BAC Information

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BAC

Clone NameB6Ng01-242D06
Chromosome10 (Build37)
Map Location 111,839,768 - 111,840,893
singlet/doubletsinglet
Overlap geneKcnc2
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D06.bB6Ng01-242D06.g
ACCGA051910GA051911
length1,1991,128
definitionB6Ng01-242D06.b B6Ng01-242D06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattatttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttctgtcttattgacggtgtcttttgtcttacagaagttttgcaatttta
taaggtcccatttgtcaattcttgatcttacagcacaagccattactgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaggtggagttccttag
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgaaaaccgccagttttgccagcacgatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgcgggggttcatttctgggtcttcaatgctattccattgg
tctactagtctgtcgctataccagtaccatgcagtttttgtcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatctttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttggagattgtcctttctaattctttgaataattgagttggaatttt
gatggggattgcattgaatctgtagatcaattttggcaagatagccattt
ttactatattgttcctgccaatccatgagcatgggagatcttttcatctt
ctgagatctttaatttctttctttagagatttgaagtttttatcatacag
ctctttcacttcctgagttagagtcacgccaaggtattttatattattat
gactattgagaaggtgttgttcccctaatttctttctcagcctgtttatt
ctttgtgtagagaaagccattgacttgttttgagttaattttatatcagc
tacttcatgaaccttgttcattcaggttaagagtctctggtggaatttta
gggtcacttatagtatacctatccatatcgtctgcgaagggaaccttggc
tcttctttcagtttgaatacgcttgaatcacactcttttggtgtgccta
gaattcttcttaccactcacctgtcagtctcctaacatttgtagcatttt
tgcaagagcccacattttgacattttcttgagttctctgtactcttggtg
cctcatctcgattctcctgctctccttcataactattttatgtcttggtt
tatttcatgccctggaatagtttcctacttttttcagtttattgatttag
gatttttattatgctacagaggaaataaatgaaaatgattaaaagagagt
ttctttcctccatctgatattcaattattcatccacatatttatccactt
gactatatttaaagtctggccttccattacattgaatggatctctctctc
tctctctctcctttccctccttccttctttccttccatttttcaatgagc
caccaaatctttggcctattcagtcctataacaggtggatcaatttatat
aattcataaatttatatacttcagtctagcactccaagttccattttgcc
tttaaccctgaattatattttccatagactattaaaatcattatattttg
gctcatttttaagtgggaaactaaaatgatttcatgggttttcctctaag
gcttgcaaagtcatccctttggaagagatagcatctttgggatgtgacga
aacagatgcaggtatcttgttcagttattaaatgaccttagctactttgc
taaataacatcaaattgcttagatttcttctcttgaccatagttaatatt
gttgattcctctttcacaggaatgttactgtaaacagactttatttgtga
tcccaccatccagagaaatctattgcaagtaagaagatggtgactcaaaa
tgaaacctcatttgagaaccaagttaagactggatttggcaaaatggtga
aataattgagtaatatatagactaggttttactcttccctacaagataaa
caatctgcattttgatcggctccctctattttctacaaacacaatggaca
aagccatttgcatttacatatcgcacagccaatcacttctatagcatgtg
acctcttgtcaacctaatttcattggacaatgaacaccacaattcaaatc
tctggcatctattaagatttttcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111839768_111840893
seq2: B6Ng01-242D06.g_68_1195 (reverse)

seq1  AAACTG-AATATCTT-ATAGATGCCAGAGA-TTGAATTGT-GTGTTCATT  46
      |||||| || ||||| |||||||||||||| ||||||||| |||||||||
seq2  AAACTGAAAAATCTTAATAGATGCCAGAGATTTGAATTGTGGTGTTCATT  50

seq1  TGTCAATGAAAATTAGTTTGACAAGA-GTCACATGCTATAGAGTTGATTG  95
         ||||| ||||||| ||||||||| |||||||||||||||  ||||||
seq2  GTCCAATG-AAATTAGGTTGACAAGAGGTCACATGCTATAGAAGTGATTG  99

seq1  GCTGTTGCGATATGTAAATGCAAATGGGCTTTGTCCATTGTGTTTGTAGA  145
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTG-TGCGATATGTAAATGCAAAT-GGCTTTGTCCATTGTGTTTGTAGA  147

