BAC Information

Click to search

BAC

Clone NameB6Ng01-241C24
Chromosome10 (Build37)
Map Location 111,017,501 - 111,204,350
singlet/doubletdoublet
Overlap genenone
Upstream gene9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241C24.bB6Ng01-241C24.g
ACCGA051167GA051168
length1,118985
definitionB6Ng01-241C24.b B6Ng01-241C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,017,501 - 111,018,628)(111,203,361 - 111,204,350)
sequence
gaattcctaccagacaggcactttgctctttaggtagtgcacttgatggc
tatctctgcgtgtaaacttcccgtgccttcggcatctcctgtctctgcga
ccagatgaagcttacttgcttcgttccttttttcccctggtctccttccc
ctcacatctaacgaatcaccaagggatactaatcttactaccccaagctt
gttaagtgttttacatggggtaaatgcttgttaggacagagcaaaacagt
gcagaggttcctccatcttgtattctttctgaggtcatctgaggtttaac
tagaatcttatctctttgatggagaatcccatgaaaaactacccaactct
attctaggaatcaaaggtcagggcattctagctaatttatcttagccttt
gttaaaattggttgtttgtacggaacctcctctagctaaccatttatctt
ggctgcccgtttgtgctgtgacctccccaccccctttggctggctggcta
accacttatcttagcttctgctaaaactgtttgcttccaactgcttaatc
tacaaaacatcccatacccccacctccatgcgatggctatatgaagtgtc
tgcctttaaaaaaccctgtgttctggagacttgaggtcacaaccgggtcc
cccccaaattcttgggtgtggtccgagccactggaataaagactttgaat
tggctaaactttgtgtctgagtggtcatctctggcaagctccctgtcaca
ctgccatagccacgagggtcattctgccaccggtctagtgcgcactgatt
ccttccccactcccgagcacagggccatgtcactgtaacctgtagtcctt
gcatagctctgttcctccaggattacaaggaacttggtaccaacgggtaa
agccgtgttggtaagggtcactgcccttccaggcccttctttctattatc
cttcacccatactctaccctctaactcccatattaattttttttaaagag
tattttttagcctcgaaatgggtgcagatgctgctcttttcatgagatgt
catcccttccctcctctttaagcatcgatgacttgagtcaggttcacatc
ttctagaaagtcttctga
gaattccacagaaagaaatgcttccatgactggctgagtcattctggaga
gatgtttccagtaagccacattatgctggatgctgttcaagagagaaaaa
cccaagcccactgagcttcagtgggctgtgtgggtgggtttactcgagta
caaacatcaaatacagccattggaacccgtatcctgggaaacaagagaac
ggctccccatcccaactgggattttacaagttctattttagccaaataat
aaaaagtgaataaaaaaaatgggtgtaaattaaaaatgccccagtgacat
tcattgtattattttcccccctcagactcctgaaattgaaattggatgtt
ataaaattcaagcttcttttttgcaaaactttgatgtctctggtagactt
tcacatttctatttaaaaactgctgatgaacaccccacctacagcatgcc
ccccttcctttgtcagataaatagtcaccctggaaaggctgtgattatga
gattaaaaaatcatttgcattttataacttttctgtcaatttttccttac
aagagtaaaactataaacaatttgaatactaaatttcactctaacgtcaa
gaccatacacaatcaatcagctgaaaattggacactaaaatttccaatgt
tccaaagcacattgataaggaaccccaatttcattcatatcgctgtaatt
cagggtactgttgatgatgctgttgcagccaatttgctgttgaccaaata
gtacaccacttggtgagtccttttctttctctctttctctctttctctct
ttctctctttctttctttctttctttctttctttctttctttctttcttt
ctttcttccttccttccttccttccttcttctctctctctctctctctct
ctctctctctctctctctcttcctttcctacagaaattaatttattcact
ttacatcctgatcactgctgccctctggtcacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111017501_111018628
seq2: B6Ng01-241C24.b_46_1163

seq1  GAATTCCTACCAGACAGGCACTTTGCTCTTTAGGTAGTGCACTTGATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAGACAGGCACTTTGCTCTTTAGGTAGTGCACTTGATGGC  50

seq1  TATCTCTGCGTGTAAACTTCCCGTGCCTTCGGCATCTCCTGTCTCTGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGCGTGTAAACTTCCCGTGCCTTCGGCATCTCCTGTCTCTGCGA  100

