BAC Information

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BAC

Clone NameB6Ng01-244I06
Chromosome10 (Build37)
Map Location 37,396,511 - 37,532,109
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream geneLOC100040915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244I06.bB6Ng01-244I06.g
ACCGA053631GA053632
length1,1721,155
definitionB6Ng01-244I06.b B6Ng01-244I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,396,511 - 37,397,686)(37,530,947 - 37,532,109)
sequence
gaattctggctcttagtctgcggtccaaagcttaaattgtgttccaggca
aaaagtcaaaagaagttggaaaggactaacatctagccaagtcactctac
attctgctccatctaactagctagatctttgtcacatgactcttattaat
tgaaaaggaagctcagcatctagtttttcacattgttatgatactcttac
catacacaacagaaagtgatgttctccttgggaagaagagaagagcaaat
atggttgaggtatctctagtctgattacagtcattaatgcccacaacatc
tgataaacatcctatgactatgaattggttccaaaatttaaatattcata
aagtatccatttactgcaaaattagagaaacattttgttactctgctcca
tttaaactatttacatgaatacgaattctaagaaaattctgttgaaagat
gtatggataccaaaagtttttagaattcagctaatgaattatatattata
gaatatattttaagtgaatgtagtacatttaagtataaaggaattattat
aaattacttttacataattttgcatttatatcttaaagaactgtacacat
cagccttgtggtcttcagttactattcacttaataagacaaaatctgact
cattttaactaaagctaaattcctacttgtgctaagtcatcgtaaaatct
aacacagaaataagacttcgtatacattatctgcatcggtatatcacact
taaccttgaaacataagtgcaaatgttgcagtcacctaaaacttactttg
tatgtccattattgtaactcattatgtggaatacaagtttaggaagccaa
tactagagatagacttctcatcttgctatcattatttaatgttattatta
ctgttcattacagagcagaacaggatgacaaagcatttgaagagatgatg
tatacctttcataatctatatataggaaagaggtaacttggctattacat
tcttttatgttgacgcatagagtattattctcaaatattcatgacactac
tacccttgcctcccctcacccacatctcatatgcaattagcttaaaaaaa
atgatcaaactagtagcctcacctcatggaaagaaagctttttctgcact
cttgccaaaagtgtggattttc

gaattcaggcatgaaggcacttgattgtaaccataaaaaatagccttgtt
ttggttgtgaatgcttgataaataaaatggaaaactgcacgtcttcaagt
taatttctatactcccaatggccgtggttcacgtgggtttcattgcaagc
agattaatttttagtctgaaaatcaccagtagccagccaatcacatttcg
aaatcatgccttttagaagttttgaaatatatttttaaagcacacgtcag
aatcccctaggtttcccacaatctactgagagtaagaaccgtactttcca
caccatttcctgataacttcatgtgacacacagtaccacatgaattgcag
aagtgagatgacagactaggtaaccactcttttaaatgtcaccttggcct
caggtaccctctcatgtcagccaaacataaatatcaggctagaactgtga
tggtatggctttgtatttccccctttaaattctgtgtatatacagagaga
gagactgattaaaagaaactctaatgaggatattgcttcaaatctcactc
aactttctatcctctcactgatgaatcttagcaaactgaggagccagttc
tgttgacagcattttgaaaaagaaagcataagggtcacatttgattacac
tcctgctatttcactaatgacacggcagagaaaacattgtattcagccgg
atttcatgtctcaatactacctggtgatgctaattaaatgaaaaagaata
attcatcaaaatttaaaataaaattgcatcatgtcatttatctctagaga
aacaatgggtcaaaatcattgatggccaaaaagaagattattttcgtatg
ttttgctgatcacagtttttacatcacagctttcaacaaagtcagattct
cctaatgaagcatattttcaagaagcaactgaaagatgtgttctcttgaa
aagctaatttctgtcttgatacacataaactgagggggtcttgtgttctc
taacgagaggaaaacctttatcaaattataaaaaagatattcagctaaat
aaacctcagtagatctcaaaactttgtagattagcttaattactaaatca
gtgatatgtcttgatcaaatggatgcctatgaagagaacgatttgacttg
caaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37396511_37397686
seq2: B6Ng01-244I06.b_44_1215

seq1  GAATTCTGGCTCTTAGTCTGCGGTCCAAAGCTTAAATTGTGTTCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCTTAGTCTGCGGTCCAAAGCTTAAATTGTGTTCCAGGCA  50

seq1  AAAAGTCAAAAGAAGTTGGAAAGGACTAACATCTAGCCAAGTCACTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAAAAGAAGTTGGAAAGGACTAACATCTAGCCAAGTCACTCTAC  100

seq1  ATTCTGCTCCATCTAACTAGCTAGATCTTTGTCACATGACTCTTATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCCATCTAACTAGCTAGATCTTTGTCACATGACTCTTATTAAT  150

seq1  TGAAAAGGAAGCTCAGCATCTAGTTTTTCACATTGTTATGATACTCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGAAGCTCAGCATCTAGTTTTTCACATTGTTATGATACTCTTAC  200

