BAC Information

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BAC

Clone NameB6Ng01-241D11
Chromosome10 (Build37)14 (Build37)
Map Location 111,017,501 - 111,018,64353,235,026 - 53,235,083
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D11.bB6Ng01-241D11.g
ACCGA051189GA051190
length1,13855
definitionB6Ng01-241D11.b B6Ng01-241D11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,017,501 - 111,018,643)(53,235,026 - 53,235,083)
sequence
gaattcctaccagacaggcactttgctctttaggtagtgcacttgatggc
tatctctgcgtgtaaacttcccgtgccttcggcatctcctgtctctgcga
ccagatgaagcttacttgcttcgttccttttttcccctggtctccttccc
ctcacatctaacgaatcaccaagggatactaatcttactaccccaagctt
gttaagtgttttacatggggtaaatgcttgttaggacagagcaaaacagt
gcagaggttcctccatcttgtattctttctgaggtcatctgaggtttaac
tagaatcttatctctttgatggagaatcccatgaaaaactacccaactct
attctaggaatcaaaggtcagggcattctagctaatttatcttagccttt
gttaaaattggttgtttgtacggaacctcctctagctaaccatttatctt
ggctgcccgtttgtgctgtgacctccccaccccctttggctggctggcta
accacttatcttagcttctgctaaaactgtttgcttccaactgcttaatc
tacaaaacatcccatacccccacctccatgcgatggctatatgaagtgtc
tgcctttaaaaaaccctgtgttctggagacttgaggtcacaaccgggtcc
cccccaaattcttgggtgtggtccgagccactggaataaagactttgaat
tggctaaactttgtgtctgagtggtcatctctggcaagctccctgtcaca
ctgccatagccacgagggtcattctgccaccggtctagtgcgcactgatt
ccttccccactcccgagcacagggccatgtcactgtaacctgtagtcctt
gcatagctctgtttcctccaggattacaaaggaacttggtaccaacgggt
aaagccgtgttggtaagggtcactgcccttccaggcccttcttttctatt
atccttcaccccatactctaccctctaactcccatattaattttttttaa
agggagtattttttaagcctcggaaatgggtgcagatgctgctcttttca
tggagatgtcatcctcctctctttatagcatcgatgactgagtcaaggtc
acattcttcttggaagtcttctgacctcaggacccaca
atcattttttaaaattttattttatttttgttttttacactccatattcc
attcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111017501_111018643
seq2: B6Ng01-241D11.b_48_1185

seq1  GAATTCCTACCAGACAGGCACTTTGCTCTTTAGGTAGTGCACTTGATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAGACAGGCACTTTGCTCTTTAGGTAGTGCACTTGATGGC  50

seq1  TATCTCTGCGTGTAAACTTCCCGTGCCTTCGGCATCTCCTGTCTCTGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGCGTGTAAACTTCCCGTGCCTTCGGCATCTCCTGTCTCTGCGA  100

seq1  CCAGATGAAGCTTACTTGCTTCGTTCCTTTTTTCCCCTGGTCTCCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAAGCTTACTTGCTTCGTTCCTTTTTTCCCCTGGTCTCCTTCCC  150

seq1  CTCACATCTAACGAATCACCAAGGGATACTAATCTTACTACCCCAAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTAACGAATCACCAAGGGATACTAATCTTACTACCCCAAGCTT  200

seq1  GTTAAGTGTTTTACATGGGGTAAATGCTTGTTAGGACAGAGCAAAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGTTTTACATGGGGTAAATGCTTGTTAGGACAGAGCAAAACAGT  250

seq1  GCAGAGGTTCCTCCATCTTGTATTCTTTCTGAGGTCATCTGAGGTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTTCCTCCATCTTGTATTCTTTCTGAGGTCATCTGAGGTTTAAC  300

seq1  TAGAATCTTATCTCTTTGATGGAGAATCCCATGAAAAACTACCCAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTTATCTCTTTGATGGAGAATCCCATGAAAAACTACCCAACTCT  350

seq1  ATTCTAGGAATCAAAGGTCAGGGCATTCTAGCTAATTTATCTTAGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAATCAAAGGTCAGGGCATTCTAGCTAATTTATCTTAGCCTTT  400

