BAC Information

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BAC

Clone NameB6Ng01-246P09
Chromosome15 (Build37)10 (Build37)
Map Location 94,275,682 - 94,275,803125,535,298 - 125,536,166
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePphln1, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20
Downstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315, Nell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246P09.bB6Ng01-246P09.g
ACCGA055428GA055429
length815952
definitionB6Ng01-246P09.b B6Ng01-246P09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,275,682 - 94,275,803)(125,535,298 - 125,536,166)
sequence
gaattcttccactggtgggacacacatctccttattatataccatagact
gggttctccaggaacttgggcctattcctacatattctattttggcttct
atcattttcgtattaatggctatttcctgagaaaaagtgagactattcta
attttgtataaataatacacaggagactaagatcattaaaaataagaagc
agctttcgtatgtttttcagcattatgcttaactatttttcatttattga
aaatagattctgttcccacataatctatcatgattacagttcccctctct
ctgtttctcccagttccttctcacctccacttctatccccaattacttcc
tttctgtctctcattagaaacgaatagttttttaagatatagcagccaaa
catgacaaaataaaatatactaagataaaacaaagcacatcatattgaag
ttggacatggcaaaccaataggagaaaaagaacccaagagaaggcacaaa
aatcagagacctactcatttaaacacctagaaatcacatgaaaacactaa
tctgaaaaatatatatatataatttacacacacacacatttgacatggtg
cagaactttgcaggccatgtgtatgttgcttttggtctctgtgagttcat
gggagtcatgcttggttgattcagagagtcttgttctccgggtgccctcc
atcccttctggcatttacactctttttgcctcctctcccacagggctccc
tgagctctgaagagtctctctctctctctctctctctctctctctctctc
tctcctctccctctc

gaattcaaagtttttctgcaggaatgtaaaattcaaaaaaaaaatgttag
ttgaaccattctagttggtggaaatctgtgcctcttttcctgttactcta
caaactttgatctctaaagtgctaatgccatttgtagttccattgttcta
tcatatgtaagatggcttaccatagggaattattggtattaacacttata
ccactaagtcaagttcagtatgggtttgcagctctatgtggctttagaaa
gaatgatttcacaaactggatacccagagtcactcactttacttaaaatg
ctaagttaatcttaatcttcttcatttttgtcaactttaaacttcatttt
atctgatatttaaaacatagaggtatgtagttatggtgtatcacataaca
tttttaattcatgtaaatattgtgtaatatcaaatggggttaatacctat
cctttcaagtattatcatgtacttatgaaagtaacctccaaatttagttt
ttctaatttattggaatattgttgctttttgttaactatagctaacctac
tgacaatagattaagcttattactcctgaccacaacctgatacccattga
tcaaacttctccatccccgtccatcctcccagcctctgtaacaatcatca
tgtgactgcctgattctatgaagtcaattttctcagatttcacatatgaa
tgtcatgtgactgtctgattctatgaagtcaattttctcagatttcacat
atgaatgtaattaaccagtatttgcttttctacacctggcttatttcact
tagcgtgatgattttcagttctatttatactttcataagtggcaggacct
catctgtcatggctaaatatcattttatttgtgtatacatatgtactgta
ttttcttcataaattgatgaaaatttattttgattgtatatcttggcaac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_94275682_94275803
seq2: B6Ng01-246P09.b_622_862 (reverse)

seq1  GAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||| |||||   |||||||||||| |||||||||||||||||||||||
seq2  GAGAGGGAGAG---GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  47

seq1  GAGA-----CAGGG---AGAGAG---AGAGAGAGAGCATGGAGTAGGGGA  89
      ||||     ||| |   || |||    | | ||||| | | |  |    |
seq2  GAGACTCTTCAGAGCTCAGGGAGCCCTGTGGGAGAGGAGGCAAAA----A  93

seq1  GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTA-----------------  122
      | ||||  |||   |   |  ||   | | | |                 
seq2  GAGTGTAAATGCCAGAAGGGATG---GAGGGCACCCGGAGAACAAGACTC  140

