BAC Information

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BAC

Clone NameB6Ng01-247G18
Chromosome10 (Build37)
Map Location 103,941,227 - 104,091,141
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G18.bB6Ng01-247G18.g
ACCGA055761GA055762
length1,2131,057
definitionB6Ng01-247G18.b B6Ng01-247G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,941,227 - 103,942,415)(104,090,107 - 104,091,141)
sequence
gaattcattaggagttactgaaaacctgagagggtgttacaggggcagag
caaagagaaattgaacactaattcaaacacacttgagattagaacggaac
agaagtaacaaaccttcttttctctccacaaagtagatttcatactcttg
aaagagattttatactcttgcaactgtcaaattcaacatcatagcaattt
gtattgttgtgttttcttttgttgtttattgttgttgttgttatctgtaa
cccaggaaaccaccggttagggtgacagcccctctgatttctgtcacctc
actcttttcaattctaacctctacagctgtttaagttttaagaacagaat
tagtttggggacacaaaaagtgtttaaaaaataggtgcttacctccaatt
ctgcttctaggattttaactataacattttaactatgagatttaactata
agattctgcatgtaaagaagttcatagcttgcaatcccaccaacaatgga
ggagtgttcctctttctccacatcctcgacagcatctgctgtcacctgaa
tttttgatcttagccattctgactggtatgagatggaatctcagggctgt
tttgatttgcatttctctgatgattaaggatgctgagcattttttcaggt
gtttctcagccatttggtattcctcaggtgagaattctttgtttagctct
gaaccccattttttaatggggttatttgattttctggagtccaccttctt
gagttctttatatatatattggatattagtcccctatctgatttaggata
ggtaaagattcttttccaatctgttggtggccttttgtcttattgatggt
gtcttttgccttaaagaagttttgcaactttatgaggtcttacttgtctc
tcattataccagtaccatgggcatatatccagaagatgtcccaaccggta
gaaggacacatgctccactaatgttcatagccagccttatttaatatagc
ccagaagctgtaaaggactcaagaatgctcccttgaacagaaggaatggg
atacaaaaaaaaattgggtaccatttaccaatggaagtactactcagcta
ttaaaaagaagggaattttatgaaatccctaggcctaattggattggaac
tctggaaagcatccatctgataggtcaacacaatcattaaaaggaacttc
aaatgtgaatatg
gaattctttgttgggggaccaggaaggatggcaacatttcgaatgtaaat
aaataaaacaataaaaacaataatgctatggaaccaaactggaaaaagac
atatgatattggaaacaggaagtggagattttagtgtaggtgctctgtag
tgtattcatgagaagacagaagtctggagacctaagataggtggggccat
ctgaggatttatggcaaaagtaacaaatgcaagttccataaaatgagact
ataacaagtcattcctgaacacagagatatatagctgacgacaggctgtc
attaaaattttcataagtaattgtatgggctgaagagatggctcagaggt
tcagatcactgactgctctttcagaggacctgagttcaattcctaatcaa
gagacagctcacaactctctgtacctcccagatctgacacccttacacaa
acttgtatgcaggcaaaacaccaatgcagataaataatataaagtaatat
aaaataaaataataaaaataattgtcccaaatcagaaattatgagatgga
tcaagtgtacattgtggaaaaactagatagaggttcatcagtaacaaaga
aaaggattttttcaacttacattcaacctagtccatgtgagcagtctcca
ggggatcagaagagaatgttaacacattctaattctgtccagcaggttct
tgtaaaagatgattactcctgatttttttccttaaggccctcagaattgg
cattatatgccaccctagaacatgtcactatggcaaatgagttaccatga
aattcacagtacttgaacaaattgcagatacaagaaaggaggcattttaa
tctagagagaggagatgaatgctccctggtgaaagatgctctctatatag
taagagatggttatattgccaggaaaatctgtggaaacaaatcttttcaa
taattcttacctttcttcagttcccaatacattgtcttctttcctgaagt
tacctctctattcagctaacatggaagcattttcgtttgtgtatcgcttc
cggtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103941227_103942415
seq2: B6Ng01-247G18.b_46_1258

seq1  GAATTCATTAGGAGTTACTGAAAACCTGAGAGGGTGTTACAGGGGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGAGTTACTGAAAACCTGAGAGGGTGTTACAGGGGCAGAG  50

seq1  CAAAGAGAAATTGAACACTAATTCAAACACACTTGAGATTAGAACGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAATTGAACACTAATTCAAACACACTTGAGATTAGAACGGAAC  100

seq1  AGAAGTAACAAACCTTCTTTTCTCTCCACAAAGTAGATTTCATACTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAACAAACCTTCTTTTCTCTCCACAAAGTAGATTTCATACTCTTG  150

