BAC Information

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BAC

Clone NameB6Ng01-245H04
Chromosome10 (Build37)
Map Location 73,940,620 - 74,090,665
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245H04.bB6Ng01-245H04.g
ACCGA054329GA054330
length2581,144
definitionB6Ng01-245H04.b B6Ng01-245H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,940,620 - 73,940,877)(74,089,548 - 74,090,665)
sequence
atttttaaaaccctggctttgtcatttgtaaaatatgaatacttatgcta
actcctagacttattttagatatgaatatgagaataagtgtaccatacat
agtctgatatttagttaaatttcagattgtttgctaaagctgatgtcagc
attgttaatggaaagagaggcccactggtcaggcaaactttatatgcccc
agtacaggggaacgccagggccaaaaaatgggaatgggtgagtaggggag
tggggggg
gaattctatatgtaaatggaatgctgtgctttaactacaacttacgtagg
atatatatacatacatatatgtatatatacatatacacactgtatgttat
agattacataatttgtataacactaaaagagcacccatataattttacag
cttcttatatactaatataaatgctgaatacactattcatgcatctgtct
aaactcttttttccaatagaagtaatttccatgatttttgagatgtgctc
tactcccatgagtaaatcctagaaacataacacctacatgtttttagtca
ctaacaaccaagtttcctgagattagctcacttccaaatttcttaccatg
ccctaatgtagttgcccttaaagttttataataaacacaaatttaataaa
atcagactatgtgggttttatcttttgacagaaacagctgtgaagtctca
gaaatacattaacaagctctgtcaaaaatgtacggtttaaaattgcttag
aaatttcacagtgtagagatgttgaccacagctgcctctgagcagtagag
tgagcagactgttcgaagcacgctgtatcacttagtagtgcatattttat
tctttccttcatataatattctataataatatgttaacatctgattttaa
accacagaatttgattttgattgataaattggaggtttttttttaaaatc
tcaaatcaagaattacagtcttaccattcagatgtattacaatctcctac
ttgactgcttttttgaaaatctataattttgttcagaaaattgtccaaat
atcattaagattgggagattaaatataatatttgaagctgcgtctaacat
ggatatgggtttatatatatattttttttctgtaacttttccttttgtct
tgatttgtttcctttttctttttcactacagtttctcaacttgagttctc
agctattttagactttaataataagatgatgggctgttaatgggctgaca
gctggtattatctgttctggagcttggaaactagcttttggctccaaaaa
tcactggcacccacaacaggtttatccttccttcattactcacattggcg
cctctcttcccagttctttcaatagagagaatgtgtgcttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73940620_73940877
seq2: B6Ng01-245H04.b_51_308

seq1  ATTTTTAAAACCCTGGCTTTGTCATTTGTAAAATATGAATACTTATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAACCCTGGCTTTGTCATTTGTAAAATATGAATACTTATGCTA  50

seq1  ACTCCTAGACTTATTTTAGATATGAATATGAGAATAAGTGTACCATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGACTTATTTTAGATATGAATATGAGAATAAGTGTACCATACAT  100

seq1  AGTCTGATATTTAGTTAAATTTCAGATTGTTTGCTAAAGCTGATGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATATTTAGTTAAATTTCAGATTGTTTGCTAAAGCTGATGTCAGC  150

seq1  ATTGTTAATGGAAAGAGAGGCCCACTGGTCAGGCAAACTTTATATGCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAATGGAAAGAGAGGCCCACTGGTCAGGCAAACTTTATATGCCCC  200

seq1  AGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGAGTAGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGAGTAGGGGAG  250

seq1  TGGGGGGG  258
      ||||||||
seq2  TGGGGGGG  258

seq1: chr10_74089548_74090665
seq2: B6Ng01-245H04.g_70_1213 (reverse)

seq1  CAGG-AGCACA-----TCTCTAT--GAAGAACTGGG-AGAGA-GCG-CAA  39
      |||| ||||||     |||||||   |||||||||| ||||| ||| |||
seq2  CAGGAAGCACACATTCTCTCTATTGAAAGAACTGGGAAGAGAGGCGCCAA  50

seq1  TGTGAGTAATG-AGGGAGGATAA--CTG-TGTGGGTG-CAGTGGATTTTG  84
      ||||||||||| ||| |||||||  ||| |||||||| |||| |||||| 
seq2  TGTGAGTAATGAAGGAAGGATAAACCTGTTGTGGGTGCCAGT-GATTTTT  99

