BAC Information

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BAC

Clone NameB6Ng01-239N22
Chromosome10 (Build37)
Map Location 33,730,053 - 33,910,672
singlet/doubletdoublet
Overlap geneRwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse
Upstream geneEG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239N22.bB6Ng01-239N22.g
ACCGA050182GA050183
length1,127963
definitionB6Ng01-239N22.b B6Ng01-239N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,730,053 - 33,731,185)(33,909,716 - 33,910,672)
sequence
gaattccagaagacagggaggtcaaggtcatctgggattaaaggcgtggt
gacacacaccttcaatctgggctacaccttctgctggaggcctacataat
gacattggaagaaggaagatactctctgtctctctgtctctgtctccttt
gactgctggccttgtgggactgagtaactcctagatccttggacttctat
tcacagctgctgctgaccattgttgggagttggactacagactgtaagtc
accaacaaattcccttactatatagagactacctatttaagttctgtgac
tctagagaaccctgactaatacaacaaccatccataactctagatctaaa
ccctcttctagcttctgcagcaagcaggcatgtacacttacatacaagcc
cagaaacactcatgtacataaaataacattaaacttttaaaaagtgaaaa
caaaaaaaaaaggaagatagaagaaacaaaatatataggcatatctataa
tctaaaacctaacaagtacatcattccaattcgctttcctaagtatgtca
ccatttcctggttaggacagaagtatgctttttataacattccaagtatc
atttacttgtgttgaaatattttccttacaataatattccataagtagaa
acacacaaagggaaagctctcctgtagtaatctaaacccacaacagcata
tttttctattcattaacactgaaaatgtattggatgagataaaatatttt
catttttaacttgcctgaagtactagtgagacaaggttttaaagattcat
ttataatgccacgtctagacactaagtatcaactctcttcacccactctt
ctactagtcagttcattcaaatgaaggatagtgacacaaccagcagaatc
taggcattgttttcaaacagttaaaaacatttctcaaattaaagatgact
gcacacagctgttttttacagagtactatttagctcccaattaaggtact
gtttcagatatgagatcttctcttgcaaggtttatagatgttaattctgc
cacaaggagcagtgcttctgcacagaatactggtttccatagttcaaagg
agcttaagaactttgagcagattcatt
gaattcctagtgtcacataactaagttgatagaaatgaacttcaagttat
attatgaaaccgtgtggtgcctccatgagaaccaatcaggaggcagggat
aggaatgctttttgattgcaaaaggctgctcttaaaacagtgtcacacac
catcattaccttctgtgtggttttgctgtgtgggcacagggttataatta
ctccttcagtaacatgtgacaattctagagggttccacacgttgtcatct
cgtattgtggatttttgggtgagaatggcttttgggggacggtgtatttt
attttactcttagataaggaatagtctgctcagtgaaagaagctttcagt
ttgaccaagggcttgcaggtttgaagttgttctatctgacttcacacact
ggggagtataattgcagggatgattatatagcacccaaaccatgttttct
taggatttgacatagttcacagtaagggtagatttatttcactacggaaa
tttaaggttttatttgatgttgaggatttgtttttcagaaattattttga
tcattcatttactaaaactgaagctaaaaaagaggagagagagatctcta
aaaagtacatatgtgcatttctttagttaaattcagtgtaaaggaataca
caagagtgcacaggagatgacaacaagatatcccccaggaatgtggaaag
aggattctttcaagggttaggagaatgggcttcctgcttggcatgtgtta
ggccccttcaatgttggcctagattcttattaagaagcaccaagagaggg
aacttggaatagatataaagtgagtgaacacttagcttccttcctcggtg
ttcacagtttcttaggattgatgctgtaacaagtccttctgccaggggac
tgggcaacttctgcctctggtagaaaatgaacagaccacgttggatgctg
tgtaactgttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33730053_33731185
seq2: B6Ng01-239N22.b_46_1172

seq1  GAATTCCAGAAGACAGGGAGGTCAAGGTCATCTGGGATTAAAGGCGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGACAGGGAGGTCAAGGTCATCTGGGATTAAAGGCGTGGT  50

seq1  GACACACACCTTCAATCTGGGCTACACCTTCTGCTGGAGGCCTACATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACCTTCAATCTGGGCTACACCTTCTGCTGGAGGCCTACATAAT  100

seq1  GACATTGGAAGAAGGAAGATACTCTCTGTCTCTCTGTCTCTGTCTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGAAGAAGGAAGATACTCTCTGTCTCTCTGTCTCTGTCTCCTTT  150

