BAC Information

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BAC

Clone NameB6Ng01-241A12
Chromosome10 (Build37)
Map Location 79,280,494 - 79,315,502
singlet/doubletdoublet
Overlap genePalm, 9130017N09Rik
Upstream geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1
Downstream genePtbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241A12.bB6Ng01-241A12.g
ACCGA051049GA051050
length1,0891,113
definitionB6Ng01-241A12.b B6Ng01-241A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,314,424 - 79,315,502)(79,280,494 - 79,281,592)
sequence
gaattcatatctcagactggccagcagtgattgtcctgtttccgaatcct
gtggtgaaatgacaggtctgtgcctctatgcctagccagagtgagttcaa
gaccaggttggtcaacatagtaaagagggcagggggagggggaacctctg
ctttgaaccccccaaagagggcctaggggtgtgtctccggggtggaaccc
cagcctagaattccccaatgagttgagtgtagctcaggggtggagcccca
gcctagaatgcctcagttaggggctgggagtatggctcagcattaggaca
ctggcccagcacacaggagatcctggcttcctttttcaaagctgccagag
catattttaaaaacgattaatgttctgtgttgctgctgtgatgcagcgcc
cacaatggactgcctctaacgtcacagatgtgagccttgcatctggagcc
cagaagtctgaggccgggctttgcacaggaagtgccttttctgtctccca
gattctggagctccaagtgtccgggacttgtgacagagtccctgtgtgtg
cttctgtcttcagactgtctcctactaaatccggcctggataatttcagt
ttcgggaccctgaactgcatctacaaagaacctttgtggtgctagggctg
gagctcactcccaccccgcccaactagacccgtgtttgctgctcactgat
cacgcccagggccccaaccatcgctggtcacagtaacccatctcaaggtt
gcgaatggcttaggaagcctgcaccccaaatgtcctcaagtgggctggct
tttgggagagaaccatggtttagtgagcagtcatttttactgcctccctg
tctctgcagaacacctgttggggaagaaaactgcattgtttagctcttcc
aacatggttggccctgactttgtctccaagcctgcccagcgcccacctca
gccttgccagctgctgctcatgaatgattgaaggtgaggaaggacagctc
acctgggcctttgtctgagaggcacactagcctgcttgttaccagggtaa
agtgaatacttcccctgtaaggaagagatggagccaggg
gaattctaagttggtctttctggctttcctgactggcattataggtgttt
aatggacggatctgtggggaagtgatgttgaggaaactagatacatctaa
tccgggacattttttagcaggaaccataaagtcaaattggtccccacccc
atcccttttttaaagaaataaatacataccatataattctcctttttaca
gtttgtgatttaggaggtttggcccctggtgtacagtaattttatatact
ttcagaacattgcattaccccaaaggaagtccccaccccaacaagctatc
gcccgttccattacacccatgaacacacacacacacacacacacacacac
acacacagagtctcaggattgcactttcacacagttcctatcacggagat
ccccactatgtggccttttgtgtctgggtttctcactgagcaaacgcggt
gtccttaaggtccctccatgctatgtgtgtgtcagagagtgtggaaggac
tgtgctgtgtatgtttagtactgggcatgtttctgtgtgcacacatgctt
tatctcgggtgtaactgacgtgggacttgctggccccagtggatgtgact
gtttatgaaggacagcaaggctgatgatatccattgccactcccagagtg
actccacagggctccaccctgggccatttccacccacctctgcacagtct
ctctggggacccagaaccagctagactggaccctggttgcttggtaacag
caggagatctgtttccgtggagactgatggcttgaattctcatcttagag
gcccaggcccatgggagagattcgaccccaccttctgccacctccagtgt
caccaagagaccaggccacagggactcttcctccagggggttgggaagct
aacatctgaagggtggtagccctgaaccttcaataagaattcctggaacc
acccctatcttgcgcctcctgaaagtctaggatcccagaagagtttgcca
gagcctgagtcaaggtgtgctcctgggctgtagaacagctgttcccgtcc
gtgaggaagacatttgtctatttagatcctcataactcagaaatgtgaag
ccaaggcctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79314424_79315502
seq2: B6Ng01-241A12.b_45_1133 (reverse)

seq1  CCCTGCCTCCATCTCCTCC-TACAGGGG-AGTA-TCACTTT-CCCTGGTA  46
      ||||| ||||||||| ||| |||||||| |||| ||||||| ||||||||
seq2  CCCTGGCTCCATCTCTTCCTTACAGGGGAAGTATTCACTTTACCCTGGTA  50

seq1  ACAAGCAGGCTAGTGTGCCTCTCAGACAAAGG-CCAGGTGAGCTGTCCCT  95
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  ACAAGCAGGCTAGTGTGCCTCTCAGACAAAGGCCCAGGTGAGCTGTCCTT  100

seq1  CCTCACC-TCAATCATTCATGAGCAGCAGCTGGCAAGGCTGAGGTGGGCG  144
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTTCAATCATTCATGAGCAGCAGCTGGCAAGGCTGAGGTGGGCG  150

