BAC Information

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BAC

Clone NameB6Ng01-239E22
Chromosome10 (Build37)
Map Location 52,041,042 - 52,042,108
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1
Downstream geneGopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E22.bB6Ng01-239E22.g
ACCGA049768GA049769
length9641,055
definitionB6Ng01-239E22.b B6Ng01-239E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttataggaatataaaatgattattatttttaatttatttttatt
agatattttcttcatttacatttcaaatgctatcccctttcctagtttcc
tctccgaaagtcccctacacgctcccccctccccttgctccacaacccaa
ccactcctgcttcctagccctggcattcccctatacgggggcatataatc
ttcgaaagaccaacggtctctcctcccattgatggtcgactgggccatcc
tctgctacttatgcagctagagacaggagctctgggggtactggttagtt
catattgttgttcctcctatagggttgcggaccccttaatctccttgggt
actttctctagctccttcattggggaccttaatgattattaagaaataca
ttaagattccagtcggcgacagtctaccttgggcacaaactcagcggaca
gtcccaaggtccccagagaagtctccactcccaggcactctagcacaccc
aggatcttaggatcacctgtgagtagaacacaacatctgttccaacacca
ccaggagtgactgggaccagcaggatcaaggacacaggaaccccacccag
ccagaggcttgggttcgttctgataggcaccagtctaccttgggcacaat
cttggtgtacagtcccacagttcccagaggagtctccactccaaggcact
ctagcatgcccaggatcgcgggattccaggatcgcagggatctcaggatt
ccaggagcttggtcacaccaagatctcaggggtctcagagacagcttaac
tcctaggaactctgacacacccagaaatcccaggatcccagaggaagctg
gactctggggagttctgactgagatggggattacaggaaaggacaggctc
ccattcagatatatagagggcagggagcacttgagacaatcagagaactc
ctaaaccctgataa
gaattctatcgatgttaaagtagggtgctgagagctcatggcatagggtc
tgctggttatagtggaggttaaaccatttaccttacggagtttacaagat
tgtgtatgtgtactaattgtaataaactatgccaaatcagagagcccctg
acttctatttggccaccacctgctgagctagcgagaggctctcatcttgt
aactgaactcccatgatgcaacttgcatttttttttttaattcaggcttt
cgtattacccaggctgtctatcaattctcagtgtagcctaggatgaccct
ggatttcttatcctcctgcatttgcctcccgagtgttggatttacagatg
tgcaacctcacatctggtttgaccttttctcttgcaagaggatatggtca
tactgtagagcataatacttgttgctcagtcaccttggtaatgattgctt
tttctagagatttgtagaaagtatgattttaaactgtcccagggacaaat
tttgatgttgttggctaaaaattccacggtgaaatatacttataatctcc
caccctttaaggcagtacagctcctaagtgcttcactgctggaaaatcag
ggcagatccataaggagccaaggcaatatgtcaggcaagatggagaagct
tatagtgaaaccccaagctcttttttaaaatgtgtgtgagtacactctct
tcacacacaccacaaaagtacatcagatcccactacagatggttgggtgg
caccatgtagttgctgggaattgaactcaggacctctggaagagcagttg
gtgctcttaactgctgagccatctctccagcccaaccacaagctcttgta
gagagtattacatagctacatacgcttctggcccttgtcccagattctcc
tcatttcatcaaaatgcttgaagacaaactccttagaagtgcaggaagta
caggatggatcacagatggataaggacttctttaaaagcttcctaaagtg
agcataaaaatccttagcaggcgtgtgctcacaccgttatccagcatttg
gaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52041042_52042108
seq2: B6Ng01-239E22.g_68_1122

seq1  GAATTCTATCGATGTTAAAGTAGGGTGCTGAGAGCTCATGGCATAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGATGTTAAAGTAGGGTGCTGAGAGCTCATGGCATAGGGTC  50

seq1  TGCTGGTTATAGTGGAGGTTAAACCATTTACCTTACGGAGTTTACAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTATAGTGGAGGTTAAACCATTTACCTTACGGAGTTTACAAGAT  100