seq1  GACTGCTGGCCTTGTGGGACTGAGTAACTCCTAGATCCTTGGACTTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGGCCTTGTGGGACTGAGTAACTCCTAGATCCTTGGACTTCTAT  200

seq1  TCACAGCTGCTGCTGACCATTGTTGGGAGTTGGACTACAGACTGTAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTGCTGCTGACCATTGTTGGGAGTTGGACTACAGACTGTAAGTC  250

seq1  ACCAACAAATTCCCTTACTATATAGAGACTACCTATTTAAGTTCTGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAATTCCCTTACTATATAGAGACTACCTATTTAAGTTCTGTGAC  300

seq1  TCTAGAGAACCCTGACTAATACAACAACCATCCATAACTCTAGATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAACCCTGACTAATACAACAACCATCCATAACTCTAGATCTAAA  350

seq1  CCCTCTTCTAGCTTCTGCAGCAAGCAGGCATGTACACTTACATACAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTAGCTTCTGCAGCAAGCAGGCATGTACACTTACATACAAGCC  400

seq1  CAGAAACACTCATGTACATAAAATAACATTAAACTTTTAAAAAGTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACTCATGTACATAAAATAACATTAAACTTTTAAAAAGTGAAAA  450

seq1  CAAAAAAAAAAGGAAGATAGAAGAAACAAAATATATAGGCATATCTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAGGAAGATAGAAGAAACAAAATATATAGGCATATCTATAA  500

seq1  TCTAAAACCTAACAAGTACATCATTCCAATTCGCTTTCCTAAGTATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACCTAACAAGTACATCATTCCAATTCGCTTTCCTAAGTATGTCA  550

seq1  CCATTTCCTGGTTAGGACAGAAGTATGCTTTTTATAACATTCCAAGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTGGTTAGGACAGAAGTATGCTTTTTATAACATTCCAAGTATC  600

seq1  ATTTACTTGTGTTGAAATATTTTCCTTACAATAATATTCCATAAGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTGTGTTGAAATATTTTCCTTACAATAATATTCCATAAGTAGAA  650

seq1  ACACACAAAGGGAAAGCTCTCCTGTAGTAATCTAAACCCACAACAGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAGGGAAAGCTCTCCTGTAGTAATCTAAACCCACAACAGCATA  700

seq1  TTTTTCTATTCATTAACACTGAAAATGTATTGGATGAGATAAAATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATTCATTAACACTGAAAATGTATTGGATGAGATAAAATATTTT  750

seq1  CATTTTTAACTTGCCTGAAGTACTAGTGAGACAAGGTTTTAAAGATTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACTTGCCTGAAGTACTAGTGAGACAAGGTTTTAAAGATTCAT  800

seq1  TTATAATGCCACGTCTAGACACTAAGTATCAACTCTCTTCACCCACTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCCACGTCTAGACACTAAGTATCAACTCTCTTCACCCACTCTT  850

seq1  CTACTAGTCAGTTCATTCAAATGAAGGATAGTGACACAACCAGCAGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGTCAGTTCATTCAAATGAAGGATAGTGACACAACCAGCAGAATC  900

seq1  TAGGCATTG-TTTCAAACAGTTAAAAACATTTCTCAAATTAAAGATGAAC  949
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGCATTGTTTTCAAACAGTTAAAAACATTTCTCAAATTAAAGATG-AC  949

seq1  TGCACACAGCTGTTTTTACAAGAGTACTA-TTAGCTCCCAATAAAGGTAC  998
      |||||||||||||||||   ||||||||| |||||||||||| |||||||
seq2  TGCACACAGCTGTTTTTTACAGAGTACTATTTAGCTCCCAATTAAGGTAC  999

seq1  TG-TTCAGAATATGAGAATCTTCTC-TGCAAAGTTTAATAAGAAGGTTAA  1046
      || ||||| ||||||| |||||||| ||||| |||||   ||| |  | |
seq2  TGTTTCAG-ATATGAG-ATCTTCTCTTGCAAGGTTTA--TAGATG--TTA  1043

seq1  ATTCTGCCACAAGGAGCAGTGCTTTCTGCACAG-ATACTGGTTTCACATA  1095
      |||||||||||||||||||||| |||||||||| ||||||||||| ||||
seq2  ATTCTGCCACAAGGAGCAGTGC-TTCTGCACAGAATACTGGTTTC-CATA  1091

seq1  GTCAAAAGGAGCTCAGGGGGCTTTGAGCAGTATTCATT  1133
      ||  ||||||||| |  |  |||||||||| |||||||
seq2  GTTCAAAGGAGCTTA-AGAACTTTGAGCAG-ATTCATT  1127

seq1: chr10_33909716_33910672
seq2: B6Ng01-239N22.g_65_1027 (reverse)

