BAC Information

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BAC

Clone NameB6Ng01-247F08
Chromosome10 (Build37)
Map Location 19,612,977 - 19,614,158
singlet/doubletsinglet
Overlap genePex7
Upstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3
Downstream geneMap3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247F08.bB6Ng01-247F08.g
ACCGA055695GA055696
length1,1621,180
definitionB6Ng01-247F08.b B6Ng01-247F08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaggatcaacaaacatttcccatgaaaggccagaagtaagtat
tttggcctggagagctattaggtttttgtaacaactacttaattttgtta
ggactgaataaaggcagccacagatgatgcgtaactgagttgattgggct
gtgtgccaactaaacattactcacaaaacctgtctgtgagtcgtgtggct
ctgagggctggagtgtttccacctgtgctctctgctgccttccccgggta
ctctggttaatggaaacgctcttagttaaccaaccctgagccaaggacac
aactatattcaccaagtcatgggtctcagctccaaactcagcctactcat
tgaaaagcccacgtgtgcctcataggttatctagtgttatggaacaaaac
aaaaataataaaacaaaccaccgggcatggtggtgcacacctttagtccc
agcacttgggaggcagaggcaggtggagttctgagttcgaggccagtctg
gtctacagagtgagttccaggacagccagggctgcacagagaaaccctgt
ctcgaagaaccaaaaaaaaaacaaaaaaaacaaacaaacaaaaaaaacaa
accctccttcttaaaatgtatttttaattatgttatgacattataaataa
aaaaaatctgtccatacaaaaaaaagagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaaaaacaaccctaacatttat
tgttaaaaagggttctatctactaaaacacaatctgggactcagtcctct
gaaaatgtttgccatcaggctgacaggcagggaaagaaagaaagaaagat
cctaaagggctgtgactctagttcagtggcagagcacagactctgggctc
aacctccagcattgggggggggggaaaaaaaggaaagaaaaaatttaaat
cccctaagagcacaaatggtatgcactcccattttctctgatcgagagtg
acggcgccacctactggtaaggagtagccacccttcactagtaaggtcag
cttctgagacctcaaaacttactactgagcctgagcgaccatcaggatgt
gagagactgatgtgtctgtatgaaccctcatgtcctagttaccaagagat
tccaacagttgg
gaattctcctctgaagaaacagactgggaggaaaaaacagctcattacca
gccagataaagtgttagctaatcggtcaagaaaaaagccaaaagcggctg
gcgaaggccagcatgctgttcagcctccgggcagtcggcttcaaggtccg
ccctatgcggagcccccgccctgcgtagtgcgtcagccctgcacagagag
acaatgcgcagagagacaatgcgcagagagacaatgcgcagagaggcaat
gcgcagactcattcattcccagagaggaacaaaggaaaatacaacaggca
tttccggtctttgaaggagccgagggtgggcatgtccacgctccagtaga
atatgtgcagataaaagaacttgccgagtcggtccgtaaatacggaacca
atgctaattttaccttggtgcagttagacaggcttgccggcatgacacta
actcctgccgactgacaaacgattgtaaaagccgctctccctagtatggg
caaatatatggaatggagagctctttggcatgaagctgcacaagcgcagg
cccgagcaaacgcagctgctttgactccagagcagagagattggactttt
gacttgttaacgggtcagggagcttattctgctgatcaaacaaactacca
ttggggagcttatgcccaaatttcctccacggctattagggcctaaaagg
cgctctcccgagcaggtaaagccactggacaattaacaaagatcgtccag
ggacctcaggagtccttctcaaattttgtggccagaatgacagaggcagc
agagcgtatttttggagactcagagcaagccgcacctctggtagaacagc
tcatttatgagcaagccacaaaggagtgctgagcggccatagccccaaga
aagaacaaaggcttacaagactggctcagagtttgtcgagagcttggggg
acctctcagcaatacaggtttagcggctgccatcctttcaatcccaaaac
cgctccatgggcagaaatgatcagaggacatgttttactgcgaagcctgg
gcattcttaagaaaggatgcagagcttccagaataaacagcagggacttt
ctcactctttgcctctaagtgtgcagtatccataagagcgacaggtgtcg
cctctgttaaggtaatgataaaggtcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_19612977_19614158
seq2: B6Ng01-247F08.b_45_1206

seq1  GAATTCTCAGGATCAACAAACATTTCCCATGAAAGGCCAGAAGTAAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGATCAACAAACATTTCCCATGAAAGGCCAGAAGTAAGTAT  50

seq1  TTTGGCCTGGAGAGCTATTAGGTTTTTGTAACAACTACTTAATTTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGGAGAGCTATTAGGTTTTTGTAACAACTACTTAATTTTGTTA  100

seq1  GGACTGAATAAAGGCAGCCACAGATGATGCGTAACTGAGTTGATTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAATAAAGGCAGCCACAGATGATGCGTAACTGAGTTGATTGGGCT  150

