BAC Information

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BAC

Clone NameB6Ng01-242E19
Chromosome10 (Build37)10 (Build37)
Map Location 81,226,955 - 81,227,68181,519,368 - 81,520,400
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944
Downstream geneEG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E19.bB6Ng01-242E19.g
ACCGA051982GA051983
length1,0421,036
definitionB6Ng01-242E19.b B6Ng01-242E19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,226,955 - 81,227,681)(81,519,368 - 81,520,400)
sequence
gaattctaagtacttgtgagaacacttcaagcaaagaaaccaagagactt
gtgacattagtttcttcaaaaagagaactgtgcttggaatgtgttttcat
gctcctttcagatatagcaaatagaaatgagtttactgtagattgttcat
tatttcttgctgctgttattcaattaaaagtttaatctatcttttctaca
cctctttggaaaagcaagtttttgccacctgcagcttgttcttgttattg
tataaagctgggactcataagtctctctcttgtgagcatcttcactgttt
ctccaaccagactctgtctagccctggatgtcctggaacttggtgtgtag
accaggatagactcgaactcggatccaccctattagccaaatttcctaca
gatcaacatgaagatgaactttcatgaagtaatgctatttagatgaatta
atgacttgatagaattcctaacttgattcaaataatttcaggaagaaagc
tgaagggttttagtcattttgccagaaagaagtaataaagttagaatcaa
gaatagaatgtgccaggcttggtggcgcacgcctttaatcccagcactcg
gaaggttgaggcagaggcaggcggatttctgagttcgaggccagcctggt
ctacaaagtgagttccaggacagtcagggctatacagagaaaccctgtct
caaaaaaacaaaaaacaaaaacaaaagaatagaatgtgccccctccatgt
agaataaaggctgcataataaggaactgcattgagcaacatgaattgcat
taagaagagaaacaggtttcagacaaacttgtaatcaaggaaaagcagca
ttcattctaggtcatgtccaaggatgaagccacaggtttgcagtatgata
aagcaaggccatgtgaaactgttgctttgaacttataatgagcttataaa
tgaaacatgctttgaacatactatcaacatccttccgcaactcccctttc
atatacatttacctatgaagtaaccttttcataaaagagagc
gaattcctgcatgatgtctctctcaccagtgacttggattgaacacacct
attctagatattctctcttccactcccgaccccgaatgtcaggtatctaa
ttgttgttctgataatgagaatggccactttcctggaagtcaagaaaatg
taaagttggcaaactctctttttagattttggtgcaatatggcaaactcc
tggtaccacttagaacatagctgcctccctgtcatgtaaactttgtatac
cataaatatctcaccattctgttccacatgtttgtataggggactaaaat
gggcactgcttgcttttctgtataatcataaaatgattgttccaaggagt
ggtcactgggttatcagcctcaggaagaggtacagacaacattgtcaaga
ccaattcctccttgcctgtgcaaatcaggtccactacctgcttgtgtgtc
accccttcaacatccatgccattcccttcctctagtccagaatcttacac
attgtttgattcaggaaagcgtgtgggaaagacggtgatgaacttcagga
tgtggtccccttgtacacatcagcctggtcagctgctcccactcccctgg
cagcatggcacccacatgcacttactcttggcaccaagcacatgtattga
cctttactcacatcatgagctttgaacttttgcataaggtcttatttttt
aagcaaatggcatgcattcctgaccttaatactgagtctccacaatcatt
ggcctgtagttgtttcacattctccctatctttatgtatgtttttgcttt
taaaaaaatgtgtatgagtcttttgcatatacacatatgtgtgcatgcaa
acacatgtacacaaatacataaatgtgtaccacttgtgtgcctagtgttt
actaaagtcagaagagaacattgggattctgttgacctggagttatgaat
ggttgggagcctcacatgagttgttggggactgacctccccgactatatc
ctaagtgttgaacctattttttctctctatggtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81226955_81227681
seq2: B6Ng01-242E19.b_43_849

seq1  GAATTCTAAGT-----------------------------------ACTT  15
      |||||||||||                                   ||||
seq2  GAATTCTAAGTACTTGTGAGAACACTTCAAGCAAAGAAACCAAGAGACTT  50

