BAC Information

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BAC

Clone NameB6Ng01-246O08
Chromosome10 (Build37)
Map Location 105,711,194 - 105,818,775
singlet/doubletdoublet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758, EG639162
Downstream genePpfia2, Olfr1556-ps1, 8430416H19Rik, Lin7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O08.bB6Ng01-246O08.g
ACCGA055383GA055384
length1,160735
definitionB6Ng01-246O08.b B6Ng01-246O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,711,194 - 105,712,312)(105,818,226 - 105,818,775)
sequence
gaattcttattaagaaggctcccagagcagatctgtttcaggccacctac
taccagctctttgacatttccgacaccatcaagaattttcttttcttttc
ttttcttttcttttcttttcttttttctctctctccccaggttctctggc
atttgccaaatctgaaacttgggagtgagagatgcaatagtaattcaatg
cagaagtcaacattatctgtattcttggggacaagtaaaattcctagacg
gtgatccaggagtatgaaaaggactttgcaaagattctgaataaatgcca
gaataaaaggagtagccacctggaaatgaaaggtgccaagagcaaaaatg
gcaagaagaaggctgtttgtttcagaaatattttgtttgtctcttattta
tgaccatttttttcctttatataaatagccctcttccttactactgacca
tctgtgtgccgtgatgccgacttctggtgacagccaactgtttcaggtgg
ttctaattgagccaaacaagtcccatttgatactcatttctaagaaactg
cattttagaatggaaagagattgaaacaatcccctgaaggcttactcaga
gtgaataagcacattgcatgaggacagaaccatagacctgtcaggaagta
gagacatttaaaaggtctcagcagcaggagggagaaagagagcgtctgct
gaggagttagttgcaaggaaggtagggataattttccattttgtttatct
ctaaaatcttaatgatttgagtatgtctgaatgtatgacttacctgtgtc
ctcatcacatgaacttggcttcctttctggaaaaaaaaaagagtttgtta
ggcagaaagttctttcagtttccttcaacagcaaagatgcaaaaccacta
gaattttgttattaggctccttttccttttgttaatgttaccaagccagg
aatgaaaaaagaggtgccaataaacttgaatgcaaaatgggctgctttat
tttataatggagtcaagtcaaaagtgttcttgcacctttgttctagcctc
ctatccatcttctaaggagtcttacttaacagaatctggaatctccgaga
ctttgtgtgccatatacagttgggccatttacattttgatagtgaattgt
ccattcggtt
gaattccgttgattcagatgaggaagctctcattgaatttgctggtttct
tttttttttttttccatttttttattaggtatttagctcatttacatttc
caatgctgtaccaaaagtcccccataaccacccacccccactcccctacc
cacccactccccctttttggccctggcgttcccctgtactggggcatata
aattttgcgtgtccaatgggcctctctttccagtgatggtcgactaggcc
atcttttgatacatatgcagctagagtcaagagctccggggtactggtta
gttcataatgttgttccacctatagggttgcagatctctttagctccttg
ggttctttctctagctcctccattgggagccctgtgatccatccattagc
tggctgtgagcatccacttctgtgtttgctaggccccggcatagtctcac
aagagatagctacatctgggtcctttcgataaaatcttgctagggtatgc
aatggtgtctttgtaacaggtttacagatcagttgccttcctaccaaaga
cccaacaaccccagcaaactctcattctgtttgatatagaagtagtagat
ttagctttcagcttcttggaattgtgtctgtctttaatttaaaggaacat
tcttgctttggtccatgggaccaaaatttctctatttctgaatcttgatg
tgaaattacccttttcttatatttaacgggaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_105711194_105712312
seq2: B6Ng01-246O08.b_51_1210

seq1  GAATTCTTATTAAGAAGGCTCCCAGAGCAGATCTGTTTCAGGCCACCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAAGAAGGCTCCCAGAGCAGATCTGTTTCAGGCCACCTAC  50

seq1  TACCAGCTCTTTGACATTTCCGACACCATCAAGAATTTTCTTTTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCTCTTTGACATTTCCGACACCATCAAGAATTTTCTTTTCTTTTC  100

seq1  TTTTCTTTTCTTTTCTTTTCTTTTTTCTCTCTCTCCCCAGGTTCTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTTTCTCTCTCTCCCCAGGTTCTCTGGC  150

seq1  ATTTGCCAAATCTGAAACTTGGGAGTGAGAGATGCAATAGTAATTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAAATCTGAAACTTGGGAGTGAGAGATGCAATAGTAATTCAATG  200

seq1  CAGAAGTCAACATTATCTGTATTCTTGGGGACAAGTAAAATTCCTAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCAACATTATCTGTATTCTTGGGGACAAGTAAAATTCCTAGACG  250

seq1  GTGATCCAGGAGTATGAAAAGGACTTTGCAAAGATTCTGAATAAATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCAGGAGTATGAAAAGGACTTTGCAAAGATTCTGAATAAATGCCA  300

seq1  GAATAAAAGGAGTAGCCACCTGGAAATGAAAGGTGCCAAGAGCAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGGAGTAGCCACCTGGAAATGAAAGGTGCCAAGAGCAAAAATG  350

seq1  GCAAGAAGAAGGCTGTTTGTTTCAGAAATATTTTGTTTGTCTCTTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAAGGCTGTTTGTTTCAGAAATATTTTGTTTGTCTCTTATTTA  400