seq1  GTTAAAATTGGTTGTTTGTACGGAACCTCCTCTAGCTAACCATTTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTGGTTGTTTGTACGGAACCTCCTCTAGCTAACCATTTATCTT  450

seq1  GGCTGCCCGTTTGTGCTGTGACCTCCCCACCCCCTTTGGCTGGCTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCGTTTGTGCTGTGACCTCCCCACCCCCTTTGGCTGGCTGGCTA  500

seq1  ACCACTTATCTTAGCTTCTGCTAAAACTGTTTGCTTCCAACTGCTTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTATCTTAGCTTCTGCTAAAACTGTTTGCTTCCAACTGCTTAATC  550

seq1  TACAAAACATCCCATACCCCCACCTCCATGCGATGGCTATATGAAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACATCCCATACCCCCACCTCCATGCGATGGCTATATGAAGTGTC  600

seq1  TGCCTTTAAAAAACCCTGTGTTCTGGAGACTTGAGGTCACAACCGGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAAAAAACCCTGTGTTCTGGAGACTTGAGGTCACAACCGGGTCC  650

seq1  CCCCCAAATTCTTGGGTGTGGTCCGAGCCACTGGAATAAAGACTTTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATTCTTGGGTGTGGTCCGAGCCACTGGAATAAAGACTTTGAAT  700

seq1  TGGCTAAACTTTGTGTCTGAGTGGTCATCTCTGGCAAGCTCCCTGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAACTTTGTGTCTGAGTGGTCATCTCTGGCAAGCTCCCTGTCACA  750

seq1  CTGCCATAGCCACGAGGGTCATTCTGCCACCGGTCTAGTGCGCACTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAGCCACGAGGGTCATTCTGCCACCGGTCTAGTGCGCACTGATT  800

seq1  CCTTCCCCACTCCCGAGCACAGGGCCATGTCACTGTAACCTGTAGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCACTCCCGAGCACAGGGCCATGTCACTGTAACCTGTAGTCCTT  850

seq1  GCATAGCTCTG-TTCCTCCAGGATTACAAAGGAACTTGGTACCAACGGGT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTCTGTTTCCTCCAGGATTACAAAGGAACTTGGTACCAACGGGT  900

seq1  AAAGCCGTGTTGGTAAGGGTCACTGCCCTTCCAGGCCCTTC-TTTCTATT  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGCCGTGTTGGTAAGGGTCACTGCCCTTCCAGGCCCTTCTTTTCTATT  950

seq1  ATCCTTCACCCCATACTCTACCCTCTAACTCCCATATTAATTTTTTTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCACCCCATACTCTACCCTCTAACTCCCATATTAATTTTTTTTAA  1000

seq1  AGGAAGTATTTTTTAAGCCTC-GAAATGGGTGCAGATGCTGCTCTTTTCA  1047
      ||| ||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AGGGAGTATTTTTTAAGCCTCGGAAATGGGTGCAGATGCTGCTCTTTTC-  1049

seq1  ATGAAGATGTCATCCCTTCCCTCTCTTTATAGCAATCGATGAACCTTGAG  1097
      ||| |||||||||||    |||||||||||||| ||||||||    ||||
seq2  ATGGAGATGTCATCC---TCCTCTCTTTATAGC-ATCGATGA---CTGAG  1092

seq1  TCAGGGTCACA-TCTTCTAGAAAGTCTTCTGACCTCCAGAACCCACA  1143
      ||| ||||||| |||||| | |||||||||||||| ||| |||||||
seq2  TCAAGGTCACATTCTTCTTGGAAGTCTTCTGACCT-CAGGACCCACA  1138

seq1: chr14_53235026_53235083
seq2: B6Ng01-241D11.g_76_127

seq1  ATTTTTTAAAAAAATTTTATTTTATTTCCAATTTTTTTTACACTCCATAT  50
      |||||||   |||||||||||||||||    | |||||||||||||||||
seq2  ATTTTTT---AAAATTTTATTTTATTT---TTGTTTTTTACACTCCATAT  44

seq1  TCCATTCC  58
      ||||||||
seq2  TCCATTCC  52