BAC Information

Click to search

BAC

Clone NameB6Ng01-249L22
Chromosome10 (Build37)
Map Location 80,474,287 - 80,660,687
singlet/doubletdoublet
Overlap geneGng7, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3
Upstream geneAbca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, LOC100042403
Downstream geneItgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L22.bB6Ng01-249L22.g
ACCGA057483GA057484
length1,1041,130
definitionB6Ng01-249L22.b B6Ng01-249L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,659,593 - 80,660,687)(80,474,287 - 80,475,412)
sequence
gaattcactctggccttgaaatcagagatctgtctgcttcccttcagagt
gtggggttaaaggcgtgtgctatcaacgtctggctcttgaattccacttt
ctaacacttgagttttaccttcaaacttaagggtattttgttttgctttg
ggatggggctcctgtactcatttctatttctcttgtcatgctgccccaat
caatattagtgagacctgccttctgcgtgacagatgtggggtgtccccac
acccacaggtagcaatgcagacatctgtcatctccccagctgtagaagtc
ctgtgaccaacgtgaggagcttccctgtagggtcgcagcgtcaaggttaa
gcagaggctgaaagcacaggactggaacagggtttatgcttgccaaaccc
aggcctttgtcccaggcacaactgtggccagactcatctgctggtcacgt
cccccaaaatagttcagcatgagacagggacataagggagatgacttcaa
ggcagccagagcctggccactcaggcaccgtagacatgattcatagaata
aagaatgaacttggggctggaaggatggctcagtggctgctcttgcagag
gacgggaatcagtctccaacaccctcagggtggctcacatgcacttgtaa
ttccagctccagaggacatctttccggcccctgtgggtactgcacacatg
tggtacacagacaaaaatgcaggcaaaatatctatacacctaatgaaaaa
aaaaagtaaaaaataaactggggggcagcaagagggcccagtaggtaaag
gagcttgctgccaagtctgatgacatgagttccatcttcaaggcccttat
ggggagaagaaggaaaccattccctacaaggtatccactgacctctacac
atgtgctgtgggcatgttcacgttgccccccccacacacacacatgtaca
caccaatgtaatatgaacattttaaatgctggaaccagcattcagagtca
ctggccttgcccagtcttcccagaacatccatgtcctcaagggacctcaa
ccctcggctcaacaggcggatgcacctgtgtctggatatgggttaattgc
tgtt
gaattccagaacagccagggctacacagagaaaccctgtctcgagagaaa
aaaaaaagtcagaagcagtccaggtgtctacaaatggatggtgtaaatac
ggcatggtcagcccacacattggaataccacacaacagtgaacaagagcc
aggctctgaggaaccgaaggacacagagatcagtgagagaccagggcata
aggtcgcacaacctgagactccatgatgggaatgtccaaatcaggagaac
tgagagtctggaagtgcatctgtgggcgctgggcgggggcgggggcgggc
gggggccgggcggggcggagaacgtggcattagcctgtcatctatggatc
atggctgcacccggagatgagctcaggaaaaccctaaattattatgctta
aaatgttgaattttaaaatatgcaaatcagacccgaatttaaaacatgaa
aatcgatcagattatcccctttcccaagttctcaggaagaagttggcagc
cgtttgagaaggctctccgatgtcccatcgcggaccctgtcaccaacccc
caccagaggagactatgacaggactggtttcccaggagccagggagaaag
cggccagaccatggggatgaggggcggagatagggagcaggctgaggtgt
ctcctactcagtcacaaatggcggcttttgcctcccagtgtgggagtggg
acaggaggcaacagaaacaagtcctccctcctggccttggtgtcacaaga
acctggaattgccagggtcaggtcagccatgaaagggctcagcgtgggac
aatcttccacggaagaaaggcaagtaagcggtgacctaccaggccgctgt
catatagtcacaccagccagagaggaaacaaaagagtctggacttttcag
cctgtgtcaaccacagtggctgtggtagctgttctttctagaaagttcca
aggtctccaccaatccccacagttgacaggtctcactgtgcagcccaagc
ctggcctcaactcacagagattcacctgctcctggaaatttatgattata
ttccttgaagtctgggaacagcaccggggtctggtgcatgcttgggacaa
ggtcccaaaccatggagcactcattccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80659593_80660687
seq2: B6Ng01-249L22.b_47_1150 (reverse)

seq1  AACACGCAATAAACCC--ATCCCGACACAGGTGCACCCGCCTGGTGAGCC  48
      |||| ||||| |||||  |||| |||||||||||| ||||||| ||||||
seq2  AACA-GCAATTAACCCATATCCAGACACAGGTGCATCCGCCTGTTGAGCC  49

seq1  GAGGG-TGGGGTCCC-TGAGGACATGGGATGTTCTGGGGAGACTGGGCAA  96
      ||||| || |||||| ||||||||| |||||||||||| |||||||||||
seq2  GAGGGTTGAGGTCCCTTGAGGACAT-GGATGTTCTGGGAAGACTGGGCAA  98