seq1  GTGACATTAGTTTCTTCAAAAAGAGAACTGTGCTTGGAATGTGTTTTCAT  65
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTAGTTTCTTCAAAAAGAGAACTGTGCTTGGAATGTGTTTTCAT  100

seq1  GCTCCTTTCATATATAGCAAATAGAAATGAGTTTACTGTAGATTGTTCAT  115
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCAGATATAGCAAATAGAAATGAGTTTACTGTAGATTGTTCAT  150

seq1  TATTTCTTGCTGCTGTTATTCAATTAAAAGTTTAAACTATCTTTTCTACA  165
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTTCTTGCTGCTGTTATTCAATTAAAAGTTTAATCTATCTTTTCTACA  200

seq1  CCTCTATGGAAAAGCAAGTTTTTGCCACCTGCAGCTTGTTCTTGTTATTG  215
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGGAAAAGCAAGTTTTTGCCACCTGCAGCTTGTTCTTGTTATTG  250

seq1  TATAAAGCCGGGACTCGTAAGTCTCACTCTTGTGAGCATCTTCACTGTTT  265
      |||||||| ||||||| |||||||| ||||||||||||||||||||||||
seq2  TATAAAGCTGGGACTCATAAGTCTCTCTCTTGTGAGCATCTTCACTGTTT  300

seq1  CTCCAACCAGACTCTGTCTAGCCCTGGATGTCCTGGAACTTGGTGTGTAG  315
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCAGACTCTGTCTAGCCCTGGATGTCCTGGAACTTGGTGTGTAG  350

seq1  ACCAGGATAGACTCGAACTCGGATCCACCCTATTAGCCAAATTTCCTACA  365
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATAGACTCGAACTCGGATCCACCCTATTAGCCAAATTTCCTACA  400

seq1  GATCAACATGAAGATGAACTTTCATGAAGTAATGCTATTTAGATGAATTA  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACATGAAGATGAACTTTCATGAAGTAATGCTATTTAGATGAATTA  450

seq1  ATGACTTGATAGAATTCCTAACTTGATTCAAATAATTTCAGGAAGAAAGC  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGATAGAATTCCTAACTTGATTCAAATAATTTCAGGAAGAAAGC  500

seq1  TGAAGGGTTTTAGTCATTTTGCCAGAAAGAAGTAATAAAGTTAGAATCAA  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTTTTAGTCATTTTGCCAGAAAGAAGTAATAAAGTTAGAATCAA  550

seq1  GAATAGAATGTGCCAGGCTTGGTGGCGCACACCTTTAATCCCAGAACTCG  565
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GAATAGAATGTGCCAGGCTTGGTGGCGCACGCCTTTAATCCCAGCACTCG  600

seq1  GAAGGCAGAGGCAGAGGAGGCAGAGGAGGCAGAGGCAGGCAGATTTCTGA  615
      ||||                  |  ||||||||||||||| |||||||||
seq2  GAAG------------------GTTGAGGCAGAGGCAGGCGGATTTCTGA  632

seq1  GTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTA  665
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTA  682

seq1  TACAG---------------------------------------------  670
      |||||                                             
seq2  TACAGAGAAACCCTGTCTCAAAAAAACAAAAAACAAAAACAAAAGAATAG  732

seq1  ------------CTAT-----ATAAAGGCTGCATAATAAGG-ACTGCATT  702
                  | ||     |||||||||||||||||||| ||||||||
seq2  AATGTGCCCCCTCCATGTAGAATAAAGGCTGCATAATAAGGAACTGCATT  782

seq1  GAGCAACATGAATTGCACTAAGAAG  727
      ||||||||||||||||| |||||||
seq2  GAGCAACATGAATTGCATTAAGAAG  807

seq1: chr10_81519368_81520400
seq2: B6Ng01-242E19.g_66_1101

seq1  GAATTCCTGCATGATGTCTCTCTCACCAGTGACTTGGATTGAACACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATGATGTCTCTCTCACCAGTGACTTGGATTGAACACACCT  50

seq1  ATTCTAGATATTCTCTCTTCCACTCCCGACCCCGAATGTCAGGTATCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATATTCTCTCTTCCACTCCCGACCCCGAATGTCAGGTATCTAA  100

