BAC Information

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BAC

Clone NameB6Ng01-245M18
Chromosome10 (Build37)
Map Location 109,019,582 - 109,020,476
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M18.bB6Ng01-245M18.g
ACCGA054588GA054589
length1,1681,211
definitionB6Ng01-245M18.b B6Ng01-245M18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcagagtggaaggaaatctttggcagctatacatcttacatct
aatacagaattaatatctagactacatttaaaaccaaaaaatatacacaa
acaaacaaccaattttaaaaataggctatacatcttaacagactgttctc
agaagaaagtctaaaagtgattaaggaatatctcagatagtgttcaacat
ccttagccattaggaaaatgcaaatcaaaacagctttgagatttcatctt
atctgagtctgaatgcctaagatcaagaaaagaactgacaacaaatattg
gtggattgcaaaccagtgaagccactttggaaattatatcaaaaaatcta
aaatccaatctatcttatgacccagttatatcacagattagcacatgccc
aaaggactccctggacatcatattccacacatacaaacagcctaaacatt
attcaactcatgaatggataaataaaaatgggatatatatatatatatat
atatatatatatatatatatatatacaatgtaatcctactcagctgtaag
aaaatgaaatcctgaaaattgcaggcaattagatggaactacaacttact
atatgctgagtgagttaacatacactcagaaagacaaatactaccatttt
tttttcgattttgtggttcttaacactgattatatagacatgagcatata
ttagagagtaaccatagaatccagagaaatgcaaaggaatggggtcaaag
agaagctctagaagggggaattgctgtcatataggtgcttggaatcaaac
ctaaatccacaagaagataagttaatgtggctaattgctaatctatttct
ctatatccaaaaaactccatctgtggaacatttagtttcgatttgtttat
ttttactttgtttttgaaacgggatctctttctgtagcatttgttggcct
tagaactcacttcccagtagaccagaatagcctccccactgacagagacc
cgccttgcttcttgccctctagattaccttgtaaagtacctttttatcca
cgttggcattaatttgtcaaccttggagcttatttgctaacatatcagcc
tccatccgtttccaagtttcttttctgacttcttgcttgcccgattcaag
cccagcttggtttctgga
gaattcagaagaggttgggagttttagccagcagtgagtctgtgggtaag
ttacccctctggctaagcttatctaagtgcacgagtggacttcctcacgg
cgccaatggtcagcctaggcttagaagggttccaaaagaaggggtgtgtg
ggaacggcaaaaacaaatgactcaaagtcaagtcatgagtctaagctggc
agcctatgctctcttctggagatggctttccagcttgcgttctctctgtt
ctgcattcttaccctctgatctgcttactctagagatctctggacagctc
tttctctttgttctccttaagaccgttctccaagcagttctctcttgcta
ttctaaaacattctctgggtggcacatctcctgcagatcgttagcccagt
ctttaattttccagatcaatccaatcatttacttcaggtttcttcttgat
tatcctaaaaatcagcctccagggattcccagcccttttatgcttaaaga
gacaacaagcacacattttgttttaacattgcaaaagaaatcggagttct
aaagtcccagcatttaccatttttgctgagacagagtcatacctttgcct
cccagactcatgctgtctctgattatcatcgagtcttaaatgttaatggg
aaatacatctgcacaatggagtactactcagctattaaaaagaatgaatt
tatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtg
aggtaacacattcacaaaggaactcacacaatatgtactcactgataagt
ggatattagccccaaacctaggatacccaagatataagatacaatttgct
aaacacatgaaactcaaaaagaatgaagactgaagtgtggacactatgcc
cctccttagaattgggaacaaaacacccatggaaaggagttacaaagaca
aagttggagctgagatgaaagatggccatgtagagactgccatattccag
gatccacccccataatcagcatccaaacacctggcaccattgcatatact
agccagatttttatccaaacgacccagatgtagctggtctcttgtgagac
tatgccaggccctagccaaacaccagaagtggaatgcctcacagttccgc
ctaatggatggaatcaccatggcctctctcaaatgggagaggaagcctct
tgaagaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109019582_109020476
seq2: B6Ng01-245M18.b_293_1213