seq1  AAAGAGATTTTATACTCTTGCAACTGTCAAATTCAACATCATAGCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATTTTATACTCTTGCAACTGTCAAATTCAACATCATAGCAATTT  200

seq1  GTATTGTTGTGTTTTCTTTTGTTGTTTATTGTTGTTGTTGTTATCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTGTGTTTTCTTTTGTTGTTTATTGTTGTTGTTGTTATCTGTAA  250

seq1  CCCAGGAAACCACCGGTTAGGGTGACAGCCCCTCTGATTTCTGTCACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAACCACCGGTTAGGGTGACAGCCCCTCTGATTTCTGTCACCTC  300

seq1  ACTCTTTTCAATTCTAACCTCTACAGCTGTTTAAGTTTTAAGAACAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTCAATTCTAACCTCTACAGCTGTTTAAGTTTTAAGAACAGAAT  350

seq1  TAGTTTGGGGACACAAAAAGTGTTTAAAAAATAGGTGCTTACCTCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGGGACACAAAAAGTGTTTAAAAAATAGGTGCTTACCTCCAATT  400

seq1  CTGCTTCTAGGATTTTAACTATAACATTTTAACTATGAGATTTAACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTAGGATTTTAACTATAACATTTTAACTATGAGATTTAACTATA  450

seq1  AGATTCTGCATGTAAAGAAGTTCATAGCTTGCAATCCCACCAACAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCATGTAAAGAAGTTCATAGCTTGCAATCCCACCAACAATGGA  500

seq1  GGAGTGTTCCTCTTTCTCCACATCCTCGACAGCATCTGCTGTCACCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTCCTCTTTCTCCACATCCTCGACAGCATCTGCTGTCACCTGAA  550

seq1  TTTTTGATCTTAGCCATTCTGACTGGTATGAGATGGAATCTCAGGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATCTTAGCCATTCTGACTGGTATGAGATGGAATCTCAGGGCTGT  600

seq1  TTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCATTTTTTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCATTTTTTCAGGT  650

seq1  GTTTCTCAGCCATTTGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAGCCATTTGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCT  700

seq1  GAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTT  750

seq1  GAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTGATTTAGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTGATTTAGGATA  800

seq1  GGTAAAGATTCTTTTCCAATCTGTTGGTGGCCTTTTGTCTTATTGATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGATTCTTTTCCAATCTGTTGGTGGCCTTTTGTCTTATTGATGGT  850

seq1  GTCTTTTGCCTTAAAGAAGTTTTGCAACTTTATGAGGTC-TACTTGTCTC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCTTTTGCCTTAAAGAAGTTTTGCAACTTTATGAGGTCTTACTTGTCTC  900

seq1  TCATTATACCAGTACCATGGGCATATATCCAGAAGATGTCCCAACCGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATTATACCAGTACCATGGGCATATATCCAGAAGATGTCCCAACCGGT-  949

seq1  AGAAGGACACATGCTCCACT-ATGTTCATAG-CAGCCTTATTTATAATAG  997
      |||||||||||||||||||| |||||||||| ||||||||||||  ||||
seq2  AGAAGGACACATGCTCCACTAATGTTCATAGCCAGCCTTATTTAATATAG  999

seq1  -CCAGAAGCTGTAAAGAACCCA--GATG--CCCCTGAACAG-AGGAAT-G  1040
       ||||||||||||||| || ||   |||  ||| ||||||| |||||| |
seq2  CCCAGAAGCTGTAAAGGACTCAAGAATGCTCCCTTGAACAGAAGGAATGG  1049

seq1  GATACAAAAAAAA--TTGGTA-CATTTACACAATGG-AGTACTACTCAGC  1086
      |||||||||||||  | |||| ||||||| |||||| |||||||||||||
seq2  GATACAAAAAAAAATTGGGTACCATTTAC-CAATGGAAGTACTACTCAGC  1098

seq1  TATTAAAAAGAATG--AATTTATGAAATTCCTAGGC--AAATGGA-TGGA  1131
      |||||||||||| |  | |||||||||| |||||||  || |||| ||||
seq2  TATTAAAAAGAAGGGAATTTTATGAAATCCCTAGGCCTAATTGGATTGGA  1148

seq1  --CCTGGAGGGAATCATCCTGAGTAAGGTAACACAATCAT--AAAAGAAC  1177
         |||||  | |||   |||| || |  |||||||||||  ||| ||||
seq2  ACTCTGGAAAGCATCCATCTGA-TAGGTCAACACAATCATTAAAAGGAAC  1197