seq1  CTGGGCAGGC-TGGAGACAAAGTCA-GGCCAACCATG-TGGAAGAGCTAA  191
      |||||||||| |||||||||||||| ||||||||||| ||||||||||||
seq2  CTGGGCAGGCTTGGAGACAAAGTCAGGGCCAACCATGTTGGAAGAGCTAA  200

seq1  ACAATGCAG-TGTCTTCCCCAACAGGTGTTCTGCAGAGACAGGGAGGCAG  240
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGTTTTCTTCCCCAACAGGTGTTCTGCAGAGACAGGGAGGCAG  250

seq1  TAAAAATGACTGCTCACTAAACCATGGTTCTCTCCCAAAAGCCAGCCCAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGACTGCTCACTAAACCATGGTTCTCTCCCAAAAGCCAGCCCAC  300

seq1  TTGAGGACATTTGGGGTGCAGGCTTCCTAAGCCATTCGCAACCTTGAGAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACATTTGGGGTGCAGGCTTCCTAAGCCATTCGCAACCTTGAGAT  350

seq1  GGGTTACTGTGACCAGCGATGGTTGGGGCCCTGGGCGTGATCAGTGAGCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTGTGACCAGCGATGGTTGGGGCCCTGGGCGTGATCAGTGAGCA  400

seq1  GCAAACACGGGTCTAGTTGGGCGGGGTGGGAGTGAGCTCCAGCCCTAGCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACGGGTCTAGTTGGGCGGGGTGGGAGTGAGCTCCAGCCCTAGCA  450

seq1  CCACAAAGGTTCTTTGTAGATGCAGTTCAGGGTCCCGAAACTGAAATTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGTTCTTTGTAGATGCAGTTCAGGGTCCCGAAACTGAAATTAT  500

seq1  CCAGGCCGGATTTAGTAGGAGACAGTCTGAAGACAGAAGCACACACAGGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGGATTTAGTAGGAGACAGTCTGAAGACAGAAGCACACACAGGG  550

seq1  ACTCTGTCACAAGTCCCGGACACTTGGAGCTCCAGAATCTGGGAGACAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCACAAGTCCCGGACACTTGGAGCTCCAGAATCTGGGAGACAGA  600

seq1  AAAGGCACTTCCTGTGCAAAGCCCGGCCTCAGACTTCTGGGCTCCAGATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTCCTGTGCAAAGCCCGGCCTCAGACTTCTGGGCTCCAGATG  650

seq1  CAAGGCTCACATCTGTGACGTTAGAGGCAGTCCATTGTGGGCGCTGCATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCACATCTGTGACGTTAGAGGCAGTCCATTGTGGGCGCTGCATC  700

seq1  ACAGCAGCAACACAGAACATTAATCGTTTTTAAAATATGCTCTGGCAGCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAACACAGAACATTAATCGTTTTTAAAATATGCTCTGGCAGCT  750

seq1  TTGAAAAAGGAAGCCAGGATCTCCTGTGTGCTGGGCCAGTGTCCTAATGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGGAAGCCAGGATCTCCTGTGTGCTGGGCCAGTGTCCTAATGC  800

seq1  TGAGCCATACTCCCAGCCCCTAACTGAGGCATTCTAGGCTGGGGCTCCAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATACTCCCAGCCCCTAACTGAGGCATTCTAGGCTGGGGCTCCAC  850

seq1  CCCTGAGCTACACTCAACTCATTGGGGAATTCTAGGCTGGGGTTCCACCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTACACTCAACTCATTGGGGAATTCTAGGCTGGGGTTCCACCC  900

seq1  CGGAGACACACCCCTAGGCCCTCTTTGGGGGGTTCAAAGCAGAGGTTCCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGACACACCCCTAGGCCCTCTTTGGGGGGTTCAAAGCAGAGGTTCCC  950

seq1  CCTCCCCCTGCCCTCTTTACTATGTTGACCAACCTGGTCTTGAACTCACT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTGCCCTCTTTACTATGTTGACCAACCTGGTCTTGAACTCACT  1000

seq1  CTGGCTAGGCATAGAGGCACAGACCTGTCATTTCACCACAGGATTCGGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGGCATAGAGGCACAGACCTGTCATTTCACCACAGGATTCGGAA  1050

seq1  ACAGGACAATCACTGCTGGCCAGTCTGAGATATGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAATCACTGCTGGCCAGTCTGAGATATGAATTC  1089

seq1: chr10_79280494_79281592
seq2: B6Ng01-241A12.g_69_1181

seq1  GAATTCTAAGTTGGTCTTTCTGGCTTTCCTGACTGGCATTATAGGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTTGGTCTTTCTGGCTTTCCTGACTGGCATTATAGGTGTTT  50

seq1  AATGGACGGATCTGTGGGGAAGTGATGTTGAGGAAACTAGATACATCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACGGATCTGTGGGGAAGTGATGTTGAGGAAACTAGATACATCTAA  100