seq1  TGGAACAGTT-CACAGCATCCCACCGTGGTCTGTCCA-TTTCTACAGGAG  48
      |||||||||| |||||||| ||| |||||||||| || |||||||  |||
seq2  TGGAACAGTTACACAGCAT-CCAACGTGGTCTGTTCATTTTCTACCAGAG  49

seq1  GCAGAAGTTGGCCAGTCCCCTGGCAGAAGGGCTTGTTACAGCCTCATTCC  98
      |||||||||| ||||||||||||||||||| ||||||||||| ||| |||
seq2  GCAGAAGTTGCCCAGTCCCCTGGCAGAAGGACTTGTTACAGCATCAATCC  99

seq1  T-AGAAACTGTGAACACCGAGGAAGG-AGCTTAGTGTTCACTCACTTTAT  146
      | |||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  TAAGAAACTGTGAACACCGAGGAAGGAAGCTAAGTGTTCACTCACTTTAT  149

seq1  ATCTATTCCAAGTTCCCTCTCTTGGTGCTTCTTAATAAGAATCTAGGCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCCAAGTTCCCTCTCTTGGTGCTTCTTAATAAGAATCTAGGCCA  199

seq1  ACATTG-AGGGGCCTAACACATGCCAAGCAGGAAGCCCATTCTCCTAACC  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAGGGGCCTAACACATGCCAAGCAGGAAGCCCATTCTCCTAACC  249

seq1  CTTG-AAGAATCCTCTTTCCACATTCCTGGGGGATATCTTGTTGTCATCT  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAATCCTCTTTCCACATTCCTGGGGGATATCTTGTTGTCATCT  299

seq1  CCTGTGCACTCTTGTGTATTCCTTTACACTGAATTTAACTAAAGAAATGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCACTCTTGTGTATTCCTTTACACTGAATTTAACTAAAGAAATGC  349

seq1  ACATATGTAC-TTTTAGAGATCTCTCTCTCCTCTTTTTTAGCTTCAGTTT  393
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTACTTTTTAGAGATCTCTCTCTCCTCTTTTTTAGCTTCAGTTT  399

seq1  TAGTAAATGAATGATCAAAATAATTTCTGAAAAACAAATCCTCAACATCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGAATGATCAAAATAATTTCTGAAAAACAAATCCTCAACATCA  449

seq1  AATAAAACCTTAAATTTCCGTAGTGAAATAAATCTACCCTTACTGTGAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCTTAAATTTCCGTAGTGAAATAAATCTACCCTTACTGTGAAC  499

seq1  TATGTCAAATCCTAAGAAAACATGGTTTGGGTGCTATATAATCATCCCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAATCCTAAGAAAACATGGTTTGGGTGCTATATAATCATCCCTG  549

seq1  CAATTATACTCCCCAGTGTGTGAAGTCAGATAGAACAACTTCAAACCTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATACTCCCCAGTGTGTGAAGTCAGATAGAACAACTTCAAACCTGC  599

seq1  AAGCCCTTGGTCAAACTGAAAGCTTCTTTCACTGAGCAGACTATTCCTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTGGTCAAACTGAAAGCTTCTTTCACTGAGCAGACTATTCCTTA  649

seq1  TCTAAGAGTAAAATAAAATACACCGTCCCCCAAAAGCCATTCTCACCCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGTAAAATAAAATACACCGTCCCCCAAAAGCCATTCTCACCCAA  699

seq1  AAATCCACAATACGAGATGACAACGTGTGGAACCCTCTAGAATTGTCACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACAATACGAGATGACAACGTGTGGAACCCTCTAGAATTGTCACA  749

seq1  TGTTACTGAAGGAGTAATTATAACCCTGTGCCCACACAGCAAAACCACAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGAAGGAGTAATTATAACCCTGTGCCCACACAGCAAAACCACAC  799

seq1  AGAAGGTAATGATGGTGTGTGACACTGTTTTAAGAGCAGCCTTTTGCAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAATGATGGTGTGTGACACTGTTTTAAGAGCAGCCTTTTGCAAT  849

seq1  CAAAAAGCATTCCTATCCCTGCCTCCTGATTGGTTCTCATGGAGGCACCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCATTCCTATCCCTGCCTCCTGATTGGTTCTCATGGAGGCACCA  899

seq1  CACGGTTTCATAATATAACTTGAAGTTCATTTCTATCAACTTAGTTATGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTCATAATATAACTTGAAGTTCATTTCTATCAACTTAGTTATGT  949

seq1  GACACTAGGAATTC  957
      ||||||||||||||
seq2  GACACTAGGAATTC  963