BAC Information

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BAC

Clone NameB6Ng01-246F14
Chromosome10 (Build37)
Map Location 34,590,515 - 34,791,283
singlet/doubletdoublet
Overlap geneLOC667824
Upstream geneSult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246F14.bB6Ng01-246F14.g
ACCGA054985GA054986
length9061,197
definitionB6Ng01-246F14.b B6Ng01-246F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,790,378 - 34,791,283)(34,590,515 - 34,591,674)
sequence
gaattcattgcctcaggtgtatttgttcatgttctctgaaatgaacactc
catttttacacaggaagaaagtatattattttatttaaccagattatggc
tagaggaagttcagagtatctttcagttcttaaaactggccattgtggct
aacaagaacattctcatacatggctcaatgtccacatatccacctgtatt
cttaatgaatgccatcaaatattttctaaagttcttcaaaggtgctgttc
accatttaaatcaatagatgcctgcttttgtctgagaaaacacatattat
tgatgataatgctattggagaccagaaatagccattaagaaagcattact
ttgctgatgcttgaagaaaccttgaaggttttaataaaagagatatattc
cctcaatctgagagatagccctagggacaaaacttgttgaacagagttta
gctgttttaacatggttttaaatcctgagtaactgagagctttatcagta
tccttggttcttgtattttccgaagaaagaattcaactgggggactcaga
ttgcttgagtagatgttcatttagaaaagcaaaggatagtggtcctgaga
ttgatactgaagcaggctagtgcaagcaaagagtagcaacccaattggtg
ctgcattgtagaatttaagaaatgtttagatttataaggaggatagcaca
tacatgagagtcacatggcccctttttcttccaaattagagtgttccaga
tcacctttgggtgtgttctcccatgtcttttgaaaatgctccctcagtct
cacttaggaaggagaaagaagcaatcacaggagaggggaggaagagaggc
agctgggagggaaaggggacaggaaggggaagatgggaacatgatcaggt
aatggg
gaattcttggaatgttagaaaggaaggaatgaggtgtgaaaagatgtaaa
tgtgacccatgtaactccagaggaacaattctctgcagtcagggttagaa
aattcattcctctgtcctttgatttattcattacaaaactaatgtgttgg
gaatgacaccgaagaccctatttttaatttacaaatactatgtttaatgg
gttgagatttattgataagccagattagttattttcttgaaataataaat
gaatgacccatgccctgggatattctgggacagcttgcaagcatgtatgc
ctagttttgtatagaaagagattatcctcatcatctctttgaagtaattt
gtgacaccagaatgccaggaatgaggacatcatccagaactgagggtttt
tcccacatttagacaagtttaatcgcaaaccaggctaaattagtcacaga
ggaaactttatatgccccagtacaggggaatgccaggaccaagaagcagg
agttggtgagtaggggagcagggcggagggagggtataggaaactttcgg
gatagcatttgaaatgtatataaagaaaatatctaataaaaaaataaatt
aaaaaagaagacaatagaaaaaaaaagaaagaaaagaaaacttaaatcta
aaggaatagcaaacatgcccaatgactctacctgagaaactaaggaagaa
cttcctgatgccctcctttaatatgaaaatgcctgtcatattccctctcc
caactatcaaatgaaaggcagatagatacacactttctaaagttatgtct
gtaataacacatatttcatatgaaccatgtgttgtttatacagagaacat
ttgcctatataagtatagaactatttgtgttttattagaaaatcctgtta
caaatgactagaccaagaaactaaggctgaggaagaaacttttttaattc
aaggatgcagatgggggcattagtctatggaaatctagcccctctaaatg
ggcggtttacttgcagggtaatttacttatgagttaggaaaaatgcagcc
ttttatgttgatacttaagagcaagattagcttgccctaacattggggta
ttccttggcgaatccttattttttcatactaaaaatggtttattttcaga
gccagggttggaagttactgggtcctttaatgctgttgatagactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34790378_34791283
seq2: B6Ng01-246F14.b_48_953 (reverse)

seq1  CCCAATACCTGATCATGTTCCCATCTTCCCCTTCCTGTCCCCTTTCCCTC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACCTGATCATGTTCCCATCTTCCCCTTCCTGTCCCCTTTCCCTC  50

seq1  CCAGCTGCCTCTCTTCCTCCCCTCTCCTGTGATTGCTTCTTTCTCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCTCTCTTCCTCCCCTCTCCTGTGATTGCTTCTTTCTCCTTCC  100

seq1  TAAGTGGGACTGAGGGAGCATTTTCAAAAGACATGGGAGAACACACCCAA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGACTGAGGGAGCATTTTCAAAAGACATGGGAGAACACACCCAA  150