seq1  TCCGGGACATTTTTTAGCAGGAACCATAAAGTCAAATTGGTCCCCACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGACATTTTTTAGCAGGAACCATAAAGTCAAATTGGTCCCCACCCC  150

seq1  ATCCCTTTTTTAAAGAAATAAATACATACCATATAATTCTCCTTTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTTTTAAAGAAATAAATACATACCATATAATTCTCCTTTTTACA  200

seq1  GTTTGTGATTTAGGAGGTTTGGCCCCTGGTGTACAGTAATTTTATATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGATTTAGGAGGTTTGGCCCCTGGTGTACAGTAATTTTATATACT  250

seq1  TTCAGAACATTGCATTACCCCAAAGGAAGTCCCCACCCCAACAAGCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACATTGCATTACCCCAAAGGAAGTCCCCACCCCAACAAGCTATC  300

seq1  GCCCGTTCCATTACACCCATGAACACACACACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTCCATTACACCCATGAACACACACACACACACACACACACACAC  350

seq1  ACACACAGAGTCTCAGGATTGCACTTTCACACAGTTCCTATCACGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGTCTCAGGATTGCACTTTCACACAGTTCCTATCACGGAGAT  400

seq1  CCCCACTATGTGGCCTTTTGTGTCTGGGTTTCTCACTGAGCAAACGCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTATGTGGCCTTTTGTGTCTGGGTTTCTCACTGAGCAAACGCGGT  450

seq1  GTCCTTAAGGTCCCTCCATGCTATGTGTGTGTCAGAGAGTGTGGAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAGGTCCCTCCATGCTATGTGTGTGTCAGAGAGTGTGGAAGGAC  500

seq1  TGTGCTGTGTATGTTTAGTACTGGGCATGTTTCTGTGTGCACACATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGTATGTTTAGTACTGGGCATGTTTCTGTGTGCACACATGCTT  550

seq1  TATCTCGGGTGTAACTGACGTGGGACTTGCTGGCCCCAGTGGATGTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGGGTGTAACTGACGTGGGACTTGCTGGCCCCAGTGGATGTGACT  600

seq1  GTTTATGAAGGACAGCAAGGCTGATGATATCCATTGCCACTCCCAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAAGGACAGCAAGGCTGATGATATCCATTGCCACTCCCAGAGTG  650

seq1  ACTCCACAGGGCTCCACCCTGGGCCA-TTCCACCCACCTCTGCACAGTCT  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTCCACAGGGCTCCACCCTGGGCCATTTCCACCCACCTCTGCACAGTCT  700

seq1  CTCTGGGGACCCAGAACCAGCTAGACTGGACCCTGGTTGCTTGGTAACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGACCCAGAACCAGCTAGACTGGACCCTGGTTGCTTGGTAACAG  750

seq1  CAGGAGATCTGTTTCCGTGGAGACTGATGGCTTGAATTCTCATCTTAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATCTGTTTCCGTGGAGACTGATGGCTTGAATTCTCATCTTAGAG  800

seq1  GCCCAGGCCCATGGGAGAGATTCGACCCCACCTTCTG-CACCTCCAGTGT  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCCAGGCCCATGGGAGAGATTCGACCCCACCTTCTGCCACCTCCAGTGT  850

seq1  CACCAAGAGACCAGG-CACAGGGACTCTT-CTCCA-GGGGTTGGGAAGCT  895
      ||||||||||||||| ||||||||||||| ||||| ||||||||||||||
seq2  CACCAAGAGACCAGGCCACAGGGACTCTTCCTCCAGGGGGTTGGGAAGCT  900

seq1  AACATCTG-AGGGTGGTAGCCCTGACCCTTCATTA--GATTCCTGGAACC  942
      |||||||| |||||||||||||||| |||||| ||   ||||||||||||
seq2  AACATCTGAAGGGTGGTAGCCCTGAACCTTCAATAAGAATTCCTGGAACC  950

seq1  A-CCCTATC-TGCGCCTCCTG-AAGTCTAGGATCCCAGAGGAGTTTG-CA  988
      | ||||||| ||||||||||| ||||||||||||||||| ||||||| ||
seq2  ACCCCTATCTTGCGCCTCCTGAAAGTCTAGGATCCCAGAAGAGTTTGCCA  1000

seq1  GAG-CTGAGGTTCAGGTGTGCTCTGGGGCTGTAG-ACAGCTGTTCCCGTC  1036
      ||| |||| ||  ||||||||||  ||||||||| |||||||||||||||
seq2  GAGCCTGA-GTCAAGGTGTGCTCCTGGGCTGTAGAACAGCTGTTCCCGTC  1049

seq1  GGTGAGG-AGACA-TTGTCCTTATTTAGATCCTCATAACTCAGAAA-GTG  1083
       |||||| ||||| |||||  ||||||||||||||||||||||||| |||
seq2  CGTGAGGAAGACATTTGTC--TATTTAGATCCTCATAACTCAGAAATGTG  1097

seq1  ACAGCC-AGGCCTGATA  1099
      | |||| ||||||||||
seq2  A-AGCCAAGGCCTGATA  1113