BAC Information

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BAC

Clone NameB6Ng01-248L06
Chromosome10 (Build37)12 (Build37)
Map Location 28,496,319 - 28,497,51110,331,055 - 10,331,298
singlet/doubletsingletsinglet
Overlap geneE430004N04Rik
Upstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248L06.bB6Ng01-248L06.g
ACCGA056712GA056713
length1,175472
definitionB6Ng01-248L06.b B6Ng01-248L06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,496,319 - 28,497,511)(10,331,055 - 10,331,298)
sequence
gaattcctgcttccatgtctcaagtattgggattacaagtatgcattcaa
cttgaatttggttttgacacaagcatttttccattagatttgtcttttgt
cttttatgacacatcgtatagttattcacataggaatccagaaaaggtgg
ttgcagtgaaagaaacaaagtcaaatagttaacagtatgaggtttctatg
attccatggctagggagaaggtggtttgcttgttttgttttttgttactt
ttcctgctatagctgtgtccaaggctagaattttctgtagtgctttcatt
ctttaggggttcctttgtagaatcttagatgtcagtcttttattcagaac
tctgttaacatatacgagtaggcaaaacttttgtgggtggtgtattgcat
tatcttataattcgggcttagtcattcagtgagtctgtgtatctgtgata
tggcttttgtgtttctcagcctcttccccctctcctacagaggtgacaaa
ctgcctatcctgagctggacttgggtatttcccatcccctgtgcggaaat
agaagagttaattgggtatttctcccccccccccatgtagaacctaaagt
agcatttgtttgagttggataattcctgtcttcccattgtttaggctttg
gtaaaaccccacatgtttgttaggctcttatcaaataatcgtccctacat
ttgttctttaaagcgatcagaggctctggcagctgctcttttcttcactt
tgcaaaatgcacaatggggtttttctctagtcttcatgtagataatctgc
tgtggtttctggaaagaaggcccaggaaagagtaggaggctctgcaagta
cagtctcacagttagtttcctgttcacttatagattccaggaactaatca
atacccctaaggttcttacccgtgtccaggcaccaatcgaggttctttct
tgcagtgaactaagcttctgcatcacttcattctggtgagctaaaacaca
atcaccatgcctacttcctgtgtgtttagaacatataacaaaatggattt
gtcagtgttttttttctttccctgagaattaaaactgagcctgaagagtc
acttggcatattagactctttatatctattagtaatgatgtgacagtacc
atcctaggagcaggccattgaatga

cttatctctccaaaacatttaacataaaggggtgctgcattttgttaagt
gattttttttagctaatttaaatataactcacttaactaatgagattttt
ttttggagtttttttatctagtggattacattaatggggttttgtatatt
gaaccaaccttatatccctgagatgaagcccacttgatcatggtgaatga
tggttttgatgtgttcttggtttcagttttcaaaaattttatttagtatt
ttttcactgatattcataaatgaaattggtcttgaagttctccttttttt
ggttttgtctttgtgtgatttaggtatcagagtgattgtggcttcataga
aggaataaggtagtcatccttctgtttcatttttggactagtttgaggag
tattggtagtaccacttcttcaaagatctgatgcaattctgcattaaagc
tgtctggtcctgggcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28496319_28497511
seq2: B6Ng01-248L06.b_48_1222

seq1  GAATTCCTGCTTCCATGTCTCAAGTATTGGGATTACAAGTATGCATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTCCATGTCTCAAGTATTGGGATTACAAGTATGCATTCAA  50

seq1  CTTGAATTTGGTTTTGACACAAGCATTTTTCCATTAGATTTGTCTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTGGTTTTGACACAAGCATTTTTCCATTAGATTTGTCTTTTGT  100

seq1  CTTTTATGACACATCGTATAGTTATTCACATAGGAATCCAGAAAAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGACACATCGTATAGTTATTCACATAGGAATCCAGAAAAGGTGG  150

seq1  TTGCAGTGAAAGAAACAAAGTCAAATAGTTAACAGTATGAGGTTTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGAAAGAAACAAAGTCAAATAGTTAACAGTATGAGGTTTCTATG  200

seq1  ATTCCATGGCTAGGGAGAAGGTGGTTTGCTTGTTTTGTTTTTTGTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGCTAGGGAGAAGGTGGTTTGCTTGTTTTGTTTTTTGTTACTT  250

seq1  TTCCTGCTATAGCTGTGTCCAAGGCTAGAATTTTCTGTAGTGCTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTATAGCTGTGTCCAAGGCTAGAATTTTCTGTAGTGCTTTCATT  300

seq1  CTTTAGGGGTTCCTTTGTAGAATCTTAGATGTCAGTCTTTTATTCAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGGTTCCTTTGTAGAATCTTAGATGTCAGTCTTTTATTCAGAAC  350

seq1  TCTGTTAACATATACGAGTAGGCAAAACTTTTGTGGGTGGTGTATTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAACATATACGAGTAGGCAAAACTTTTGTGGGTGGTGTATTGCAT  400

seq1  TATCTTATAATTCGGGCTTAGTCATTCAGTGAGTCTGTGTATCTGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATAATTCGGGCTTAGTCATTCAGTGAGTCTGTGTATCTGTGATA  450

seq1  TGGCTTTTGTGTTTCTCAGCCTCTTCCCCCTCTCCTACAGAGGTGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTGTTTCTCAGCCTCTTCCCCCTCTCCTACAGAGGTGACAAA  500