seq1  GTGTGCCAACTAAACATTACTCACAAAACCTGTCTGTGAGTCGTGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAACTAAACATTACTCACAAAACCTGTCTGTGAGTCGTGTGGCT  200

seq1  CTGAGGGCTGGAGTGTTTCCACCTGTGCTCTCTGCTGCCTTCCCCGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTGGAGTGTTTCCACCTGTGCTCTCTGCTGCCTTCCCCGGGTA  250

seq1  CTCTGGTTAATGGAAACGCTCTTAGTTAACCAACCCTGAGCCAAGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTAATGGAAACGCTCTTAGTTAACCAACCCTGAGCCAAGGACAC  300

seq1  AACTATATTCACCAAGTCATGGGTCTCAGCTCCAAACTCAGCCTACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATTCACCAAGTCATGGGTCTCAGCTCCAAACTCAGCCTACTCAT  350

seq1  TGAAAAGCCCACGTGTGCCTCATAGGTTATCTAGTGTTATGGAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCCACGTGTGCCTCATAGGTTATCTAGTGTTATGGAACAAAAC  400

seq1  AAAAATAATAAAACAAACCACCGGGCATGGTGGTGCACACCTTTAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATAAAACAAACCACCGGGCATGGTGGTGCACACCTTTAGTCCC  450

seq1  AGCACTTGGGAGGCAGAGGCAGGTGGAGTTCTGAGTTCGAGGCCAGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGTGGAGTTCTGAGTTCGAGGCCAGTCTG  500

seq1  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGT  550

seq1  CTCGAAGAACCAAAAAAAAAACAAAAAAAACAAACAAACAAAAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGAACCAAAAAAAAAACAAAAAAAACAAACAAACAAAAAAAACAA  600

seq1  ACCCTCCTTCTTAAAATGTATTTTTAATTATGTTATGACATTATAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTTCTTAAAATGTATTTTTAATTATGTTATGACATTATAAATAA  650

seq1  AAAAAATCTGTCCATACAAAAAAAAGAGAAGAAGAAGAAGAAGAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTGTCCATACAAAAAAAAGAGAAGAAGAAGAAGAAGAAGAAGA  700

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAACAACCCTAACATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAACAACCCTAACATTTAT  750

seq1  TGTTAAAAAGGGTTCTATCTACTAAAACACAATCTGGGACTCAGTCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAAGGGTTCTATCTACTAAAACACAATCTGGGACTCAGTCCTCT  800

seq1  GAAAATGTTTGCCATCAGGCTGACAGGCAGGGAAAGAAAGAAAGAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTGCCATCAGGCTGACAGGCAGGGAAAGAAAGAAAGAAAGAT  850

seq1  CCT-AAGGGCTGTGACTCTAGTTCAGTGGCAGAGCACAGACTCTGGGCTC  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGGCTGTGACTCTAGTTCAGTGGCAGAGCACAGACTCTGGGCTC  900

seq1  AACCTCCAGCATT-GGGGGGGGGAAAAAAAAGGAAAGAAAAAA-TTAAAT  947
      ||||||||||||| ||||||||| ||||||||||||||||||| ||||||
seq2  AACCTCCAGCATTGGGGGGGGGGGAAAAAAAGGAAAGAAAAAATTTAAAT  950

seq1  CCCCTAAGAGCACAAAATGGGTATGCACTCCCATTTTCTCTGAATCGAGA  997
      ||||||||||||||||   ||||||||||||||||||||||| |||||||
seq2  CCCCTAAGAGCACAAA--TGGTATGCACTCCCATTTTCTCTG-ATCGAGA  997

seq1  GTTGACGGCGCCACCTACTGGTAAAGAAGTAGGCCACCCTTCACTAGTAA  1047
      | |||||||||||||||||||| ||| |||| ||||||||||||||||||
seq2  G-TGACGGCGCCACCTACTGGT-AAGGAGTA-GCCACCCTTCACTAGTAA  1044

seq1  -GTCAGGCTTCTGAGAACTCAAAACTTACTTACCTGAGGCTGAAGCGAAA  1096
       |||| |||||||||| |||||||||||||   ||||| ||| ||||  |
seq2  GGTCA-GCTTCTGAGACCTCAAAACTTACT--ACTGAGCCTG-AGCG--A  1088

seq1  CAACCAGGGATGTGAGGAGACCAGATTGTG-CTGTAAATGACACTCTCAT  1145
      | | || |||||||| |||| | || |||| ||||  |||| || |||||
seq2  CCATCA-GGATGTGA-GAGA-CTGA-TGTGTCTGT--ATGA-ACCCTCAT  1131

seq1  GGCCCCTAAAGGTACACAGAGAATTTCCAACAGTTGG  1182
      | ||     || |||  |||||  |||||||||||||
seq2  GTCC----TAGTTACCAAGAGA--TTCCAACAGTTGG  1162