACTTTAGAATA  1048
      ||||||||||||||||||||||||||||  ||||||| ||||||||||| 
seq2  TGTGCACACAGTAAACATGCTATATGAA--TGAAGACCCACTTTAGAAT-  1046

seq1  AAATCTTTTTAACTTAAGAAAGCCAGAAGTTGTTTTCTAAACAGCAGAAG  1098
      ||||||||||||||  || ||||||| |||||||||   |||||||||  
seq2  AAATCTTTTTAACT--AG-AAGCCAG-AGTTGTTTTTCTAACAGCAGA--  1090

seq1  TTAGCGAT-AAAGTATGGAATATATTTTCTC-TTACATCTTC  1138
       ||||||| ||||||||  |||| ||||||| ||||||||||
seq2  GTAGCGATAAAAGTATGATATATTTTTTCTCTTTACATCTTC  1132


| Home | SequenceCutter | Blast | Download |