seq1  --------------------------------------------------  122
                                                        
seq2  TCTGAATCAACCAAGCATGACTCCCATGAACTCACAGAGACCAAAAGCAA  190

seq1  --------------------------------------------------  122
                                                        
seq2  CATACACATGGCCTGCAAAGTTCTGCACCATGTCAAATGTGTGTGTGTGT  240

seq1  -  122
       
seq2  A  241


seq1: chr10_125535298_125536166
seq2: B6Ng01-246P09.g_67_935

seq1  GAATTCAAAGTTTTTCTGCAGGAATGTAAAATTCAAAAAAAAAATGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTTTTCTGCAGGAATGTAAAATTCAAAAAAAAAATGTTAG  50

seq1  TTGAACCATTCTAGTTGGTGGAAATCTGTGCCTCTTTTCCTGTTACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCATTCTAGTTGGTGGAAATCTGTGCCTCTTTTCCTGTTACTCTA  100

seq1  CAAACTTTGATCTCTAAAGTGCTAATGCCATTTGTAGTTCCATTGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTGATCTCTAAAGTGCTAATGCCATTTGTAGTTCCATTGTTCTA  150

seq1  TCATATGTAAGATGGCTTACCATAGGGAATTATTGGTATTAACACTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTAAGATGGCTTACCATAGGGAATTATTGGTATTAACACTTATA  200

seq1  CCACTAAGTCAAGTTCAGTATGGGTTTGCAGCTCTATGTGGCTTTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGTCAAGTTCAGTATGGGTTTGCAGCTCTATGTGGCTTTAGAAA  250

seq1  GAATGATTTCACAAACTGGATACCCAGAGTCACTCACTTTACTTAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTTCACAAACTGGATACCCAGAGTCACTCACTTTACTTAAAATG  300

seq1  CTAAGTTAATCTTAATCTTCTTCATTTTTGTCAACTTTAAACTTCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTAATCTTAATCTTCTTCATTTTTGTCAACTTTAAACTTCATTTT  350

seq1  ATCTGATATTTAAAACATAGAGGTATGTAGTTATGGTGTATCACATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTTAAAACATAGAGGTATGTAGTTATGGTGTATCACATAACA  400

seq1  TTTTTAATTCATGTAAATATTGTGTAATATCAAATGGGGTTAATACCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTCATGTAAATATTGTGTAATATCAAATGGGGTTAATACCTAT  450

seq1  CCTTTCAAGTATTATCATGTACTTATGAAAGTAACCTCCAAATTTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGTATTATCATGTACTTATGAAAGTAACCTCCAAATTTAGTTT  500

seq1  TTCTAATTTATTGGAATATTGTTGCTTTTTGTTAACTATAGCTAACCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTATTGGAATATTGTTGCTTTTTGTTAACTATAGCTAACCTAC  550

seq1  TGACAATAGATTAAGCTTATTACTCCTGACCACAACCTGATACCCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAGATTAAGCTTATTACTCCTGACCACAACCTGATACCCATTGA  600

seq1  TCAAACTTCTCCATCCCCGTCCATCCTCCCAGCCTCTGTAACAATCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCTCCATCCCCGTCCATCCTCCCAGCCTCTGTAACAATCATCA  650

seq1  TGTGACTGCCTGATTCTATGAAGTCAATTTTCTCAGATTTCACATATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGCCTGATTCTATGAAGTCAATTTTCTCAGATTTCACATATGAA  700

seq1  TGTCATGTGACTGTCTGATTCTATGAAGTCAATTTTCTCAGATTTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTGACTGTCTGATTCTATGAAGTCAATTTTCTCAGATTTCACAT  750

seq1  ATGAATGTAATTAACCAGTATTTGCTTTTCTACACCTGGCTTATTTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTAATTAACCAGTATTTGCTTTTCTACACCTGGCTTATTTCACT  800

seq1  TAGCGTGATGATTTTCAGTTCTATTTATACTTTCATAAGTGGCAGGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGATGATTTTCAGTTCTATTTATACTTTCATAAGTGGCAGGACCT  850

seq1  CATCTGTCATGGCTAAATA  869
      |||||||||||||||||||
seq2  CATCTGTCATGGCTAAATA  869


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