seq1  GGAGC--AAAGCTAG-TTCCAAGCT-CAG-ACAGAT-ATA-CAGCTGTCA  127
      |||||  |||||||| ||||||||| ||| |||||| ||| |||||||||
seq2  GGAGCCAAAAGCTAGTTTCCAAGCTCCAGAACAGATAATACCAGCTGTCA  149

seq1  GCCCATT-ACAGCCCATCATCTTATTATT-AAGTCTAAAATAGCTGAGAA  175
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCCATTAACAGCCCATCATCTTATTATTAAAGTCTAAAATAGCTGAGAA  199

seq1  CTCAAGTTGAGAAACTGTAGTGAAAAAGAAAAAGGAAACAAATCAAGACA  225
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTGAGAAACTGTAGTGAAAAAGAAAAAGGAAACAAATCAAGACA  249

seq1  AAAGGAAAAGTTACAG-AAAAAAATATATATATAAA-CCATATCCATGTT  273
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AAAGGAAAAGTTACAGAAAAAAAATATATATATAAACCCATATCCATGTT  299

seq1  AGACGCAGCTTCAAATATTATATTTAATCTCCCAATCTTAATGATATTTG  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAGCTTCAAATATTATATTTAATCTCCCAATCTTAATGATATTTG  349

seq1  GACAATTTTCTGAACAAAATTATAGATTTTCAAAAAAGCAGTCAAGTAGG  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTTCTGAACAAAATTATAGATTTTCAAAAAAGCAGTCAAGTAGG  399

seq1  AGATTGTAATACATCTGAATGGTAAGACTGTAATTCTTGATTTGAGATTT  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAATACATCTGAATGGTAAGACTGTAATTCTTGATTTGAGATTT  449

seq1  TAAAAAAAAACCTCCAATTTATCAATCAAAATCAAATTCTGTGGTTTAAA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAACCTCCAATTTATCAATCAAAATCAAATTCTGTGGTTTAAA  499

seq1  ATCAGATGTTAACATATTATTATAGAATATTATATGAAGGAAAGAATAAA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGTTAACATATTATTATAGAATATTATATGAAGGAAAGAATAAA  549

seq1  ATATGCACTACTAAGTGATACAGCGTGCTTCGAACAGTCTGCTCACTCTA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACTACTAAGTGATACAGCGTGCTTCGAACAGTCTGCTCACTCTA  599

seq1  CTGCTCAGAGGCAGCTGTGGTCAACATCTCTACACTGTGAAATTTCTAAG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGAGGCAGCTGTGGTCAACATCTCTACACTGTGAAATTTCTAAG  649

seq1  CAATTTTAAACCGTACATTTTTGACAGAGCTTGTTAATGTATTTCTGAGA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAAACCGTACATTTTTGACAGAGCTTGTTAATGTATTTCTGAGA  699

seq1  CTTCACAGCTGTTTCTGTCAAAAGATAAAACCCACATAGTCTGATTTTAT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCTGTTTCTGTCAAAAGATAAAACCCACATAGTCTGATTTTAT  749

seq1  TAAATTTGTGTTTATTATAAAACTTTAAGGGCAACTACATTAGGGCATGG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTGTTTATTATAAAACTTTAAGGGCAACTACATTAGGGCATGG  799

seq1  TAAGAAATTTGGAAGTGAGCTAATCTCAGGAAACTTGGTTGTTAGTGACT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTTGGAAGTGAGCTAATCTCAGGAAACTTGGTTGTTAGTGACT  849

seq1  AAAAACATGTAGGTGTTATGTTTCTAGGATTTACTCATGGGAGTAGAGCA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGTAGGTGTTATGTTTCTAGGATTTACTCATGGGAGTAGAGCA  899

seq1  CATCTCAAAAATCATGGAAATTACTTCTATTGGAAAAAAGAGTTTAGACA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAAAATCATGGAAATTACTTCTATTGGAAAAAAGAGTTTAGACA  949

seq1  GATGCATGAATAGTGTATTCAGCATTTATATTAGTATATAAGAAGCTGTA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGAATAGTGTATTCAGCATTTATATTAGTATATAAGAAGCTGTA  999

seq1  AAATTATATGGGTGCTCTTTTAGTGTTATACAAATTATGTAATCTATAAC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATGGGTGCTCTTTTAGTGTTATACAAATTATGTAATCTATAAC  1049

seq1  ATACAGTGTGTATATGTATATATACATATATGTATGTATATATATCCTAC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGTGTATATGTATATATACATATATGTATGTATATATATCCTAC  1099

seq1  GTAAGTTGTAGTTAAAGCACAGCATTCCATTTACATATAGAATTC  1118
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGTAGTTAAAGCACAGCATTCCATTTACATATAGAATTC  1144