seq1  CTGCCTATCCTGAGCTGGACTTGGGTATTTCCCATCCCCTGTGCGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATCCTGAGCTGGACTTGGGTATTTCCCATCCCCTGTGCGGAAAT  550

seq1  AGAAGAGTTAATTGGGTATTTCTCCCCCCCCCCCATGTAGAACCTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTTAATTGGGTATTTCTCCCCCCCCCCCATGTAGAACCTAAAGT  600

seq1  AGCATTTGTTTGAGTTGGATAATTCCTGTCTTCCCATTGTTTAGGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTTTGAGTTGGATAATTCCTGTCTTCCCATTGTTTAGGCTTTG  650

seq1  GTAAAACCCCACATGTTTGTTAGGCTCTTATCAAATAATCGTCCCTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCCCACATGTTTGTTAGGCTCTTATCAAATAATCGTCCCTACAT  700

seq1  TTGTTCTTTAAAGCGATCAGAGGCTCTGGCAGCTGCTCTTTTCTTCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTAAAGCGATCAGAGGCTCTGGCAGCTGCTCTTTTCTTCACTT  750

seq1  TGCAAAATGCACAATGGGGTTTTTCTCTAGTCTTCATGTAGATAATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGCACAATGGGGTTTTTCTCTAGTCTTCATGTAGATAATCTGC  800

seq1  TGTGGTTTCTGGAAAGAAGGCCCAGGAAAGAGTAGGAGGCTCTGCAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGGTTTCTGGAAAGAAGGCCCAGGAAAGAGTAGGAGGCTCTGC-AAGT  849

seq1  ACAGTCTCACAGGTTAGTTTCCTGTTCACTTATAGATTCCAGGAACTAAT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCACA-GTTAGTTTCCTGTTCACTTATAGATTCCAGGAACTAAT  898

seq1  CAATACCCCTAAAGGTTCTTACCCGTGTCCAGGCACCAATCGAGGTTC-T  949
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  CAATACCCCT-AAGGTTCTTACCCGTGTCCAGGCACCAATCGAGGTTCTT  947

seq1  TCTTGCAGTGAACTAAAGCTCTGCATCACCTTCATTCTGGTTGGAGCTAA  999
      ||||||||||||||||   ||||||||| ||||||||||||  |||||||
seq2  TCTTGCAGTGAACTAAGCTTCTGCATCA-CTTCATTCTGGT--GAGCTAA  994

seq1  AACAC-ATCACCATGCTACCTTCCTGTGTGTTTAG-ACATATACAAAAAT  1047
      ||||| ||||||||||   |||||||||||||||| |||||||  |||||
seq2  AACACAATCACCATGCCTACTTCCTGTGTGTTTAGAACATATAACAAAAT  1044

seq1  GGTTTTGTTCAGTGTTTTTTCTTTTCCACTGAAGAATAAAAACTTGAGCT  1097
      || |||| |||||||||||| | || | ||| ||||| ||||| ||||| 
seq2  GGATTTG-TCAGTGTTTTTTTTCTTTCCCTG-AGAATTAAAAC-TGAGCC  1091

seq1  TAAAAGAGTTCACTTTGGCAATATTAGACTCTTATATCCCTATTATGTTA  1147
      |  ||||| |||| ||||| ||||||||||||| |||  |||||| || |
seq2  T-GAAGAG-TCAC-TTGGC-ATATTAGACTCTT-TATATCTATTA-GTAA  1135

seq1  TATAAATGTGACAAATACTCATTCTATAGAGCAGGCCATTGAATGA  1193
      |    ||||||| | ||| ||| |||  ||||||||||||||||||
seq2  T---GATGTGAC-AGTAC-CATCCTA-GGAGCAGGCCATTGAATGA  1175


seq1: chr12_10331055_10331298
seq2: B6Ng01-248L06.g_274_543 (reverse)

seq1  AAAAAAAGCCCAGGACCAGATGGATTTAGTGCAGAGTTCTATCAGACCTT  50
      ||||||||||||||||||||  | |||| |||||| ||  |||||| |||
seq2  AAAAAAAGCCCAGGACCAGACAGCTTTAATGCAGAATTGCATCAGATCTT  50

seq1  CAAATAAGATCTAATTCCAGTACTTCACAAACTATTCCCCAAAATAGAAG  100
        || |||   || | ||| |||| | ||||||| |  ||||||  ||| 
seq2  TGAAGAAGTGGTACTACCAATACTCCTCAAACTAGT--CCAAAAATGAAA  98

seq1  CAGAAGGA-CTCTATCCAATTCATTCTATGAAGCCACAATTACTCTGATA  149
      ||||||||   ||| |  |||| ||||||||||||||||| |||||||||
seq2  CAGAAGGATGACTACCTTATTCCTTCTATGAAGCCACAATCACTCTGATA  148

seq1  CCTAAATCACAGAAAGAC---------------------------CCAAT  172
      ||||||||||| ||||||                           |||||
seq2  CCTAAATCACACAAAGACAAAACCAAAAAAAGGAGAACTTCAAGACCAAT  198

seq1  TTCCCTCATGAATATCAATGCAAAAATCCTCAATAAAATTCTCACTAACC  222
      |||  | |||||||||| || |||||| || ||||||||| |    ||| 
seq2  TTCATTTATGAATATCAGTGAAAAAATACTAAATAAAATTTTTGAAAACT  248

seq1  GAATCCAAGAACACATCAAAAC  244
      ||| ||||||||||||||||||
seq2  GAAACCAAGAACACATCAAAAC  270


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