seq1  AGGTGATCTGGAACACTCTAATTTGGAAGAAAAAGGGGCCATGTGACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATCTGGAACACTCTAATTTGGAAGAAAAAGGGGCCATGTGACTCT  200

seq1  CATGTATGTGCTATCCTCCTTATAAATCTAAACATTTCTTAAATTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGCTATCCTCCTTATAAATCTAAACATTTCTTAAATTCTACA  250

seq1  ATGCAGCACCAATTGGGTTGCTACTCTTTGCTTGCACTAGCCTGCTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCACCAATTGGGTTGCTACTCTTTGCTTGCACTAGCCTGCTTCAG  300

seq1  TATCAATCTCAGGACCACTATCCTTTGCTTTTCTAAATGAACATCTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATCTCAGGACCACTATCCTTTGCTTTTCTAAATGAACATCTACTC  350

seq1  AAGCAATCTGAGTCCCCCAGTTGAATTCTTTCTTCGGAAAATACAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTGAGTCCCCCAGTTGAATTCTTTCTTCGGAAAATACAAGAAC  400

seq1  CAAGGATACTGATAAAGCTCTCAGTTACTCAGGATTTAAAACCATGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATACTGATAAAGCTCTCAGTTACTCAGGATTTAAAACCATGTTAA  450

seq1  AACAGCTAAACTCTGTTCAACAAGTTTTGTCCCTAGGGCTATCTCTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTAAACTCTGTTCAACAAGTTTTGTCCCTAGGGCTATCTCTCAGA  500

seq1  TTGAGGGAATATATCTCTTTTATTAAAACCTTCAAGGTTTCTTCAAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAATATATCTCTTTTATTAAAACCTTCAAGGTTTCTTCAAGCAT  550

seq1  CAGCAAAGTAATGCTTTCTTAATGGCTATTTCTGGTCTCCAATAGCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTAATGCTTTCTTAATGGCTATTTCTGGTCTCCAATAGCATTA  600

seq1  TCATCAATAATATGTGTTTTCTCAGACAAAAGCAGGCATCTATTGATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATAATATGTGTTTTCTCAGACAAAAGCAGGCATCTATTGATTTA  650

seq1  AATGGTGAACAGCACCTTTGAAGAACTTTAGAAAATATTTGATGGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAACAGCACCTTTGAAGAACTTTAGAAAATATTTGATGGCATTC  700

seq1  ATTAAGAATACAGGTGGATATGTGGACATTGAGCCATGTATGAGAATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAATACAGGTGGATATGTGGACATTGAGCCATGTATGAGAATGTT  750

seq1  CTTGTTAGCCACAATGGCCAGTTTTAAGAACTGAAAGATACTCTGAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGCCACAATGGCCAGTTTTAAGAACTGAAAGATACTCTGAACTT  800

seq1  CCTCTAGCCATAATCTGGTTAAATAAAATAATATACTTTCTTCCTGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCCATAATCTGGTTAAATAAAATAATATACTTTCTTCCTGTGTA  850

seq1  AAAATGGAGTGTTCATTTCAGAGAACATGAACAAATACACCTGAGGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGTGTTCATTTCAGAGAACATGAACAAATACACCTGAGGCAAT  900

seq1  GAATTC  906
      ||||||
seq2  GAATTC  906

seq1: chr10_34590515_34591674
seq2: B6Ng01-246F14.g_69_1265

seq1  GAATTCTTGGAATGTTAGAAAGGAAGGAATGAGGTGTGAAAAGATGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAATGTTAGAAAGGAAGGAATGAGGTGTGAAAAGATGTAAA  50

seq1  TGTGACCCATGTAACTCCAGAGGAACAATTCTCTGCAGTCAGGGTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCATGTAACTCCAGAGGAACAATTCTCTGCAGTCAGGGTTAGAA  100

seq1  AATTCATTCCTCTGTCCTTTGATTTATTCATTACAAAACTAATGTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCCTCTGTCCTTTGATTTATTCATTACAAAACTAATGTGTTGG  150

seq1  GAATGACACCGAAGACCCTATTTTTAATTTACAAATACTATGTTTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACACCGAAGACCCTATTTTTAATTTACAAATACTATGTTTAATGG  200

seq1  GTTGAGATTTATTGATAAGCCAGATTAGTTATTTTCTTGAAATAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATTTATTGATAAGCCAGATTAGTTATTTTCTTGAAATAATAAAT  250

seq1  GAATGACCCATGCCCTGGGATATTCTGGGACAGCTTGCAAGCATGTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCCATGCCCTGGGATATTCTGGGACAGCTTGCAAGCATGTATGC  300

