BAC Information

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BAC

Clone NameB6Ng01-249B13
Chromosome10 (Build37)
Map Location 78,337,318 - 78,338,473
singlet/doubletsinglet
Overlap genenone
Upstream geneC330046G03Rik, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356
Downstream geneGA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B13.g
ACCGA057003
length1,161
definitionB6Ng01-249B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgaatggcagctcaagcttctcagaaaatggtggagactgaa
actatgaaccagtccatacagcacaaagaaccgaaaacacttaagaaaca
agaagtgtgaacaacctctccagcttctgtccaaggctgcatactctgaa
ggtcaggagaagataaggttgaagtgtcctacacttgctcattcgcacac
ttccctaatattacatcattatcctttaagtagatgattaccctctggga
cacaggtctggaaagccaagaatttaattttgctgattcccagggaccaa
tgacttttggttgtctcttctacatgaacttaactatactctaaaggttt
tgtctcctggcaccattattcaatgacattttcctaaagcctaatacaaa
tggcctctcttaagtcaatcatgtgaattgttaaaatattagtcagtgga
tctcacaaaaatccctgaaacgtcagaaaactgttcacatctgctctcaa
aaatattattgttgatgtttttcctgaatatatataagtacagtgtatgt
gactccatggaccagatgacaggattagatcctgtagaactggagttaga
gatggttgtgagatatgatgtgtgttccaggaactaaacatggattatct
gcatggtagcaaatctgctaattatctgcatggtagcaaatctgctaatt
actgcttcatctgaccagcctctccattaactttttaaatttaattttat
tttcttttacttattcaatttacattcagcacactcccctcttcaaggtc
acccctcccataatccttcccccattccccctcctgttcttttctgagca
tgtgggggcacccagaatttctcttcccctcctccttcaagtctctgaga
agcctaatgcttcctctccaagaccagagaatacagcccagctaggagaa
catatcccagatacaggcaacagcttttaggatatcccctaatccagttg
tccaggaaccacatgaaggtcaacagcacatcttgctacatctgactggg
ggaggcctaggtcagactgtattgttctttgtgggtggtttgactcaaaa
ggcccaaagggttcaggttagttgactctgttgattcttcggatggaagt
tcctatctcct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78337318_78338473
seq2: B6Ng01-249B13.g_67_1227 (reverse)

seq1  AGGAG-TAGGAAC-TCCATCAGAAG-ATCAACAGAGTCAACTAACCTGGA  47
      ||||| ||||||| |||||| |||| |||||||||||||||||||||| |
seq2  AGGAGATAGGAACTTCCATCCGAAGAATCAACAGAGTCAACTAACCTGAA  50

seq1  CCCTTTGGGCTTTCTGAGTC-AACCACCAACAAAGAAC-ATACAGTCTGG  95
      |||||||||| || |||||| ||||||| ||||||||| ||||||||| |
seq2  CCCTTTGGGCCTTTTGAGTCAAACCACCCACAAAGAACAATACAGTCT-G  99

seq1  ACCTAGGCCT-CCCCAGTCAGATGTAGC-AGATGTGCTGTTTGACCTTCA  143
      |||||||||| ||||||||||||||||| |||||||||| ||||||||||
seq2  ACCTAGGCCTCCCCCAGTCAGATGTAGCAAGATGTGCTG-TTGACCTTCA  148

seq1  TGTGGTTCCTGGACAACTGGATTAGGGGATATCCTAAAAGCTGTTGCCTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCCTGGACAACTGGATTAGGGGATATCCTAAAAGCTGTTGCCTG  198

seq1  TATCTGGGATATGTTCTCCTAGCTGGGCTGTATTCTCTGGTCTTGGAGAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGATATGTTCTCCTAGCTGGGCTGTATTCTCTGGTCTTGGAGAG  248

seq1  GAAGCATTAGGCTTCTCAGAGACTTGAAGGAGGAGGGGAAGAGAAATTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTAGGCTTCTCAGAGACTTGAAGGAGGAGGGGAAGAGAAATTCT  298