seq1  TGTGTATGTGTACTAATTGTAATAAACTATGCCAAATCAGAGAGCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTACTAATTGTAATAAACTATGCCAAATCAGAGAGCCCCTG  150

seq1  ACTTCTATTTGGCCACCACCTGCTGAGCTAGCGAGAGGCTCTCATCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATTTGGCCACCACCTGCTGAGCTAGCGAGAGGCTCTCATCTTGT  200

seq1  AACTGAACTCCCATGATGCAACTTGCATTTTTTTTTTTAATTCAGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACTCCCATGATGCAACTTGCATTTTTTTTTTTAATTCAGGCTTT  250

seq1  CGTATTACCCAGGCTGTCTATCAATTCTCAGTGTAGCCTAGGATGACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTACCCAGGCTGTCTATCAATTCTCAGTGTAGCCTAGGATGACCCT  300

seq1  GGATTTCTTATCCTCCTGCATTTGCCTCCCGAGTGTTGGATTTACAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTATCCTCCTGCATTTGCCTCCCGAGTGTTGGATTTACAGATG  350

seq1  TGCAACCTCACATCTGGTTTGACCTTTTCTCTTGCAAGAGGATATGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTCACATCTGGTTTGACCTTTTCTCTTGCAAGAGGATATGGTCA  400

seq1  TACTGTAGAGCATAATACTTGTTGCTCAGTCACCTTGGTAATGATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGAGCATAATACTTGTTGCTCAGTCACCTTGGTAATGATTGCTT  450

seq1  TTTCTAGAGATTTGTAGAAAGTATGATTTTAAACTGTCCCAGGGACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAGATTTGTAGAAAGTATGATTTTAAACTGTCCCAGGGACAAAT  500

seq1  TTTGATGTTGTTGGCTAAAAATTCCACGGTGAAATATACTTATAATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTGTTGGCTAAAAATTCCACGGTGAAATATACTTATAATCTCC  550

seq1  CACCCTTTAAGGCAGTACAGCTCCTAAGTGCTTCACTGCTGGAAAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTAAGGCAGTACAGCTCCTAAGTGCTTCACTGCTGGAAAATCAG  600

seq1  GGCAGATCCATAAGGAGCCAAGGCAATATGTCAGGCAAGATGGAGAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCCATAAGGAGCCAAGGCAATATGTCAGGCAAGATGGAGAAGCT  650

seq1  TATAGTGAAACCCCAAGCTCTTTTTTAAAATGTGTGTGAGTACACTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAAACCCCAAGCTCTTTTTTAAAATGTGTGTGAGTACACTCTCT  700

seq1  TCACACACACCACAAAAGTACATCAGATCCCACTACAGATGGTTGGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACCACAAAAGTACATCAGATCCCACTACAGATGGTTGGGTGG  750

seq1  CACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTTG  800

seq1  GTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAACCACAAGCTCTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAACCACAAGCTCTTGTA  850

seq1  GAGAGTATTACATAGCTACATACGCTTCTGGCCCTTGTCCCAGATTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATTACATAGCTACATACGCTTCTGGCCCTTGTCCCAGATTCTCC  900

seq1  TCATTTCATCAAAATGCTTGAAGACAAACTCCTTAGAAGTGCAGGAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATCAAAATGCTTGAAGACAAACTCCTTAGAAGTGCAGGAAGTA  950

seq1  CAGGATGGATCACAGATGGATAAAGGACTTCTTTAAAAGCTTCCTAAAGT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CAGGATGGATCACAGATGGAT-AAGGACTTCTTTAAAAGCTTCCTAAAG-  998

seq1  TGAGCAATAAAAATCCTTTAAGCCAGGCGGTGGTGGCTCACACCTTTAAT  1050
      ||||| ||||||||||||  || ||||| |||   ||||||||| |||  
seq2  TGAGC-ATAAAAATCCTT--AG-CAGGC-GTG--TGCTCACACCGTTA--  1039

seq1  CCCAGCATTTGGGAAGC  1067
       ||||||||| ||||||
seq2  TCCAGCATTT-GGAAGC  1055