seq1  CTAGTTTTGTATAGAAAGAGATTATCCTCATCATCTCTTTGAAGTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGTATAGAAAGAGATTATCCTCATCATCTCTTTGAAGTAATTT  350

seq1  GTGACACCAGAATGCCAGGAATGAGGACATCATCCAGAACTGAGGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCAGAATGCCAGGAATGAGGACATCATCCAGAACTGAGGGTTTT  400

seq1  TCCCACATTTAGACAAGTTTAATCGCAAACCAGGCTAAATTAGTCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTTAGACAAGTTTAATCGCAAACCAGGCTAAATTAGTCACAGA  450

seq1  GGAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGACCAAGAAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGACCAAGAAGCAGG  500

seq1  AGTTGGTGAGTAGGGGAGCAGGGCGGAGGGAGGGTATAGGAAACTTTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGAGTAGGGGAGCAGGGCGGAGGGAGGGTATAGGAAACTTTCGG  550

seq1  GATAGCATTTGAAATGTATATAAAGAAAATATCTAATAAAAAAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATTTGAAATGTATATAAAGAAAATATCTAATAAAAAAATAAATT  600

seq1  AAAAAAGAAGACAATAGAAAAAAAAAGAAAGAAAAGAAAACTTAAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGACAATAGAAAAAAAAAGAAAGAAAAGAAAACTTAAATCTA  650

seq1  AAGGAATAGCAAACATGCCCAATGACTCTACCTGAGAAACTAAGGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGCAAACATGCCCAATGACTCTACCTGAGAAACTAAGGAAGAA  700

seq1  CTTCCTGATGCCCTCCTTTAATATGAAAATGCCTGTCATATTCCCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGCCCTCCTTTAATATGAAAATGCCTGTCATATTCCCTCTCC  750

seq1  CAACTATCAAATGAAAGGCAGATAGATACACAC-TTCTAAAGTTATGTCT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAACTATCAAATGAAAGGCAGATAGATACACACTTTCTAAAGTTATGTCT  800

seq1  GTAATAACACATA-TTCATATGAACCATGTGTTGTTTATACAGAGAACA-  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  GTAATAACACATATTTCATATGAACCATGTGTTGTTTATACAGAGAACAT  850

seq1  TTGCCTATATAAGTATAGAACTA-TTGTG-TTTATTAGAAAA-CCTGTTA  894
      ||||||||||||||||||||||| ||||| |||||||||||| |||||||
seq2  TTGCCTATATAAGTATAGAACTATTTGTGTTTTATTAGAAAATCCTGTTA  900

seq1  CAAATGACTAGACAAAGAAACTAA-GCTGA-GAAGAAACTTTTT--AATC  940
      ||||||||||||| |||||||||| ||||| |||||||||||||  | ||
seq2  CAAATGACTAGACCAAGAAACTAAGGCTGAGGAAGAAACTTTTTTAATTC  950

seq1  AA-GATGCAGAT-GGGGCA-TAGTCTATGGAATTC-AG-CCCTCTAAAT-  984
      || ||||||||| |||||| |||||||||||| || || |||||||||| 
seq2  AAGGATGCAGATGGGGGCATTAGTCTATGGAAATCTAGCCCCTCTAAATG  1000

seq1  GGCGGTTTAC-TGCAAGGTTAATTACCTATGAGTTAG--AAAATGCAGCC  1031
      |||||||||| |||| ||| | |||| ||||||||||  |||||||||||
seq2  GGCGGTTTACTTGCAGGGTAATTTACTTATGAGTTAGGAAAAATGCAGCC  1050

seq1  -TTTATGTTGATAC-TAAAAGCAGAGTTAGC-TGCC--TACATT-GGGTA  1075
       ||||||||||||| ||| ||||   ||||| ||||   ||||| |||||
seq2  TTTTATGTTGATACTTAAGAGCAAGATTAGCTTGCCCTAACATTGGGGTA  1100

seq1  T--CTCTGCAGAAACTAATTTT----CACCAAAAATG--TGAATTTTAGA  1117
      |  ||  ||  |  || |||||     || |||||||  | | ||| |||
seq2  TTCCTTGGCGAATCCTTATTTTTTCATACTAAAAATGGTTTATTTTCAGA  1150

seq1  GCAA--GTTTGA--GTACTGTGTAATTTATTGCTGTTGATAGACTGG  1160
      || |  ||| ||   ||||| ||  |||| |||||||||||||||||
seq2  GCCAGGGTTGGAAGTTACTGGGTCCTTTAATGCTGTTGATAGACTGG  1197