BAC Information

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BAC

Clone NameB6Ng01-249B09
Chromosome10 (Build37)
Map Location 64,309,170 - 64,310,342
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B09.bB6Ng01-249B09.g
ACCGA056995GA056996
length1,2081,172
definitionB6Ng01-249B09.b B6Ng01-249B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgaaggcacagcatacccaaactcctgggagataat
gaaagtagtattcaggaaagctcataccagtaagtgccttcataaagaaa
ttggagagatctcgtactgtcaacataacagcccacctgaaagctctgga
acaaaaagaagcaaacatacccaagaggaggagagggcaggaattagtca
aactcagggctgaaatcaatcaattaaaaacaaagagaacattacaaaga
accaacaaaaccaagagctagatctttgagaaaaatcaacaagataggca
aatccttagctaaactaactaaaagccacagaaatagtatgtaaataaac
aaaatcagaaatggaaagggagacataacaacagaactagatgaagttca
aaaaaatcattaggtcttacttcaaaaggctatacttcacgaaaatgtaa
aatctaatggaaatggatgattttctagacaaatactacttaccaaagtt
aaatcaagatcaggtgagtaatctaactggctctataaccaataaggaag
tagaagcagccattcaaagtttcccagccaaaataagcttagggccagat
tgctttagtgtacaattctaccatactttcaaagaagagttaataccaat
atttgttgagaacggttttctgcttctctgaaacagagagagagaaaaaa
aaaagagaaagagtgagaggaaaatgtctgcctgccagacagagtcaaaa
caggtcaggacctgttggcagatttcctggcctgctgcagcatggagcat
taagaggaggtgcacctgagtctctatggtaggggctgaagattctattg
accttcatagaaggaagagaggttttgggatgggaacaaatatcttgtgt
acattgtagcaaattgtttctgttagcttgtggctttgcttcccatggta
ttattgcgtaaaaaggctttaagtaatacacttcctgctattttgggtaa
tgacctgcagccctcccattatctggctcttacatattttcctatctttc
ttttattcatcatcacttctcactcacaggactgtttgaactttgcacca
gcaggatcagtgcaaatacttctcacctattcactagagatcggaagaac
ttactagtcttctatagaacacgttactctggattcctaaaaccatgtgc
aaaagaga

gaattcaacaaattcgcttctaaattggaataattttttttagtccttcc
atactttgtcttaaaatacattctggttttcctaatttatttaatttttt
ctagacttatctataatttctataatgtctactattaagaacttacatca
ggaaagattttggactaggctactatgataggaaaccaaagctagaataa
agtttgtgctccattttgcaaaacaaacaagcaaacaaacaaataaacaa
atggactgaagatttttcacagatgaaattataagattttattatcattt
ccagtgctaatcagtttgactaccaacaatagtcaacttatggtaaattt
ctttccatgatgaaatgttcctttgaaagttaggctcctcctcttctgaa
aaactggggaaattggagagaatgtggcatagctttcaaatgaatggttc
ccacctttcagagaaagacattaatatgctataaaatggacaagctttta
agaatatttgtttctcaaagaggcaaagaaataatttacaatcataaatg
taatagagtagagagtcccattgggaatgattgaaagtttattcatgctc
agggaagcataagtacattctagtcatgtccttagttcaggttctgacat
ggtctcctgcatcaggtcctggcattgtatctgtatccacttttattgcc
tctcattctctatcttaaactcaagtgatatttctaaaggcacttgatat
ttaccaccatacattgaaaataagactctgggtctgagtgccatttcttg
tgatgttcatattaaattcagcctacctctgccatgtgtaaggtacctct
agatttgttgcttgcttctatcttccacatctcaggtcaactggttccct
ctagccccacctctttctatatcagctgctattaggcgtttgacttcctc
tcaagcatttatctacctgtgaaggtcatagtcacatcagtacctttttt
ttttttcttcctcaccagtaaatacttattcttccatagaatctacatgg
ctcagaatttcaatattctaaacagcctcacctcaatcatgcacagtgat
acaaatttcttcctagcatagcaatcatgttagccatgaatttccaattc
tgcctttgaaactctaatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64309170_64310342
seq2: B6Ng01-249B09.g_67_1238

seq1  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50

seq1  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100

seq1  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150

seq1  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200

seq1  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250

seq1  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300

seq1  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350

seq1  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400

seq1  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450

seq1  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500

seq1  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550

seq1  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600

seq1  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650

seq1  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700

seq1  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATAT  750

seq1  TTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTTG  800

seq1  TGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTCT  850

seq1  AGATTTGTTGCTTGCTTCTATCTTCCACATCTCAGGTCAACTGGTTCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTTGCTTGCTTCTATCTTCCACATCTCAGGTCAACTGGTTCCCT  900

seq1  CTAGCCCCACCTCTTTCTATATCAGCTGCTATTAGGCGTTTGACTTCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCACCTCTTTCTATATCAGCTGCTATTAGGCGTTTGACTTCCTC  950

seq1  TCAAGCATTTATCTACCTGTGAAGGTCATAGTCACATCAGTACC--TTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TCAAGCATTTATCTACCTGTGAAGGTCATAGTCACATCAGTACCTTTTTT  1000

seq1  TTTTTTCTTCCTCACCAGTAAATACTTATTCTTCCATAGAATTCTACATT  1048
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TTTTTTCTTCCTCACCAGTAAATACTTATTCTTCCATAGAA-TCTACA-T  1048

seq1  GGCTCAGAATTTC-ATA-TCTAAACAGCCTCA-CTCAATCATGCACCAGT  1095
      ||||||||||||| ||| |||||||||||||| |||||||||||| ||||
seq2  GGCTCAGAATTTCAATATTCTAAACAGCCTCACCTCAATCATGCA-CAGT  1097

seq1  GATACAAATATCTTCATAGCATAGCATTCATTGTTAGCATGGAATTTCTC  1145
      ||||||||| ||||| |||||||||| ||| |||||||   |||||||  
seq2  GATACAAATTTCTTCCTAGCATAGCAATCA-TGTTAGCCATGAATTTCCA  1146

seq1  ATTCTGGCTTTTGAACTCTAAATTAGAG  1173
      |||||| ||||  ||||||||  |||||
seq2  ATTCTGCCTTTGAAACTCTAA--TAGAG  1172


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