BAC Information

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BAC

Clone NameB6Ng01-248J14
Chromosome10 (Build37)
Map Location 61,546,581 - 61,684,220
singlet/doubletdoublet
Overlap gene2010107G23Rik, Neurog3, Tspan15
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466
Downstream geneTacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J14.bB6Ng01-248J14.g
ACCGA056633GA056634
length1,087255
definitionB6Ng01-248J14.b B6Ng01-248J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,546,581 - 61,547,672)(61,683,966 - 61,684,220)
sequence
gaattctccctcggcagctctcagcatggagcctgtcacaagtgtccctc
ttgactcaaggctacagagctgctcttgacttacaggacagcgaaaggtc
tccttccacacccagcaagagcatctctgcagctctcagaaactagggga
cagtcaatctctgcttagagaaggggtccctgtcagcctcagggaagcct
cttgctttccattgccaacctcagtaccctggatttcctgtgactgcagg
aaacccaggtggccctggctttgcctgggaggcagaacttggcaacaagg
ggaccagagtagaaagctggggtcaccatctggtcctctcagggggtctc
aggaaactttccctttgctcctgacagggtttcccccttaccctggagac
caaagctgccttctgccagtggacaccagagaaagacctgccctcctctg
cttgactagatctacttactcagcactttggggacagttgtcactcccac
aaaaaggctttgtccttgctgttcccaggcttaccattcctgatctaggg
caggaatctcattctctgcaggtgaggtccccagggctcacagaaatgct
gctgtccttgtccctgaccctgccctacccctggccatctctctgtctct
gtctcaggcatgcacacacaccctcaccctttcatcccggcaagtccacg
ttcctcaggcgacattcttacccatgctgagccacttgtaaaataccagt
tcctgtcacagacactcaggtggcagggccagtgagatacaaaggactct
gagggacgccagagttcagagtggcatctgagactctgagactttagtat
tagtcttgtgctgacaattccttccaatttggggcagagggaggggacta
gaaatctaggttttttaggtatagattctcaattgaaataccaactgctt
actcgaaactagtgatgcaaagaatagtgggtactgctgagatggctcag
cggtgagagcactgaccgctctccagaggttcctgagtcattccagccac
cacttgtggcctcacaaccatctgcagtgggatccga
ccactttaggtgttctggtcaaagaaagtcttcaccaggagctggcttgg
ggggggggttgcaattgacaaggaacatcccgtagagaacaccccaggca
ggcagggcaggcaggcaggtgggcagggtagggcagggcaggcaggcagg
cagggtgcaaagtacaaaggccatgaggcaggcaaggcagggccgaggct
ggtgcagaggaggaacctagaagaagccagatatgggtggagagggagag
gggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61546581_61547672
seq2: B6Ng01-248J14.b_50_1136

seq1  GAATTCTCCCTCGGCAGCTCTCAGCATGGAGCCTGTCACAAGTGTCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCGGCAGCTCTCAGCATGGAGCCTGTCACAAGTGTCCCTC  50

seq1  TTGACTCAAGGCTACAGAGCTGCTCTTGACTTACAGGACAGCGAAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAAGGCTACAGAGCTGCTCTTGACTTACAGGACAGCGAAAGGTC  100

seq1  TCCTTCCACACCCAGCAAGAGCATCTCTGCAGCTCTCAGAAACTAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACACCCAGCAAGAGCATCTCTGCAGCTCTCAGAAACTAGGGGA  150

seq1  CAGTCAATCTCTGCTTAGAGAAGGGGTCCCTGTCAGCCTCAGGGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATCTCTGCTTAGAGAAGGGGTCCCTGTCAGCCTCAGGGAAGCCT  200

seq1  CTTGCTTTCCATTGCCAACCTCAGTACCCTGGATTTCCTGTGACTGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCCATTGCCAACCTCAGTACCCTGGATTTCCTGTGACTGCAGG  250

seq1  AAACCCAGGTGGCCCTGGCTTTGCCTGGGAGGCAGAACTTGGCAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGTGGCCCTGGCTTTGCCTGGGAGGCAGAACTTGGCAACAAGG  300

seq1  GGACCAGAGTAGAAAGCTGGGGTCACCATCTGGTCCTCTCAGGGGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGTAGAAAGCTGGGGTCACCATCTGGTCCTCTCAGGGGGTCTC  350

seq1  AGGAAACTTTCCCTTTGCTCCTGACAGGGTTTCCCCCTTACCCTGGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTTTCCCTTTGCTCCTGACAGGGTTTCCCCCTTACCCTGGAGAC  400

seq1  CAAAGCTGCCTTCTGCCAGTGGACACCAGAGAAAGACCTGCCCTCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGCCTTCTGCCAGTGGACACCAGAGAAAGACCTGCCCTCCTCTG  450

