BAC Information

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BAC

Clone NameB6Ng01-245F18
Chromosome10 (Build37)
Map Location 91,709,171 - 91,850,577
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245F18.bB6Ng01-245F18.g
ACCGA054263GA054264
length1,1521,075
definitionB6Ng01-245F18.b B6Ng01-245F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,849,435 - 91,850,577)(91,709,171 - 91,710,237)
sequence
gaattcttgtttcttaaatgcatttcatcgctgcttcttgaaaatatgtc
acagtcatcttggagaataatttcttttaaaaaacagagtaagaaggaaa
ttgcaacattcaatacctgttacagccccacagggaaaccgactaaatgc
tcatccattttcctctcaaggtgtatatttttctctccctctcccattga
ttttatattcatacaagtgatgaaaggcacctaacttaaattgactttgt
atatggaaaaagtttatttttgtgtggtgtggagaaactcctgtgtttta
ggctgaaccacggccgtctctattcatcagagcatctataactcagagga
ctcggattcatcacgttctgccagtttattggccatggaaaagaaaagtt
tattcatcttgctggattaggtgatctctaaggtcctttccatctccaag
attctattattttttttctctcccaacaatagacaaagtacagaaattca
tcacctctctctggtgtaagggaaactactggaagccacaagtgtttcaa
ccctggagtttggatcttcctttgtatattgctgataaaacgcctcttat
atcgtttatcattttttgttgttcaaaagtgaaaatttatccatgccact
gggtaccattaatgcgatggttttgatggggaattatatatgaaagactt
ctttactatcttctcatgttttattcctagctgattaatgaatagccttc
gagttgtgcaagatcttatatgatattcagttaaaaaaaccaataaaatc
aaatagttgtttcgtttttggtacaccaatagtttttctctatgtctagg
ttaactcatgtcattgttttatattactatatcacgcttgtattgtgttt
cttttatgtttacaatgttgtattatacatcaatctgacttctctgtcaa
gggcaagagctactacttcactgttacactcccgagatagatattagttg
ccagatattttgtataggatggcaatttgattaagcagcttcttgatatt
taaataaatttaactactttcaataactgtttactttggtgaaattcgac
ccaaacacaaaactttattttggcaagacctatgtattctatcagcagag
aa

gaattctttgtcagcaagtttccagtctgtaggacaccaataagagcttc
catgacaggaaacacagagggatagattagtgcttgctcatggaggtggg
tgcacgtgtgggtctccgttcagtctctagaatttcctgttctcactact
agtaaatgttctgcaactttagcaggaaccaaaacaaacaaaaacaaaac
aaaccaaaacaaaacaaaacaaaacaaacaaacaaacaaacaaaaactaa
aacaaaacaaaaaaccaaaaacaaccaaacaaacacccagctgagaatgt
ccatgttctttctgttcagctcctgatttctccatgcaccccaccccttg
ttttaattcttgtcctgcctgacacacctagaatggtctgtttccctctc
tgacccacagctcatgcctgatgatattcccagaacaacacaattaactc
tgcccttcaggcccagaagcagtggctggctgctttgtggtttcttaaca
cccctgccttgttcagagcacagtcactaggtaatcaatcttggtgactt
acaattaataattgttagtgaggcattgtgtgcagccaatccatcccagt
tgttgccattgttatgctggtttttcagataaaagggatagtatttagga
ggatgcaaaaaaaaaaaaaaaaaaaaaagggacggaatgtttgcaaggga
cagagagtggattagagtcactgaagcgtgaaccctcctggaactgtgga
ggggggaggattgctcagaacttttatacttcgccaaggtgtttagaatt
cataggacagcctgtttcttctgcatcctggaaaggcataagaagaggaa
atgaatgcacgagccaactagcgtttgtctgatcacattttcgggaaagc
tccaagtgacatcaaagcacagataatgagaaacagtgagcagtgggcca
agcgttgttgcctgcagcagtgacaaaagtgcccagctcccaccactggg
ggtgggggggccatagctcctggttgcagctgcagccacagctgactgga
tgacctttgaccgagtcagcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_91849435_91850577
seq2: B6Ng01-245F18.b_47_1198 (reverse)

seq1  TTCTCTGCTGGTTTAGATCATGGCCCTTG-CAAAAT-AAGTTTTGTGTTT  48
      |||||||||| |  |   ||| |  |||| |||||| |||||||||||||
seq2  TTCTCTGCTGATAGAATACATAGGTCTTGCCAAAATAAAGTTTTGTGTTT  50

seq1  GGGGTCCGATTTCACAAATGTAAACAGTTATTTGAAAGTAGTTAAATTTA  98
       |||||  ||||||| || ||||||||||| |||||||||||||||||||
seq2  -GGGTCGAATTTCACCAAAGTAAACAGTTA-TTGAAAGTAGTTAAATTTA  98