seq1  AAATAGAGGGAGCCGATCAAAATGCAGATTGTTTATCTTGTAGGGAAGAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGGGAGCCGATCAAAATGCAGATTGTTTATCTTGTAGGGAAGAG  197

seq1  TAAAACCTAGTCTATATATTACTCAATTATTTCACCATTTTGCCAAATCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTAGTCTATATATTACTCAATTATTTCACCATTTTGCCAAATCC  247

seq1  AGTCTTAACTTGGTTCTCAAATGAGGTTTCATTTTGAGTCACCATCTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAACTTGGTTCTCAAATGAGGTTTCATTTTGAGTCACCATCTTCT  297

seq1  TACTTGCAATAGATTTCTCTGGATGGTGGGATCACAAATAAAGTCTGTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCAATAGATTTCTCTGGATGGTGGGATCACAAATAAAGTCTGTTT  347

seq1  ACAGTAACATTCCTGTGAAAGAGGAATCAACAATATTAACTATGGTCAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACATTCCTGTGAAAGAGGAATCAACAATATTAACTATGGTCAAG  397

seq1  AGAAGAAATCTAAGCAATTTGATGTTATTTAGCAAAGTAGCTAAGGTCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATCTAAGCAATTTGATGTTATTTAGCAAAGTAGCTAAGGTCAT  447

seq1  TTAATAACTGAACAAGATACCTGCATCTGTTTCGTCACATCCCAAAGATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACTGAACAAGATACCTGCATCTGTTTCGTCACATCCCAAAGATG  497

seq1  CTATCTCTTCCAAAGGGATGACTTTGCAAGCCTTAGAGGAAAACCCATGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTTCCAAAGGGATGACTTTGCAAGCCTTAGAGGAAAACCCATGA  547

seq1  AATCATTTTAGTTTCCCACTTAAAAATGAGCCAAAATATAATGATTTTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTAGTTTCCCACTTAAAAATGAGCCAAAATATAATGATTTTAA  597

seq1  TAGTCTATGGAAAATATAATTCAGGGTTAAAGGCAAAATGGAACTTGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGGAAAATATAATTCAGGGTTAAAGGCAAAATGGAACTTGGAG  647

seq1  TGCTAGACTGAAGTATATAAATTTATGAATTATATAAATTGATCCACCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACTGAAGTATATAAATTTATGAATTATATAAATTGATCCACCTG  697

seq1  TTATAGGACTGAATAGGCCAAAGATTTGGTGGCTCATTGAAAAATGGAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGACTGAATAGGCCAAAGATTTGGTGGCTCATTGAAAAATGGAAG  747

seq1  GAAAGAAGGAAGGAGGGAAAGGAGAGAGAGAGAGAGAGAGATCCATTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGAAGGAGGGAAAGGAGAGAGAGAGAGAGAGAGATCCATTCAA  797

seq1  TGTAATGGAAGGCCAGACTTTAAATATAGTCAAGTGGATAAATATGTGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGAAGGCCAGACTTTAAATATAGTCAAGTGGATAAATATGTGGA  847

seq1  TGAATAATTGAATATCAGATGGAGGAAAGAAACTCTCTTTTAATCATTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTGAATATCAGATGGAGGAAAGAAACTCTCTTTTAATCATTTT  897

seq1  CATTTATTTCCTCTGTAGCATAATAAAAATCCTAAATCAATAAACTGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCCTCTGTAGCATAATAAAAATCCTAAATCAATAAACTGAAA  947

seq1  AAAGTAGGAAACTATTCCAGGGCATGAAATAAACCAAGACATAAAATAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAAACTATTCCAGGGCATGAAATAAACCAAGACATAAAATAGT  997

seq1  TATGAAGGAGAGCAGGAGAATCGAGATGAGGCACCAAGAGTACAGAGAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGAGAGCAGGAGAATCGAGATGAGGCACCAAGAGTACAGAGAAC  1047

seq1  TCAAGAAAATGTCAAAATGTGGGCTCTTGCAAAAATGCTACAAATGTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAATGTCAAAATGTGGGCTCTTGCAAAAATGCTACAAATGTTAG  1097

seq1  GAGACTGACAGGTGAGTGGTAAGAAGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  GAGACTGACAGGTGAGTGGTAAGAAGAATTC  1128