seq1  TGACCATTTTTTTCCTTTATATAAATAGCCCTCTTCCTTACTACTGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTTTTTTCCTTTATATAAATAGCCCTCTTCCTTACTACTGACCA  450

seq1  TCTGTGTGCCGTGATGCCGACTTCTGGTGACAGCCAACTGTTTCAGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCCGTGATGCCGACTTCTGGTGACAGCCAACTGTTTCAGGTGG  500

seq1  TTCTAATTGAGCCAAACAAGTCCCATTTGATACTCATTTCTAAGAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTGAGCCAAACAAGTCCCATTTGATACTCATTTCTAAGAAACTG  550

seq1  CATTTTAGAATGGAAAGAGATTGAAACAATCCCCTGAAGGCTTACTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGAATGGAAAGAGATTGAAACAATCCCCTGAAGGCTTACTCAGA  600

seq1  GTGAATAAGCACATTGCATGAGGACAGAACCATAGACCTGTCAGGAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAGCACATTGCATGAGGACAGAACCATAGACCTGTCAGGAAGTA  650

seq1  GAGACATTTAAAAGGTCTCAGCAGCAGGAGGGAGAAAGAGAGCGTCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTTAAAAGGTCTCAGCAGCAGGAGGGAGAAAGAGAGCGTCTGCT  700

seq1  GAGGAGTTAGTTGCAAGGAAGGTAGGGATAATTTTCCATTTTGTTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTAGTTGCAAGGAAGGTAGGGATAATTTTCCATTTTGTTTATCT  750

seq1  CTAAAATCTTAATGATTTGAGTATGTCTGAATGTATGACTTACCTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCTTAATGATTTGAGTATGTCTGAATGTATGACTTACCTGTGTC  800

seq1  CTCATCACATGAACTT-GCTTCC-TTCTGG-AAAAAAAAAGAGTTTGTTA  847
      |||||||||||||||| |||||| |||||| |||||||||||||||||||
seq2  CTCATCACATGAACTTGGCTTCCTTTCTGGAAAAAAAAAAGAGTTTGTTA  850

seq1  GGCAGAAAGTTC-TTCAGTT--CCTCAACAGCAAAGATGCAAAA-CACTA  893
      |||||||||||| |||||||  | |||||||||||||||||||| |||||
seq2  GGCAGAAAGTTCTTTCAGTTTCCTTCAACAGCAAAGATGCAAAACCACTA  900

seq1  GAATTT--GTATTA-GCTCCTTTTCCTTT--GTAATG-TACCAAG-CAGG  936
      ||||||   ||||| ||||||||||||||   ||||| ||||||| ||||
seq2  GAATTTTGTTATTAGGCTCCTTTTCCTTTTGTTAATGTTACCAAGCCAGG  950

seq1  -ATG-AAAAAGAGGTGCCAATAAACTTG-ATGCAAAAT-GGCTGC-TTAT  981
       ||| ||||||||||||||||||||||| ||||||||| |||||| ||||
seq2  AATGAAAAAAGAGGTGCCAATAAACTTGAATGCAAAATGGGCTGCTTTAT  1000

seq1  TTTATAATGGAGTC-AGTCAAAAGTGTTC-TGCAC--TTG-TCTAGCCTC  1026
      |||||||||||||| |||||||||||||| |||||  ||| |||||||||
seq2  TTTATAATGGAGTCAAGTCAAAAGTGTTCTTGCACCTTTGTTCTAGCCTC  1050

seq1  CTATCCATCTTCT-AGGAGTC-TACCTAACAG-ATCT-GAAT---CCAGA  1069
      ||||||||||||| ||||||| ||| |||||| |||| ||||   | |||
seq2  CTATCCATCTTCTAAGGAGTCTTACTTAACAGAATCTGGAATCTCCGAGA  1100

seq1  CTTTGTG-GC---ATACAGTTTGG-CATT----ATTTGATAGTG-ATTGT  1109
      ||||||| ||   |||||||| || ||||     |||||||||| |||||
seq2  CTTTGTGTGCCATATACAGTTGGGCCATTTACATTTTGATAGTGAATTGT  1150

seq1  CCATTTGGTT  1119
      ||||| ||||
seq2  CCATTCGGTT  1160

seq1: chr10_105818226_105818775
seq2: B6Ng01-246O08.g_67_616 (reverse)

seq1  TCTTTGGTAGGAAGGCAACTGATCTGTAAACCTGTTACAAAGACACCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTAGGAAGGCAACTGATCTGTAAACCTGTTACAAAGACACCATT  50

seq1  GCATACCCTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTATCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCCTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTATCTCTT  100

seq1  GTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGCCA  150

seq1  GCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGAACC  200

seq1  CAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACAACATTATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACAACATTATGAAC  250

seq1  TAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGAT  300

seq1  GGCCTAGTCGACCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTCGACCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAATT  350

seq1  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTG  400

seq1  GGTAGGGGAGTGGGGGTGGGTGGTTATGGGGGACTTTTGGTACAGCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGAGTGGGGGTGGGTGGTTATGGGGGACTTTTGGTACAGCATTG  450

seq1  GAAATGTAAATGAGCTAAATACCTAATAAAAAAATGGAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAATGAGCTAAATACCTAATAAAAAAATGGAAAAAAAAAAAAA  500

seq1  AGAAACCAGCAAATTCAATGAGAGCTTCCTCATCTGAATCAACGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGCAAATTCAATGAGAGCTTCCTCATCTGAATCAACGGAATTC  550