seq1  -GCCAGTGACTCTG-ATGCTGGTCCCAGCATTTAAAATGTTCATATTACA  144
       ||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GGCCAGTGACTCTGAATGCTGGTTCCAGCATTTAAAATGTTCATATTACA  148

seq1  TTGGTGTGTACATGTGTGTGTGTGGGGGGGGC-ACGTGAACATG-CCACA  192
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TTGGTGTGTACATGTGTGTGTGTGGGGGGGGCAACGTGAACATGCCCACA  198

seq1  GCACATGTGTAGAGGTCAGTGGATACCTTGTA-GGAATGGTTTCCTTCTT  241
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCACATGTGTAGAGGTCAGTGGATACCTTGTAGGGAATGGTTTCCTTCTT  248

seq1  CT-CCCATAAGGGCCTTGAAGATGGAACTCATGTCATCAGACTTGGCAGC  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATAAGGGCCTTGAAGATGGAACTCATGTCATCAGACTTGGCAGC  298

seq1  AAGCTCCTTTACCTACTGGGCCCTCTTGCTG-CCCCCAGTTTATTTTTTA  339
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCTCCTTTACCTACTGGGCCCTCTTGCTGCCCCCCAGTTTATTTTTTA  348

seq1  CTTTTTTTTTTCATTAGGTGTATAGATATTTTGCCTGCATTTTTGTCTGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTCATTAGGTGTATAGATATTTTGCCTGCATTTTTGTCTGT  398

seq1  GTACCACATGTGTGCAGTACCCACAGGGGCCGGAAAGATGTCCTCTGGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACATGTGTGCAGTACCCACAGGGGCCGGAAAGATGTCCTCTGGAG  448

seq1  CTGGAATTACAAGTGCATGTGAGCCACCCTGAGGGTGTTGGAGACTGATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTACAAGTGCATGTGAGCCACCCTGAGGGTGTTGGAGACTGATT  498

seq1  CCCGTCCTCTGCAAGAGCAGCCACTGAGCCATCCTTCCAGCCCCAAGTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCTCTGCAAGAGCAGCCACTGAGCCATCCTTCCAGCCCCAAGTTC  548

seq1  ATTCTTTATTCTATGAATCATGTCTACGGTGCCTGAGTGGCCAGGCTCTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATTCTATGAATCATGTCTACGGTGCCTGAGTGGCCAGGCTCTG  598

seq1  GCTGCCTTGAAGTCATCTCCCTTATGTCCCTGTCTCATGCTGAACTATTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTGAAGTCATCTCCCTTATGTCCCTGTCTCATGCTGAACTATTT  648

seq1  TGGGGGACGTGACCAGCAGATGAGTCTGGCCACAGTTGTGCCTGGGACAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACGTGACCAGCAGATGAGTCTGGCCACAGTTGTGCCTGGGACAA  698

seq1  AGGCCTGGGTTTGGCAAGCATAAACCCTGTTCCAGTCCTGTGCTTTCAGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGGTTTGGCAAGCATAAACCCTGTTCCAGTCCTGTGCTTTCAGC  748

seq1  CTCTGCTTAACCTTGACGCTGCGACCCTACAGGGAAGCTCCTCACGTTGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTAACCTTGACGCTGCGACCCTACAGGGAAGCTCCTCACGTTGG  798

seq1  TCACAGGACTTCTACAGCTGGGGAGATGACAGATGTCTGCATTGCTACCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGACTTCTACAGCTGGGGAGATGACAGATGTCTGCATTGCTACCT  848

seq1  GTGGGTGTGGGGACACCCCACATCTGTCACGCAGAAGGCAGGTCTCACTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGGGGACACCCCACATCTGTCACGCAGAAGGCAGGTCTCACTA  898

seq1  ATATTGATTGGGGCAGCATGACAAGAGAAATAGAAATGAGTACAGGAGCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATTGGGGCAGCATGACAAGAGAAATAGAAATGAGTACAGGAGCC  948

seq1  CCATCCCAAAGCAAAACAAAATACCCTTAAGTTTGAAGGTAAAACTCAAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAAAGCAAAACAAAATACCCTTAAGTTTGAAGGTAAAACTCAAG  998

seq1  TGTTAGAAAGTGGAATTCAAGAGCCAGACGTTGATAGCACACGCCTTTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAAGTGGAATTCAAGAGCCAGACGTTGATAGCACACGCCTTTAA  1048

seq1  CCCCACACTCTGAAGGGAAGCAGACAGATCTCTGATTTCAAGGCCAGAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACTCTGAAGGGAAGCAGACAGATCTCTGATTTCAAGGCCAGAGT  1098

seq1  GAATTC  1095
      ||||||
seq2  GAATTC  1104

seq1: chr10_80474287_80475412
seq2: B6Ng01-249L22.g_65_1194

seq1  GAATTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAGAGAAA  50

seq1  AAAAAAAGTCAGAAGCAGTCCAGGTGTCTACAAATGGATGGTGTAAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCAGAAGCAGTCCAGGTGTCTACAAATGGATGGTGTAAATAC  100