seq1  -TCAAATG---ATATG  1189
       |||||||   |||||
seq2  TTCAAATGTGAATATG  1213

seq1: chr10_104090107_104091141
seq2: B6Ng01-247G18.g_93_1124 (reverse)

seq1  GATACCCGAAGCGATACACAAACGAAAATGCTTCCATGTTAGCTGAATAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCGGAAGCGATACACAAACGAAAATGCTTCCATGTTAGCTGAATAG  50

seq1  AGAGGTAACTTCAGGAAAGAAAGACAATGTATTGGGAAACTGAAGAAAGG  100
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  AGAGGTAACTTCAGGAAAG-AAGACAATGTATTGGG-AACTGAAGAAAGG  98

seq1  TAAGAATTATTTGAAAAGATTTGTTTCCACAGATTTTCCTGGGCAATATA  150
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TAAGAATTA-TTGAAAAGATTTGTTTCCACAGATTTTCCT-GGCAATATA  146

seq1  ACCATCTCTTACTATATAGAGAGCATCTTTCACCAGGGAGCATTCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTACTATATAGAGAGCATCTTTCACCAGGGAGCATTCATCTC  196

seq1  CTCTCTCTAGATTAAAATGCCTCCTTTCTTGTATCTGCAATTTGTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTAGATTAAAATGCCTCCTTTCTTGTATCTGCAATTTGTTCAAG  246

seq1  TACTGTGAA-TTCATGGTAACTCATTTGCCATAGTGACATGTTCTAGGGT  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAATTTCATGGTAACTCATTTGCCATAGTGACATGTTCTAGGGT  296

seq1  GGCATATAATGCCAATTCTGAGGGCCTTAAGGAAAAAAATCAGGAGTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAATGCCAATTCTGAGGGCCTTAAGGAAAAAAATCAGGAGTAAT  346

seq1  CATCTTTTACAAGAACCTGCTGGACAGAATTAGAATGTGTTAACATTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTACAAGAACCTGCTGGACAGAATTAGAATGTGTTAACATTCTC  396

seq1  TTCTGATCCCCTGGAGACTGCTCACATGGACTAGGTTGAATGTAAGTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCCCTGGAGACTGCTCACATGGACTAGGTTGAATGTAAGTTGA  446

seq1  AAAAATCCTTTTCTTTGTTACTGATGAACCTCTATCTAGTTTTTCCACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTTTTCTTTGTTACTGATGAACCTCTATCTAGTTTTTCCACAA  496

seq1  TGTACACTTGATCCATCTCATAATTTCTGATTTGGGACAATTATTTTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTTGATCCATCTCATAATTTCTGATTTGGGACAATTATTTTTAT  546

seq1  TATTTTATTTTATATTACTTTATATTATTTATCTGCATTGGTGTTTTGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTATATTACTTTATATTATTTATCTGCATTGGTGTTTTGCC  596

seq1  TGCATACAAGTTTGTGTAAGGGTGTCAGATCTGGGAGGTACAGAGAGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAAGTTTGTGTAAGGGTGTCAGATCTGGGAGGTACAGAGAGTTG  646

seq1  TGAGCTGTCTCTTGATTAGGAATTGAACTCAGGTCCTCTGAAAGAGCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTCTCTTGATTAGGAATTGAACTCAGGTCCTCTGAAAGAGCAGT  696

seq1  CAGTGATCTGAACCTCTGAGCCATCTCTTCAGCCCATACAATTACTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCTGAACCTCTGAGCCATCTCTTCAGCCCATACAATTACTTATG  746

seq1  AAAATTTTAATGACAGCCTGTCGTCAGCTATATATCTCTGTGTTCAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAATGACAGCCTGTCGTCAGCTATATATCTCTGTGTTCAGGAA  796

seq1  TGACTTGTTATAGTCTCATTTTATGGAACTTGCATTTGTTACTTTTGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTTATAGTCTCATTTTATGGAACTTGCATTTGTTACTTTTGCCA  846

seq1  TAAATCCTCAGATGGCCCCACCTATCTTAGGTCTCCAGACTTCTGTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTCAGATGGCCCCACCTATCTTAGGTCTCCAGACTTCTGTCTTC  896

seq1  TCATGAATACACTACAGAGCACCTACACTAAAATCTCCACTTCCTGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATACACTACAGAGCACCTACACTAAAATCTCCACTTCCTGTTTC  946

seq1  CAATATCATATGTCTTTTTCCAGTTTGGTTCCATAGCATTATTGTTTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCATATGTCTTTTTCCAGTTTGGTTCCATAGCATTATTGTTTTTA  996

seq1  TTGTTTTATTTATTTACATTCGAAATGTTGCCATCC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTTATTTACATTCGAAATGTTGCCATCC  1032