seq1  CCAGATGAAGCTTACTTGCTTCGTTCCTTTTTTCCCCTGGTCTCCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAAGCTTACTTGCTTCGTTCCTTTTTTCCCCTGGTCTCCTTCCC  150

seq1  CTCACATCTAACGAATCACCAAGGGATACTAATCTTACTACCCCAAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTAACGAATCACCAAGGGATACTAATCTTACTACCCCAAGCTT  200

seq1  GTTAAGTGTTTTACATGGGGTAAATGCTTGTTAGGACAGAGCAAAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGTTTTACATGGGGTAAATGCTTGTTAGGACAGAGCAAAACAGT  250

seq1  GCAGAGGTTCCTCCATCTTGTATTCTTTCTGAGGTCATCTGAGGTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTTCCTCCATCTTGTATTCTTTCTGAGGTCATCTGAGGTTTAAC  300

seq1  TAGAATCTTATCTCTTTGATGGAGAATCCCATGAAAAACTACCCAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTTATCTCTTTGATGGAGAATCCCATGAAAAACTACCCAACTCT  350

seq1  ATTCTAGGAATCAAAGGTCAGGGCATTCTAGCTAATTTATCTTAGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAATCAAAGGTCAGGGCATTCTAGCTAATTTATCTTAGCCTTT  400

seq1  GTTAAAATTGGTTGTTTGTACGGAACCTCCTCTAGCTAACCATTTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTGGTTGTTTGTACGGAACCTCCTCTAGCTAACCATTTATCTT  450

seq1  GGCTGCCCGTTTGTGCTGTGACCTCCCCACCCCCTTTGGCTGGCTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCGTTTGTGCTGTGACCTCCCCACCCCCTTTGGCTGGCTGGCTA  500

seq1  ACCACTTATCTTAGCTTCTGCTAAAACTGTTTGCTTCCAACTGCTTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTATCTTAGCTTCTGCTAAAACTGTTTGCTTCCAACTGCTTAATC  550

seq1  TACAAAACATCCCATACCCCCACCTCCATGCGATGGCTATATGAAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACATCCCATACCCCCACCTCCATGCGATGGCTATATGAAGTGTC  600

seq1  TGCCTTTAAAAAACCCTGTGTTCTGGAGACTTGAGGTCACAACCGGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAAAAAACCCTGTGTTCTGGAGACTTGAGGTCACAACCGGGTCC  650

seq1  CCCCCAAATTCTTGGGTGTGGTCCGAGCCACTGGAATAAAGACTTTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATTCTTGGGTGTGGTCCGAGCCACTGGAATAAAGACTTTGAAT  700

seq1  TGGCTAAACTTTGTGTCTGAGTGGTCATCTCTGGCAAGCTCCCTGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAACTTTGTGTCTGAGTGGTCATCTCTGGCAAGCTCCCTGTCACA  750

seq1  CTGCCATAGCCACGAGGGTCATTCTGCCACCGGTCTAGTGCGCACTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAGCCACGAGGGTCATTCTGCCACCGGTCTAGTGCGCACTGATT  800

seq1  CCTTCCCCACTCCCGAGCACAGGGCCATGTCACTGTAACCTGTAGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCACTCCCGAGCACAGGGCCATGTCACTGTAACCTGTAGTCCTT  850

seq1  GCATAGCTCTGTTCCTCCAGGATTACAAAGGAACTTGGTACCAACGGGTA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCATAGCTCTGTTCCTCCAGGATTAC-AAGGAACTTGGTACCAACGGGTA  899

seq1  AAGCCGTGTTGGTAAGGGTCACTGCCCTTCCAGGCCCTTCTTTCTATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTGTTGGTAAGGGTCACTGCCCTTCCAGGCCCTTCTTTCTATTAT  949

seq1  CCTTCACCCCATACTCTACCCTCTAACTCCCATATTAATTTTTTTTAAAG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCA-CCCATACTCTACCCTCTAACTCCCATATTAATTTTTTTTAAAG  998

seq1  GAAGTATTTTTTAAGCCTCGAAATGGGTGCAGATGCTGCTCTTTTCAATG  1050
        |||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  --AGTATTTTTT-AGCCTCGAAATGGGTGCAGATGCTGCTCTTTTC-ATG  1044