seq1  GGCATGGTCAGCCCACACATTGGAATACCACACAACAGTGAACAAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTCAGCCCACACATTGGAATACCACACAACAGTGAACAAGAGCC  150

seq1  AGGCTCTGAGGAACCGAAGGACACAGAGATCAGTGAGAGACCAGGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGAGGAACCGAAGGACACAGAGATCAGTGAGAGACCAGGGCATA  200

seq1  AGGTCGCACAACCTGAGACTCCATGATGGGAATGTCCAAATCAGGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGCACAACCTGAGACTCCATGATGGGAATGTCCAAATCAGGAGAAC  250

seq1  TGAGAGTCTGGAAGTGCATCTGTGGGCGCTGGGCGGGGGCGGGGGCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTGGAAGTGCATCTGTGGGCGCTGGGCGGGGGCGGGGGCGGGC  300

seq1  GGGGGCCGGGCGGGGCGGAGAACGTGGCATTAGCCTGTCATCTATGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCGGGCGGGGCGGAGAACGTGGCATTAGCCTGTCATCTATGGATC  350

seq1  ATGGCTGCACCCGGAGATGAGCTCAGGAAAACCCTAAATTATTATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCACCCGGAGATGAGCTCAGGAAAACCCTAAATTATTATGCTTA  400

seq1  AAATGTTGAATTTTAAAATATGCAAATCAGACCCGAATTTAAAACATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAATTTTAAAATATGCAAATCAGACCCGAATTTAAAACATGAA  450

seq1  AATCGATCAGATTATCCCCTTTCCCAAGTTCTCAGGAAGAAGTTGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGATCAGATTATCCCCTTTCCCAAGTTCTCAGGAAGAAGTTGGCAGC  500

seq1  CGTTTGAGAAGGCTCTCCGATGTCCCATCGCGGACCCTGTCACCAACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAGAAGGCTCTCCGATGTCCCATCGCGGACCCTGTCACCAACCCC  550

seq1  CACCAGAGGAGACTATGACAGGACTGGTTTCCCAGGAGCCAGGGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGGAGACTATGACAGGACTGGTTTCCCAGGAGCCAGGGAGAAAG  600

seq1  CGGCCAGACCATGGGGATGAGGGGCGGAGATAGGGAGCAGGCTGAGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGACCATGGGGATGAGGGGCGGAGATAGGGAGCAGGCTGAGGTGT  650

seq1  CTCCTACTCAGTCACAAATGGCGGCTTTTGCCTCCCAGTGTGGGAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTCAGTCACAAATGGCGGCTTTTGCCTCCCAGTGTGGGAGTGGG  700

seq1  ACAGGAGGCAACAGAAACAAGTCCTCCCTCCTGGCCTTGGTGTCACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGCAACAGAAACAAGTCCTCCCTCCTGGCCTTGGTGTCACAAGA  750

seq1  ACCTGGAATTGCCAGGGTCAGGTCAGCCATGAAAGGGCTCAGGCGTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTGGAATTGCCAGGGTCAGGTCAGCCATGAAAGGGCTCA-GCGTGGGA  799

seq1  CAATCTTCCACGGAAGAAAGGCAAGTAAGCGGTGACCTACCAGGCCGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCACGGAAGAAAGGCAAGTAAGCGGTGACCTACCAGGCCGCTG  849

seq1  TCATATAGTCACACCAGCCAGAGAGGAAACAAAAGAGTCTGGAC-TTTCA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATATAGTCACACCAGCCAGAGAGGAAACAAAAGAGTCTGGACTTTTCA  899

seq1  GCCTGTGTCAACCACAGTGGCTGTGGTAGCTGTTCTTTCTAGAAAGTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTCAACCACAGTGGCTGTGGTAGCTGTTCTTTCTAGAAAGTTCC  949

seq1  AAGGTCTCCACCAATCCCCACAG-TGACAGGGTCTCACTGTGCAGCCCAA  998
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  AAGGTCTCCACCAATCCCCACAGTTGACA-GGTCTCACTGTGCAGCCCAA  998

seq1  G-CTGGCCTCAAACTCACAGAGATCCACCTGCTCCTG--AGATTATGA-T  1044
      | |||||||| ||||||||||||| ||||||||||||  |  |||||| |
seq2  GCCTGGCCTC-AACTCACAGAGATTCACCTGCTCCTGGAAATTTATGATT  1047

seq1  ATATT-CTTGAGGTCCTGGGGACAGCACCGGGGGCCTGGTGCATGC-TGG  1092
      ||||| ||||| || ||||| |||||||| |||| ||||||||||| |||
seq2  ATATTCCTTGAAGT-CTGGGAACAGCACC-GGGGTCTGGTGCATGCTTGG  1095

seq1  GACAGGTCCCCAACCCAGTGAGCA-TCATTCCAGT  1126
      |||| |  ||||| |||  ||||| ||||||||||
seq2  GACAAGGTCCCAAACCATGGAGCACTCATTCCAGT  1130