seq1  TTGTTGTTCTGATAATGAGAATGGCCACTTTCCTGGAAGTCAAGAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTCTGATAATGAGAATGGCCACTTTCCTGGAAGTCAAGAAAATG  150

seq1  TAAAGTTGGCAAACTCTCTTTTTAGATTTTGGTGCAATATGGCAAACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGGCAAACTCTCTTTTTAGATTTTGGTGCAATATGGCAAACTCC  200

seq1  TGGTACCACTTAGAACATAGCTGCCTCCCTGTCATGTAAACTTTGTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCACTTAGAACATAGCTGCCTCCCTGTCATGTAAACTTTGTATAC  250

seq1  CATAAATATCTCACCATTCTGTTCCACATGTTTGTATAGGGGACTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATCTCACCATTCTGTTCCACATGTTTGTATAGGGGACTAAAAT  300

seq1  GGGCACTGCTTGCTTTTCTGTATAATCATAAAATGATTGTTCCAAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGCTTGCTTTTCTGTATAATCATAAAATGATTGTTCCAAGGAGT  350

seq1  GGTCACTGGGTTATCAGCCTCAGGAAGAGGTACAGACAACATTGTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGGTTATCAGCCTCAGGAAGAGGTACAGACAACATTGTCAAGA  400

seq1  CCAATTCCTCCTTGCCTGTGCAAATCAGGTCCACTACCTGCTTGTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCTCCTTGCCTGTGCAAATCAGGTCCACTACCTGCTTGTGTGTC  450

seq1  ACCCCTTCAACATCCATGCCATTCCCTTCCTCTAGTCCAGAATCTTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCAACATCCATGCCATTCCCTTCCTCTAGTCCAGAATCTTACAC  500

seq1  ATTGTTTGATTCAGGAAAGCGTGTGGGAAAGACGGTGATGAACTTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGATTCAGGAAAGCGTGTGGGAAAGACGGTGATGAACTTCAGGA  550

seq1  TGTGGTCCCCTTGTACACATCAGCCTGGTCAGCTGCTCCCACTCCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCCCTTGTACACATCAGCCTGGTCAGCTGCTCCCACTCCCCTGG  600

seq1  CAGCATGGCACCCACATGCACTTACTCTTGGCACCAAGCACATGTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCACCCACATGCACTTACTCTTGGCACCAAGCACATGTATTGA  650

seq1  CCTTTACTCACATCATGAGCTTTGAACTTTTGCATAAGGTCTTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTCACATCATGAGCTTTGAACTTTTGCATAAGGTCTTATTTTTT  700

seq1  AAGCAAATGGCATGCATTCCTGACCTTAATACTGAGTCTCCACAATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGGCATGCATTCCTGACCTTAATACTGAGTCTCCACAATCATT  750

seq1  GGCCTGTAGTTGTTTCACATTCTCCCTATCTTTATGTATGTTTTTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTAGTTGTTTCACATTCTCCCTATCTTTATGTATGTTTTTGCTTT  800

seq1  TAAAAAAATGTGTATGAGTCTTTTGCATATACACATATGTGTGCATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGTGTATGAGTCTTTTGCATATACACATATGTGTGCATGCAA  850

seq1  ACACATGTACACAAATACATAAATGTGTACCACTTGTGTGCCTAGTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTACACAAATACATAAATGTGTACCACTTGTGTGCCTAGTGTTT  900

seq1  ACTAAAGTCAGAAGAGAACATT-GGATTCTGTTGACCTGGAGTTATGAAT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTAAAGTCAGAAGAGAACATTGGGATTCTGTTGACCTGGAGTTATGAAT  950

seq1  GGTTGGGAGCCTCCACATGAG-TGTTGGGGACTGACGTCCCC-ACTTAAT  997
      |||||||||||| |||||||| |||||||||||||| ||||| |||  ||
seq2  GGTTGGGAGCCT-CACATGAGTTGTTGGGGACTGACCTCCCCGACTATAT  999

seq1  CCTAAGTGTTG-ACCCATTTTTCCTCTCTATGTTCCT  1033
      ||||||||||| ||| |||||| ||||||||| ||||
seq2  CCTAAGTGTTGAACCTATTTTTTCTCTCTATGGTCCT  1036