seq1  TTTAATATTCAAG-AGCTGCTTAATCAAA-TGCCAT-CTATAC-AAATAT  144
      |||||   ||||| ||||||||||||||| |||||| |||||| ||||||
seq2  TTTAAATATCAAGAAGCTGCTTAATCAAATTGCCATCCTATACAAAATAT  148

seq1  CTGGC-ACTATATTCTATCTCGGGAGTGTAACAGTG-AGTAGTAGCTCCT  192
      ||||| ||||   ||||||||||||||||||||||| ||||||||||| |
seq2  CTGGCAACTAATATCTATCTCGGGAGTGTAACAGTGAAGTAGTAGCTCTT  198

seq1  GCCCTTGACAGAGAAGTCAGATTGATGTATAATACAACATTGT-AACATA  241
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCCTTGACAGAGAAGTCAGATTGATGTATAATACAACATTGTAAACATA  248

seq1  AAAG-AACACAATAC-AGCGTGATATAGTAATATAAAACAATGACATGAG  289
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGAAACACAATACAAGCGTGATATAGTAATATAAAACAATGACATGAG  298

seq1  TTAACCTAGACATAAGAG-AAAACTATTGGTGTACCAAAAACGAAACAAC  338
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TTAACCTAGACAT-AGAGAAAAACTATTGGTGTACCAAAAACGAAACAAC  347

seq1  TATTTGATTTTATTGGTTTTTTTAACTGAATATCATATAAGATCTTGCAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTTATTGGTTTTTTTAACTGAATATCATATAAGATCTTGCAC  397

seq1  AACTCGAAGGCTATTCATTAATCAGCTAGGAATAAAACATGAGAAGATAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAAGGCTATTCATTAATCAGCTAGGAATAAAACATGAGAAGATAG  447

seq1  TAAAGAAGTCTTTCATATATAATTCCCCATCAAAACCATCGCATTAATGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGTCTTTCATATATAATTCCCCATCAAAACCATCGCATTAATGG  497

seq1  TACCCAGTGGCATGGATAAATTTTCACTTTTGAACAACAAAAAATGATAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTGGCATGGATAAATTTTCACTTTTGAACAACAAAAAATGATAA  547

seq1  ACGATATAAGAGGCGTTTTATCAGCAATATACAAAGGAAGATCCAAACTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATAAGAGGCGTTTTATCAGCAATATACAAAGGAAGATCCAAACTC  597

seq1  CAGGGTTGAAACACTTGTGGCTTCCAGTAGTTTCCCTTACACCAGAGAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGAAACACTTGTGGCTTCCAGTAGTTTCCCTTACACCAGAGAGA  647

seq1  GGTGATGAATTTCTGTACTTTGTCTATTGTTGGGAGAGAAAAAAAATAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAATTTCTGTACTTTGTCTATTGTTGGGAGAGAAAAAAAATAAT  697

seq1  AGAATCTTGGAGATGGAAAGGACCTTAGAGATCACCTAATCCAGCAAGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTGGAGATGGAAAGGACCTTAGAGATCACCTAATCCAGCAAGAT  747

seq1  GAATAAACTTTTCTTTTCCATGGCCAATAAACTGGCAGAACGTGATGAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACTTTTCTTTTCCATGGCCAATAAACTGGCAGAACGTGATGAAT  797

seq1  CCGAGTCCTCTGAGTTATAGATGCTCTGATGAATAGAGACGGCCGTGGTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCCTCTGAGTTATAGATGCTCTGATGAATAGAGACGGCCGTGGTT  847

seq1  CAGCCTAAAACACAGGAGTTTCTCCACACCACACAAAAATAAACTTTTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAAAACACAGGAGTTTCTCCACACCACACAAAAATAAACTTTTTC  897

seq1  CATATACAAAGTCAATTTAAGTTAGGTGCCTTTCATCACTTGTATGAATA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAAAGTCAATTTAAGTTAGGTGCCTTTCATCACTTGTATGAATA  947

seq1  TAAAATCAATGGGAGAGGGAGAGAAAAATATACACCTTGAGAGGAAAATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAATGGGAGAGGGAGAGAAAAATATACACCTTGAGAGGAAAATG  997

seq1  GATGAGCATTTAGTCGGTTTCCCTGTGGGGCTGTAACAGGTATTGAATGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCATTTAGTCGGTTTCCCTGTGGGGCTGTAACAGGTATTGAATGT  1047

seq1  TGCAATTTCCTTCTTACTCTGTTTTTTAAAAGAAATTATTCTCCAAGATG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTCCTTCTTACTCTGTTTTTTAAAAGAAATTATTCTCCAAGATG  1097

seq1  ACTGTGACATATTTTCAAGAAGCAGCGATGAAATGCATTTAAGAAACAAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACATATTTTCAAGAAGCAGCGATGAAATGCATTTAAGAAACAAG  1147

