BAC Information

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BAC

Clone NameB6Ng01-244N16
Chromosome10 (Build37)
Map Location 109,400,031 - 109,401,022
singlet/doubletsinglet
Overlap geneNav3
Upstream geneSyt1
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N16.bB6Ng01-244N16.g
ACCGA053888GA053889
length1,1921,048
definitionB6Ng01-244N16.b B6Ng01-244N16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaggattaaaacagggagatcttcgaggtcagggtcatctgg
gtttaaaggcgtggtggcacacaactttaatctgggccacaccctctgct
ggagacctacatagggacattggaggaaggaagatttacactctttctct
ccttcacctgtttgccttttgggactgagcaactgctagatccttggact
tccattcacagctgctgctgaccattgttgggagtgggactgcagactgt
aagtcatcaacaaattcctttactatagagactacccataggttctgtga
ctctagaaccctgactaatatacccgtgtaaggatgaggtgttaatttca
atgtggtgtgttaactaggtgacctaaaagggacttttgattgctggata
tcactactttgatagctggaccttggtagtcagcttcaggggaggaagtg
accaaataagggaatagaccttggtggctagctttaagaatgtaatctaa
gagtttaacagtaagaaacatccctccatgacctctgcatcagctcctgt
ttcctgacctgcttgagttccagtcctgacttcctttagtgatgaacagc
aacatggaagtgtgagctgaataaaccttttcctccccaacttgcttctt
ggtcatgatgtttgtgcagcaatagaaaccctgactaagacaatagcttc
tataactttattgttccctaaagtgatttttctcaaccttcctaatgctg
caaccctttaatacagctctgcctgttgtggtaacccacatctataaagc
tatttcattgttattctcatgactcataatgtaaatatctgtgttttcca
atggtcaagccccctccccaagggtatcattgagaaccactggtgtacag
ttagtctaggtattttcccagggatacttactttaagctagaataaactg
caatttctaaaagcaaccaaaagaacgttttcagactcagctgttatttg
ggtggcatgaattagttaacactgggacacttgcattatatttagacctg
ctttccatcttggagtgagaatacattaaggaaacagctgtctgaaccaa
tggtatgccagacagcagaactaataccttacctgggaataagatctaat
tcaattcttctgtaaacatttttccgtgtatctctctcatga
gaattcacatattcatttttcagtagtaaaatcaatataggaaaaaattt
gtgttcaaattcatccatactttcagcccaagttctttgcacatctttaa
tgaattgggtactgctctgagaatgaggcatccagtaatgtcttaaagga
aattacctcataagaagaagactgaaaataaaccaggtagtgtagggaca
ctaaaaatcagggtgtggggttgggaattaaagagtattaatttagatgg
gacaatttggatagaaaacaaagagctgaatcaacggtgcaccagcagag
tgaccagcaagagaagctctatgtgtgttttccatatgaagaatagtagg
ggaccagagatcaaaagggaggcctgaaggcaatgaggttgtgtggacct
gagtatcagaggttttccacagctatctctggcccagcctggtgcgagag
tcccagctaagggaagcaattgtgggcagggagggaggctgctgcagttg
gctccaccttggtctctgtcaggtcttccaggtttctctgttactccata
ctgtcctgccctgagttgggtcaggctgggccaatgagaggccaactagc
cagtgaggagtgcagcagggtttcaggcagcttatcagagctgacctttt
tccaagtgttacagctctttggacagaaggctcaggctgccaagtagttc
tccaacacccttaacccttcctgataggattcttatacacagcttggcct
gagtaagtgtctgacaacaggttacttctcattgttttgggtctgagagc
tttggggaaaccttatttgcatgtggggagggctttggtgcagctccctt
tgtgacttgatggcaacatacctctgtggttggactgtggggaggcttgt
ggctaacaggagcccaggacccaggaaggccttgtccgaacacctgctat
tcccaacagggaagaaattcacacccacctgagtcactgggggtttcaga
cctttgctcaccgggactctagctgtctttgcaactacttgtgcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109400031_109401022
seq2: B6Ng01-244N16.b_243_1239

seq1  GGACTTCCATTCACAGCTGCTGCTGACCATTGTTGGGAGTGGGACTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCATTCACAGCTGCTGCTGACCATTGTTGGGAGTGGGACTGCAG  50