seq1  CTTATCTGAGTCTGAATGCCTAAGATCAAGAAAAGAACTGACAACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGAGTCTGAATGCCTAAGATCAAGAAAAGAACTGACAACAAATA  50

seq1  TTGGTGGATTGCAAACCAGTGAAGCCACTTTGGAAATTATATCAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGATTGCAAACCAGTGAAGCCACTTTGGAAATTATATCAAAAAAT  100

seq1  CTAAAATCCAATCTATCTTATGACCCAGTTATATCACAGATTAGCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCCAATCTATCTTATGACCCAGTTATATCACAGATTAGCACATG  150

seq1  CCCAAAGGACTCCCTGGACATCATATTCCACACATACAAACAGCCTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGACTCCCTGGACATCATATTCCACACATACAAACAGCCTAAAC  200

seq1  ATTATTCAACTCATGAATGGATAAATAAAAATGGGATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAACTCATGAATGGATAAATAAAAATGGGATATATATATATATA  250

seq1  TATATATATATATATATATATATATATACAATGTAATCCTACTCAGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATACAATGTAATCCTACTCAGCTGT  300

seq1  AAGAAAATGAAATCCTGAAAATTGCAGGCAATTAGATGGAACTACAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGAAATCCTGAAAATTGCAGGCAATTAGATGGAACTACAACTT  350

seq1  ACTATATGCTGAGTGAGTTAACATACACTCAGAAAGACAAATACTACCA-  399
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTATATGCTGAGTGAGTTAACATACACTCAGAAAGACAAATACTACCAT  400

seq1  TTTTTTTTCGATTTTGTGGTTCTTAACACTGATTATATAGACATGAGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCGATTTTGTGGTTCTTAACACTGATTATATAGACATGAGCAT  450

seq1  ATATTAGAGAGTAACCATAGAATCCAGAGAAATGCAAAGGAATGGGGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGAGTAACCATAGAATCCAGAGAAATGCAAAGGAATGGGGTCA  500

seq1  AAGAGAAGCTCTAGAAGGGGGAATTGCTGTCATATAGGTGCTTGGAATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCTCTAGAAGGGGGAATTGCTGTCATATAGGTGCTTGGAATCA  550

seq1  AACCTAAATCCACAAGAAGATAAGTTAATGTGGCTAATTGCTAATCTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAATCCACAAGAAGATAAGTTAATGTGGCTAATTGCTAATCTATT  600

seq1  TCTCTATATCCAAAAAACTCCATCTGTGGAACATTTAGTTTCGATTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATCCAAAAAACTCCATCTGTGGAACATTTAGTTTCGATTTGTT  650

seq1  TA-TTTTACTTTGTTTTTGAAACGGGATCTCTTTCTGTAGCATTTGTTGG  698
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTTTGTTTTTGAAACGGGATCTCTTTCTGTAGCATTTGTTGG  700

seq1  -CTTAGAACTCACTTCCCAGTAGACCAGAATAGCCT-CCCACTGACAGAG  746
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTAGAACTCACTTCCCAGTAGACCAGAATAGCCTCCCCACTGACAGAG  750

seq1  ACCCGCC-TGCTTCT--GCCTCTAGATTACCTGTAAAAGTAAC-TTTTAT  792
      ||||||| |||||||   ||||||||||||||   |||||| | ||||||
seq2  ACCCGCCTTGCTTCTTGCCCTCTAGATTACCTTGTAAAGTACCTTTTTAT  800

seq1  CCACG-TGGCAT--AATTGTCAA-CTTGGAGGCTTA-TTGCT---ACATC  834
      ||||| ||||||  | ||||||| |||||| ||||| |||||   | |||
seq2  CCACGTTGGCATTAATTTGTCAACCTTGGA-GCTTATTTGCTAACATATC  849

seq1  AGC--TCAT-CGTTTCC-AGTT--CTTTCTGAACTCTGGC-TGGCCGATT  877
      |||   ||| ||||||| ||||   |||||||  ||| || || ||||||
seq2  AGCCTCCATCCGTTTCCAAGTTTCTTTTCTGACTTCTTGCTTGCCCGATT  899

seq1  CAA-CCCAGCT---GTTCTGGA  895
      ||| |||||||    |||||||
seq2  CAAGCCCAGCTTGGTTTCTGGA  921