seq1  AAGATGTCATCCCTTCCCT-CTCTTTATAGCAATCGATGAACCTTGAGTC  1099
       |||||||||||||||||| ||||||| ||| ||||||||  ||||||||
seq2  -AGATGTCATCCCTTCCCTCCTCTTTA-AGC-ATCGATGA--CTTGAGTC  1089

seq1  AGGGTCACATCTTCTAGAAAGTCTTCTGA  1128
      ||| |||||||||||||||||||||||||
seq2  AGGTTCACATCTTCTAGAAAGTCTTCTGA  1118

seq1: chr10_111203361_111204350
seq2: B6Ng01-241C24.g_63_1047 (reverse)

seq1  GGGGTGACCAGGAGGGGCAGCAGTGATCAGGGTGTAAAGTGAATAAATAA  50
      |||||||||||   ||||||||||||||||| |||||||||||||||| |
seq2  GGGGTGACCAG--AGGGCAGCAGTGATCAGGATGTAAAGTGAATAAATTA  48

seq1  ATTTCAGTAAAGAAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||| ||  || |||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGT--AGGAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  96

seq1  GAGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAA-GAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAA  145

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAG  195

seq1  AGAGAAAGAGAGAAAGAAAAGGACTCACCAAGTGGTGTACTATTTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAGAAAGAAAAGGACTCACCAAGTGGTGTACTATTTGGTCA  245

seq1  ACAGCAAATTGGCTGCAACAGCATCATCAACAGTACCCTGAATTACAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATTGGCTGCAACAGCATCATCAACAGTACCCTGAATTACAGCG  295

seq1  ATATGAATGAAATTGGGGTTCCTTATCAATGTGCTTTGGAACATTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGAAATTGGGGTTCCTTATCAATGTGCTTTGGAACATTGGAAA  345

seq1  TTTTAGTGTCCAATTTTCAGCTGATTGATTGTGTATGGTCTTGACGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTCCAATTTTCAGCTGATTGATTGTGTATGGTCTTGACGTTAG  395

seq1  AGTGAAATTTAGTATTCAAATTGTTTATAGTTTTACTCTTGTAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTTAGTATTCAAATTGTTTATAGTTTTACTCTTGTAAGGAAAA  445

seq1  ATTGACAGAAAAGTTATAAAATGCAAATGATTTTTTAATCTCATAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGAAAAGTTATAAAATGCAAATGATTTTTTAATCTCATAATCAC  495

seq1  AGCCTTTCCAGGGTGACTATTTATCTGACAAAGGAAGGGGGGCATGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCCAGGGTGACTATTTATCTGACAAAGGAAGGGGGGCATGCTGT  545

seq1  AGGTGGGGTGTTCATCAGCAGTTTTTAAATAGAAATGTGAAAGTCTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGTGTTCATCAGCAGTTTTTAAATAGAAATGTGAAAGTCTACCA  595

seq1  GAGACATCAAAGTTTTGCAAAAAAGAAGCTTGAATTTTATAACATCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCAAAGTTTTGCAAAAAAGAAGCTTGAATTTTATAACATCCAAT  645

seq1  TTCAATTTCAGGAGTCTGAGGGGGGAAAATAATACAATGAATGTCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCAGGAGTCTGAGGGGGGAAAATAATACAATGAATGTCACTGG  695

seq1  GGCATTTTTAATTTACACCCATTTTTTTTATTCACTTTTTATTATTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTAATTTACACCCATTTTTTTTATTCACTTTTTATTATTTGGC  745

seq1  TAAAATAGAACTTGTAAAATCCCAGTTGGGATGGGGAGCCGTTCTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAACTTGTAAAATCCCAGTTGGGATGGGGAGCCGTTCTCTTGT  795

seq1  TTCCCAGGATACGGGTTCCAATGGCTGTATTTGATGTTTGTACTCGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGATACGGGTTCCAATGGCTGTATTTGATGTTTGTACTCGAGTA  845

seq1  AACCCACCCACACAGCCCACTGAAGCTCAGTGGGCTTGGGTTTTTCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCACACAGCCCACTGAAGCTCAGTGGGCTTGGGTTTTTCTCTC  895

seq1  TTGAACAGCATCCAGCATAATGTGGCTTACTGGAAACATCTCTCCAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGCATCCAGCATAATGTGGCTTACTGGAAACATCTCTCCAGAAT  945

seq1  GACTCAGCCAGTCATGGAAGCATTTCTTTCTGTGGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCCAGTCATGGAAGCATTTCTTTCTGTGGAATTC  985