seq1  CTTGACTAGATCTACTTACTCAGCACTTTGGGGACAGTTGTCACTCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAGATCTACTTACTCAGCACTTTGGGGACAGTTGTCACTCCCAC  500

seq1  AAAAAGGCTTTGTCCTTGCTGTTCCCAGGCTTACCATTCCTGATCTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCTTTGTCCTTGCTGTTCCCAGGCTTACCATTCCTGATCTAGGG  550

seq1  CAGGAATCTCATTCTCTGCAGGTGAGGTCCCCAGGGCTCACAGAAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCTCATTCTCTGCAGGTGAGGTCCCCAGGGCTCACAGAAATGCT  600

seq1  GCTGTCCTTGTCCCTGACCCTGCCCTACCCCTGGCCATCTCTCTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTTGTCCCTGACCCTGCCCTACCCCTGGCCATCTCTCTGTCTCT  650

seq1  GTCTCAGGCATGCACACACACCCTCACCCTTTCATCCCGGCAAGTCCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGCATGCACACACACCCTCACCCTTTCATCCCGGCAAGTCCACG  700

seq1  TTCCTCAGGCGACATTCTTACCCATGCTGAGCCACTTGTAAAATACCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGGCGACATTCTTACCCATGCTGAGCCACTTGTAAAATACCAGT  750

seq1  TCCTGTCACAGACACTCAGGTGGCAGGGCCAGTGAGATACAAAGGACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCACAGACACTCAGGTGGCAGGGCCAGTGAGATACAAAGGACTCT  800

seq1  GAGGGACGCCAGAGTTCAGAGTGGCATCTGAGACTCTGAGAC-TTAGTAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGGACGCCAGAGTTCAGAGTGGCATCTGAGACTCTGAGACTTTAGTAT  850

seq1  TAGTCTTGTGCTGACAATT-CTTCCAATTTGGGGCAGAGGGGAGGGGACT  898
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TAGTCTTGTGCTGACAATTCCTTCCAATTTGGGGCAGA-GGGAGGGGACT  899

seq1  AGAAATCTAGG-TTTTTAGGTATAAGATTCTCAAATTGAAATACCAACTG  947
      ||||||||||| ||||||||||| |||||||| |||||||||||||||||
seq2  AGAAATCTAGGTTTTTTAGGTAT-AGATTCTC-AATTGAAATACCAACTG  947

seq1  CTAACTCGAAACTAGTGATGCAAAAGAATAGTGGGTACTGGTGAGATGGC  997
      || |||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CTTACTCGAAACTAGTGATGC-AAAGAATAGTGGGTACTGCTGAGATGGC  996

seq1  TCAGCGGTTGAGAGCACTGACGGCTCTTCCAGAGG-TCCTGAGTTCAATT  1046
      ||||||| ||||||||||||| |||| |||||||| ||||||| |||  |
seq2  TCAGCGG-TGAGAGCACTGACCGCTC-TCCAGAGGTTCCTGAG-TCA--T  1041

seq1  CCCAGCAACCACTTGGTGGCTCACAACCATCTGCAGTGGGATCCGA  1092
       ||||| ||||||||  | |||||||||||||||||||||||||||
seq2  TCCAGCCACCACTTGTGGCCTCACAACCATCTGCAGTGGGATCCGA  1087

seq1: chr10_61683966_61684220
seq2: B6Ng01-248J14.g_73_327 (reverse)

seq1  ATCCCCTCTCCCTCTCCACCCATATCTGGCTTCTTCTAGGTTCCTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTCCCTCTCCACCCATATCTGGCTTCTTCTAGGTTCCTCCTCT  50

seq1  GCACCAGCCTCGGCCCTGCCTTGCCTGCCTCATGGCCTTTGTACTTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCCTCGGCCCTGCCTTGCCTGCCTCATGGCCTTTGTACTTTGCA  100

seq1  CCCTGCCTGCCTGCCTGCCCTGCCCTACCCTGCCCACCTGCCTGCCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTGCCTGCCTGCCCTGCCCTACCCTGCCCACCTGCCTGCCTGCC  150

seq1  CTGCCTGCCTGGGGTGTTCTCTACGGGATGTTCCTTGTCAATTGCAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTGGGGTGTTCTCTACGGGATGTTCCTTGTCAATTGCAACCC  200

seq1  CCCCCCCAAGCCAGCTCCTGGTGAAGACTTTCTTTGACCAGAACACCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAAGCCAGCTCCTGGTGAAGACTTTCTTTGACCAGAACACCTAA  250

seq1  AGTGG  255
      |||||
seq2  AGTGG  255