seq1  ACTGTAAGTCATCAACAAATTCCTTTACTATAGAGACTACCCATAGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTCATCAACAAATTCCTTTACTATAGAGACTACCCATAGGTTC  100

seq1  TGTGACTCTAGAACCCTGACTAATATACCCGTGTAAGGATGAGGTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTAGAACCCTGACTAATATACCCGTGTAAGGATGAGGTGTTAA  150

seq1  TTTCAATGTGGTGTGTTAACTAGGTGACCTAAAAGGGACTTTTGATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTGGTGTGTTAACTAGGTGACCTAAAAGGGACTTTTGATTGCT  200

seq1  GGATATCACTACTTTGATAGCTGGACCTTGGTAGTCAGCTTCAGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCACTACTTTGATAGCTGGACCTTGGTAGTCAGCTTCAGGGGAGG  250

seq1  AAGTGACCAAATAAGGGAATAGACCTTGGTGGCTAGCTTTAAGAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCAAATAAGGGAATAGACCTTGGTGGCTAGCTTTAAGAATGTAA  300

seq1  TCTAAGAGTTTAACAGTAAGAAACATCCCTCCATGACCTCTGCATCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGTTTAACAGTAAGAAACATCCCTCCATGACCTCTGCATCAGCT  350

seq1  CCTGTTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTAGTGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTAGTGATGA  400

seq1  ACAGCAACATGGAAGTGTGAGCTGAATAAACCTTTTCCTCCCCAACTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACATGGAAGTGTGAGCTGAATAAACCTTTTCCTCCCCAACTTGC  450

seq1  TTCTTGGTCATGATGTTTGTGCAGCAATAGAAACCCTGACTAAGACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCATGATGTTTGTGCAGCAATAGAAACCCTGACTAAGACAATA  500

seq1  GCTTCTATAACTTTATTGTTCCCTAAAGTGATTTTTCTCAACCTTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATAACTTTATTGTTCCCTAAAGTGATTTTTCTCAACCTTCCTAA  550

seq1  TGCTGCAACCCTTTAATACAGCTCTGCCTGTTGTGGTAACCCACATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAACCCTTTAATACAGCTCTGCCTGTTGTGGTAACCCACATCTAT  600

seq1  AAAGCTATTTCATTGTTATTCTCATGACTCATAATGTAAATATCTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATTTCATTGTTATTCTCATGACTCATAATGTAAATATCTGTGTT  650

seq1  TTCCAATGGTCAAGCCCCCTCCCCAAGGGTATCATTGAGAACCACTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGGTCAAGCCCCCTCCCCAAGGGTATCATTGAGAACCACTGGTG  700

seq1  TACAGTTAGTCTAGGTA-TTTCCCAGGGATACTTAC-TTAAGCTAGAATA  748
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TACAGTTAGTCTAGGTATTTTCCCAGGGATACTTACTTTAAGCTAGAATA  750

seq1  AACTGCAA-TTCTAAAAGCAACCAAAAGAACGTTTTCAGACTCAGCTG-T  796
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AACTGCAATTTCTAAAAGCAACCAAAAGAACGTTTTCAGACTCAGCTGTT  800

seq1  ATTT-GGTGGCATGAATTAG-TAACACTGGGACACTTTGCATTATATTTA  844
      |||| ||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATTTGGGTGGCATGAATTAGTTAACACTGGGACAC-TTGCATTATATTTA  849

seq1  GACCTGC-TTCCATCTT-GAGTGAGAATAAAAATAAAGAAACAGTTGTCT  892
      ||||||| ||||||||| |||||||||| | | ||| ||||||| |||||
seq2  GACCTGCTTTCCATCTTGGAGTGAGAAT-ACATTAAGGAAACAGCTGTCT  898

seq1  GAAACAAATGGTATG-CAGACAGCAGACATAAATAAACTAAACTGGGATA  941
      | ||| ||||||||| |||||||||||  |||   | || | |||||| |
seq2  G-AACCAATGGTATGCCAGACAGCAGAACTAA--TACCTTACCTGGGA-A  944

seq1  TAAAGTTCTAATTTCAATTCTTCCTGTAAACATTTTCCTG-----GTTTC  986
      | ||| ||||| |||||||||| ||||||||||||| | |      | ||
seq2  T-AAGATCTAA-TTCAATTCTT-CTGTAAACATTTTTCCGTGTATCTCTC  991

seq1  TCATGA  992
      ||||||
seq2  TCATGA  997