seq1  CATACACAACAGAAAGTGATGTTCTCCTTGGGAAGAAGAGAAGAGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAACAGAAAGTGATGTTCTCCTTGGGAAGAAGAGAAGAGCAAAT  250

seq1  ATGGTTGAGGTATCTCTAGTCTGATTACAGTCATTAATGCCCACAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAGGTATCTCTAGTCTGATTACAGTCATTAATGCCCACAACATC  300

seq1  TGATAAACATCCTATGACTATGAATTGGTTCCAAAATTTAAATATTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACATCCTATGACTATGAATTGGTTCCAAAATTTAAATATTCATA  350

seq1  AAGTATCCATTTACTGCAAAATTAGAGAAACATTTTGTTACTCTGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCCATTTACTGCAAAATTAGAGAAACATTTTGTTACTCTGCTCCA  400

seq1  TTTAAACTATTTACATGAATACGAATTCTAAGAAAATTCTGTTGAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTATTTACATGAATACGAATTCTAAGAAAATTCTGTTGAAAGAT  450

seq1  GTATGGATACCAAAAGTTTTTAGAATTCAGCTAATGAATTATATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATACCAAAAGTTTTTAGAATTCAGCTAATGAATTATATATTATA  500

seq1  GAATATATTTTAAGTGAATGTAGTACATTTAAGTATAAAGGAATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTTTAAGTGAATGTAGTACATTTAAGTATAAAGGAATTATTAT  550

seq1  AAATTACTTTTACATAATTTTGCATTTATATCTTAAAGAACTGTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTTACATAATTTTGCATTTATATCTTAAAGAACTGTACACAT  600

seq1  CAGCCTTGTGGTCTTCAGTTACTATTCACTTAATAAGACAAAATCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTGGTCTTCAGTTACTATTCACTTAATAAGACAAAATCTGACT  650

seq1  CATTTTAACTAAAGCTAAATTCCTACTTGTGCTAAGTCATCGTAAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACTAAAGCTAAATTCCTACTTGTGCTAAGTCATCGTAAAATCT  700

seq1  AACACAGAAATAAGACTTCGTATACATTATCTGCATCGGTATATCACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAATAAGACTTCGTATACATTATCTGCATCGGTATATCACACT  750

seq1  TAACCTTGAAACATAAGTGCAAATGTTGCAGTCACCTAAAACTTACTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGAAACATAAGTGCAAATGTTGCAGTCACCTAAAACTTACTTTG  800

seq1  TATGTCCATTATTGTAACTCATTATGTGGAATACAAGTTTAGGAAGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCATTATTGTAACTCATTATGTGGAATACAAGTTTAGGAAGCCAA  850

seq1  TACTAGAGATAGACTTCTCATCTTGCTATCATTATTTAATGTTATTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAGATAGACTTCTCATCTTGCTATCATTATTTAATGTTATTATTA  900

seq1  CTGTTCATTACAGAGCAGAACAGGATGACAAAGCATTTGAAGAGATGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTACAGAGCAGAACAGGATGACAAAGCATTTGAAGAGATGATG  950

seq1  TATACC-TTCATAATCTATATATAGGAAAGAGGTAACTTGGCTATTACAT  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTCATAATCTATATATAGGAAAGAGGTAACTTGGCTATTACAT  1000

seq1  TC-TTTATGTTGACGCATAAGAAGTTAATTATTCTCAAATATTCATGAAC  1048
      || ||||||||||||||||   |||  |||||||||||||||||||| ||
seq2  TCTTTTATGTTGACGCATA--GAGT--ATTATTCTCAAATATTCATG-AC  1045

seq1  ACTACTAACCCTTGCCCTCACTCACCCACATCTCATAATGCCATTAGCTT  1098
      |||||| |||||||||  | |||||||||||||||| |||| ||||||||
seq2  ACTACT-ACCCTTGCCTCCCCTCACCCACATCTCAT-ATGCAATTAGCTT  1093

seq1  AAAAAAAATGATCAAACTTAGTAG-CTCA-CTCATGGAAAAGAGAGGTTT  1146
      ||||||||||||||||| |||||| |||| ||||||| ||||| | | ||
seq2  AAAAAAAATGATCAAAC-TAGTAGCCTCACCTCATGG-AAAGA-AAGCTT  1140

seq1  TTTCTTCACTCTTG-CAAAAGTG-GTATTTTC  1176
      ||||| |||||||| |||||||| | ||||||
seq2  TTTCTGCACTCTTGCCAAAAGTGTGGATTTTC  1172


seq1: chr10_37530947_37532109
seq2: B6Ng01-244I06.g_64_1218 (reverse)

seq1  TCTTGCAAGTTCCAATCTGTCCTCTTCATAGCTATCATTTTTGATC-AGA  49
      ||||||||| || |||| || ||||||||||  |||   ||||||| |||
seq2  TCTTGCAAG-TCAAATC-GTTCTCTTCATAGGCATC-CATTTGATCAAGA  47