seq1  AATTC  1143
      |||||
seq2  AATTC  1152


seq1: chr10_91709171_91710237
seq2: B6Ng01-245F18.g_68_1142

seq1  GAATTCTTTGTCAGCAAGTTTCCAGTCTGTAGGACACCAATAAGAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCAGCAAGTTTCCAGTCTGTAGGACACCAATAAGAGCTTC  50

seq1  CATGACAGGAAACACAGAGGGATAGATTAGTGCTTGCTCATGGAGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGGAAACACAGAGGGATAGATTAGTGCTTGCTCATGGAGGTGGG  100

seq1  TGCACGTGTGGGTCTCCGTTCAGTCTCTAGAATTTCCTGTTCTCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGTGGGTCTCCGTTCAGTCTCTAGAATTTCCTGTTCTCACTACT  150

seq1  AGTAAATGTTCTGCAACTTTAGCAGGAACCAAAACAAACAAAAACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGTTCTGCAACTTTAGCAGGAACCAAAACAAACAAAAACAAAAC  200

seq1  AAACCAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAAAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAAAACTAA  250

seq1  AACAAAACAAAAAACCAAAAACAACCAAACAAACACCCAGCTGAGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAACCAAAAACAACCAAACAAACACCCAGCTGAGAATGT  300

seq1  CCATGTTCTTTCTGTTCAGCTCCTGATTTCTCCATGCACCCCACCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTTTCTGTTCAGCTCCTGATTTCTCCATGCACCCCACCCCTTG  350

seq1  TTTTAATTCTTGTCCTGCCTGACACACCTAGAATGGTCTGTTTCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCTTGTCCTGCCTGACACACCTAGAATGGTCTGTTTCCCTCTC  400

seq1  TGACCCACAGCTCATGCCTGATGATATTCCCAGAACAACACAATTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACAGCTCATGCCTGATGATATTCCCAGAACAACACAATTAACTC  450

seq1  TGCCCTTCAGGCCCAGAAGCAGTGGCTGGCTGCTTTGTGGTTTCTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCAGGCCCAGAAGCAGTGGCTGGCTGCTTTGTGGTTTCTTAACA  500

seq1  CCCCTGCCTTGTTCAGAGCACAGTCACTAGGTAATCAATCTTGGTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTTGTTCAGAGCACAGTCACTAGGTAATCAATCTTGGTGACTT  550

seq1  ACAATTAATAATTGTTAGTGAGGCATTGTGTGCAGCCAATCCATCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAATAATTGTTAGTGAGGCATTGTGTGCAGCCAATCCATCCCAGT  600

seq1  TGTTGCCATTGTTATGCTGGTTTTTCAGATAAAAGGGATAGTATTTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATTGTTATGCTGGTTTTTCAGATAAAAGGGATAGTATTTAGGA  650

seq1  GGATGCAAAAAAAAAAAAAAAAAAAAAAGGGACGGAATGTTTGCAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAAAAAAAAAAAAAAAAAAAAAAGGGACGGAATGTTTGCAAGGGA  700

seq1  CAGAGAGTGGATTAGAGTCACTGAAGCGTGAACCCTCCTGGAACTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTGGATTAGAGTCACTGAAGCGTGAACCCTCCTGGAACTGTGGA  750

seq1  GGGGGGAGGATTGCTCAGAACTTTTATACTTCGCCAAGGTGTTTAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGATTGCTCAGAACTTTTATACTTCGCCAAGGTGTTTAGAATT  800

seq1  CATAGGACAGCCTGTTTCTTCTGCATCCTGGAAAGGCATAAGAAGAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACAGCCTGTTTCTTCTGCATCCTGGAAAGGCATAAGAAGAGGAA  850

seq1  ATGAATGCACGAGCCAACTAGCGTTTGTCTGATCACATTTTCGGGAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCACGAGCCAACTAGCGTTTGTCTGATCACATTTTCGGGAAAGC  900

seq1  TCCAAGTGACATCAAAGCACAGATAATGAG-AACAGTGAGCAGTGGGCCA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCAAGTGACATCAAAGCACAGATAATGAGAAACAGTGAGCAGTGGGCCA  950

seq1  AGCGT--GTGCCTGCAGCAGTGACAAAAGTGCCCAGCTCC--ACACTGGG  995
      |||||   ||||||||||||||||||||||||||||||||   |||||||
seq2  AGCGTTGTTGCCTGCAGCAGTGACAAAAGTGCCCAGCTCCCACCACTGGG  1000

seq1  GGT-GGGGGGCCATAGCTCCTGG-TGCAGCTGCAGCCACAGCTGGCTGGA  1043
      ||| ||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GGTGGGGGGGCCATAGCTCCTGGTTGCAGCTGCAGCCACAGCTGACTGGA  1050

seq1  TGACC-TTGGCCGAGTCAGCCTCTC  1067
      ||||| ||| |||||||||||||||
seq2  TGACCTTTGACCGAGTCAGCCTCTC  1075


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