seq1  GGGTGCCCCCACATGCTCAGAAAAGAACAGGAGGGGGAATGGGGGAAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCCCACATGCTCAGAAAAGAACAGGAGGGGGAATGGGGGAAGGA  348

seq1  TTATGGGAGGGGTGACCTTGAAGAGGGGAGTGTGCTGAATGTAAATTGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAGGGGTGACCTTGAAGAGGGGAGTGTGCTGAATGTAAATTGAA  398

seq1  TAAGTAAAAGAAAATAAAATTAAATTTAAAAAGTTAATGGAGAGGCTGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAGAAAATAAAATTAAATTTAAAAAGTTAATGGAGAGGCTGGT  448

seq1  CAGATGAAGCAGTAATTAGCAGATTTGCTACCATGCAGATAATTAGCAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGCAGTAATTAGCAGATTTGCTACCATGCAGATAATTAGCAGA  498

seq1  TTTGCTACCATGCAGATAATCCATGTTTAGTTCCTGGAACACACATCATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACCATGCAGATAATCCATGTTTAGTTCCTGGAACACACATCATA  548

seq1  TCTCACAACCATCTCTAACTCCAGTTCTACAGGATCTAATCCTGTCATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAACCATCTCTAACTCCAGTTCTACAGGATCTAATCCTGTCATCT  598

seq1  GGTCCATGGAGTCACATACACTGTACTTATATATATTCAGGAAAAACATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGGAGTCACATACACTGTACTTATATATATTCAGGAAAAACATC  648

seq1  AACAATAATATTTTTGAGAGCAGATGTGAACAGTTTTCTGACGTTTCAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATATTTTTGAGAGCAGATGTGAACAGTTTTCTGACGTTTCAGG  698

seq1  GATTTTTGTGAGATCCACTGACTAATATTTTAACAATTCACATGATTGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTGAGATCCACTGACTAATATTTTAACAATTCACATGATTGAC  748

seq1  TTAAGAGAGGCCATTTGTATTAGGCTTTAGGAAAATGTCATTGAATAATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAGGCCATTTGTATTAGGCTTTAGGAAAATGTCATTGAATAATG  798

seq1  GTGCCAGGAGACAAAACCTTTAGAGTATAGTTAAGTTCATGTAGAAGAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGAGACAAAACCTTTAGAGTATAGTTAAGTTCATGTAGAAGAGA  848

seq1  CAACCAAAAGTCATTGGTCCCTGGGAATCAGCAAAATTAAATTCTTGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAAGTCATTGGTCCCTGGGAATCAGCAAAATTAAATTCTTGGCT  898

seq1  TTCCAGACCTGTGTCCCAGAGGGTAATCATCTACTTAAAGGATAATGATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACCTGTGTCCCAGAGGGTAATCATCTACTTAAAGGATAATGATG  948

seq1  TAATATTAGGGAAGTGTGCGAATGAGCAAGTGTAGGACACTTCAACCTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAGGGAAGTGTGCGAATGAGCAAGTGTAGGACACTTCAACCTTA  998

seq1  TCTTCTCCTGACCTTCAGAGTATGCAGCCTTGGACAGAAGCTGGAGAGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTGACCTTCAGAGTATGCAGCCTTGGACAGAAGCTGGAGAGGT  1048

seq1  TGTTCACACTTCTTGTTTCTTAAGTGTTTTCGGTTCTTTGTGCTGTATGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACTTCTTGTTTCTTAAGTGTTTTCGGTTCTTTGTGCTGTATGG  1098

seq1  ACTGGTTCATAGTTTCAGTCTCCACCATTTTCTGAGAAGCTTGAGCTGCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCATAGTTTCAGTCTCCACCATTTTCTGAGAAGCTTGAGCTGCC  1148

seq1  ATTCAGTGAATTC  1156
      |||||||||||||
seq2  ATTCAGTGAATTC  1161