seq1  CATATCAACTGATTTAAGTTAATTAGCTAAATCCTACAAAGTTTTTGAGA  99
      |||||| |||||||| ||| | | ||||||   |||||||| ||||||||
seq2  CATATC-ACTGATTT-AGTAATTAAGCTAA--TCTACAAAG-TTTTGAGA  92

seq1  TCTTACTGA-GTTTATTTAGCTG-ATATCTTTTTTTATAATTTTGATAAA  147
      || |||||| ||||||||||||| ||||| |||||||||| |||||||||
seq2  TC-TACTGAGGTTTATTTAGCTGAATATC-TTTTTTATAA-TTTGATAAA  139

seq1  GGTTTTCCTCTCCTTTAGAGAACACAAGA-CCCCTCAGTTTATGTGTATC  196
      ||||||||||| | ||||||||||||||| ||||||||||||||||||||
seq2  GGTTTTCCTCT-CGTTAGAGAACACAAGACCCCCTCAGTTTATGTGTATC  188

seq1  AAGACAGAAATTAGCTTTTCAAGAGAACACATCTTTCAGTTGCTTCTTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAATTAGCTTTTCAAGAGAACACATCTTTCAGTTGCTTCTTGA  238

seq1  AAATATGCTTCATTAGGAGAATCTGACTTTGTTGAAAGCTGTGATGTAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCTTCATTAGGAGAATCTGACTTTGTTGAAAGCTGTGATGTAAA  288

seq1  AACTGTGATCAGCAAAACATACGAAAATAATCTTCTTTTTGGCCATCAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGATCAGCAAAACATACGAAAATAATCTTCTTTTTGGCCATCAAT  338

seq1  GATTTTGACCCATTGTTTCTCTAGAGATAAATGACATGATGCAATTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGACCCATTGTTTCTCTAGAGATAAATGACATGATGCAATTTTAT  388

seq1  TTTAAATTTTGATGAATTATTCTTTTTCATTTAATTAGCATCACCAGGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTGATGAATTATTCTTTTTCATTTAATTAGCATCACCAGGTA  438

seq1  GTATTGAGACATGAAATCCGGCTGAATACAATGTTTTCTCTGCCGTGTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGACATGAAATCCGGCTGAATACAATGTTTTCTCTGCCGTGTCA  488

seq1  TTAGTGAAATAGCAGGAGTGTAATCAAATGTGACCCTTATGCTTTCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAATAGCAGGAGTGTAATCAAATGTGACCCTTATGCTTTCTTTT  538

seq1  TCAAAATGCTGTCAACAGAACTGGCTCCTCAGTTTGCTAAGATTCATCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGCTGTCAACAGAACTGGCTCCTCAGTTTGCTAAGATTCATCAG  588

seq1  TGAGAGGATAGAAAGTTGAGTGAGATTTGAAGCAATATCCTCATTAGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGATAGAAAGTTGAGTGAGATTTGAAGCAATATCCTCATTAGAGT  638

seq1  TTCTTTTAATCAGTCTCTCTCTCTGTATATACACAGAATTTAAAGGGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATCAGTCTCTCTCTCTGTATATACACAGAATTTAAAGGGGGA  688

seq1  AATACAAAGCCATACCATCACAGTTCTAGCCTGATATTTATGTTTGGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGCCATACCATCACAGTTCTAGCCTGATATTTATGTTTGGCTG  738

seq1  ACATGAGAGGGTACCTGAGGCCAAGGTGACATTTAAAAGAGTGGTTACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAGGGTACCTGAGGCCAAGGTGACATTTAAAAGAGTGGTTACCT  788

seq1  AGTCTGTCATCTCACTTCTGCAATTCATGTGGTACTGTGTGTCACATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCATCTCACTTCTGCAATTCATGTGGTACTGTGTGTCACATGAA  838

seq1  GTTATCAGGAAATGGTGTGGAAAGTACGGTTCTTACTCTCAGTAGATTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGGAAATGGTGTGGAAAGTACGGTTCTTACTCTCAGTAGATTGT  888

seq1  GGGAAACCTAGGGGATTCTGACGTGTGCTTTAAAAATATATTTCAAAACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCTAGGGGATTCTGACGTGTGCTTTAAAAATATATTTCAAAACT  938

seq1  TCTAAAAGGCATGATTTCGAAATGTGATTGGCTGGCTACTGGTGATTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGGCATGATTTCGAAATGTGATTGGCTGGCTACTGGTGATTTTC  988

seq1  AGACTAAAAATTAATCTGCTTGCAATGAAACCCACGTGAACCACGGCCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAAATTAATCTGCTTGCAATGAAACCCACGTGAACCACGGCCAT  1038

seq1  TGGGAGTATAGAAATTAACTTGAAGACGTGCAGTTTTCCATTTTATTTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTATAGAAATTAACTTGAAGACGTGCAGTTTTCCATTTTATTTAT  1088

seq1  CAAGCATTCACAACCAAAACAAGGCTATTTTTTATGGTTACAATCAAGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTCACAACCAAAACAAGGCTATTTTTTATGGTTACAATCAAGTG  1138

seq1  CCTTCATGCCTGAATTC  1163
      |||||||||||||||||
seq2  CCTTCATGCCTGAATTC  1155


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